HEADER CELL ADHESION 31-JUL-15 5CYX TITLE CRYSTAL STRUCTURE OF MOUSE PROTOCADHERIN-24 EC1-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CDHR2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-348; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDHR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ADHESION, BRUSH BORDER, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Z.R.JOHNSON,M.SOTOMAYOR REVDAT 2 27-SEP-23 5CYX 1 REMARK LINK REVDAT 1 02-NOV-16 5CYX 0 JRNL AUTH Z.R.JOHNSON,M.SOTOMAYOR JRNL TITL CRYSTAL STRUCTURE OF MOUSE PROTOCADHERIN-24 EC1-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1738 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2509 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2351 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3427 ; 1.632 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5420 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 7.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;39.857 ;25.877 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;14.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2872 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 545 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 1.517 ; 2.821 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1273 ; 1.515 ; 2.819 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1590 ; 2.478 ; 4.214 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1591 ; 2.478 ; 4.216 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 1.490 ; 3.035 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1236 ; 1.490 ; 3.037 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1836 ; 2.450 ; 4.479 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2685 ; 6.517 ;22.516 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2657 ; 6.491 ;22.239 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 99 REMARK 3 RESIDUE RANGE : A 1001 A 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5540 93.0190 335.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.2365 REMARK 3 T33: 0.5841 T12: -0.0958 REMARK 3 T13: 0.0047 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.4395 L22: 0.4018 REMARK 3 L33: 0.7136 L12: -0.1789 REMARK 3 L13: 0.0876 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.0150 S13: -0.0799 REMARK 3 S21: 0.1246 S22: 0.0811 S23: -0.0031 REMARK 3 S31: -0.1652 S32: 0.2369 S33: -0.2075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 216 REMARK 3 RESIDUE RANGE : A 1003 A 1004 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4720 99.2320 290.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.2551 REMARK 3 T33: 0.6595 T12: -0.0755 REMARK 3 T13: 0.0372 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.6143 REMARK 3 L33: 4.6390 L12: -0.0614 REMARK 3 L13: 0.0595 L23: -0.1853 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0222 S13: -0.0028 REMARK 3 S21: 0.0631 S22: 0.0292 S23: 0.0309 REMARK 3 S31: -0.2682 S32: 0.0268 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 324 REMARK 3 RESIDUE RANGE : A 1005 A 1005 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0000 106.8790 241.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.8453 REMARK 3 T33: 0.4459 T12: 0.0872 REMARK 3 T13: 0.0252 T23: 0.1450 REMARK 3 L TENSOR REMARK 3 L11: 0.0216 L22: 0.9726 REMARK 3 L33: 6.4816 L12: 0.0469 REMARK 3 L13: 0.0341 L23: -0.6194 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0780 S13: 0.0507 REMARK 3 S21: 0.1125 S22: -0.0983 S23: -0.1111 REMARK 3 S31: -0.0232 S32: -1.1578 S33: 0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AQE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M LICL2 0.1 M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.76700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 129.50024 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -74.76700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 129.50024 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASP A 32 REMARK 465 SER A 33 REMARK 465 ASP A 34 REMARK 465 ASN A 35 REMARK 465 ASP A 36 REMARK 465 HIS A 37 REMARK 465 ASP A 325 REMARK 465 VAL A 326 REMARK 465 ASN A 327 REMARK 465 ASP A 328 REMARK 465 LEU A 329 REMARK 465 GLU A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 176 -73.55 -119.12 REMARK 500 SER A 177 142.64 -170.86 REMARK 500 ASP A 216 18.96 -141.04 REMARK 500 ARG A 265 64.74 72.31 REMARK 500 GLU A 291 50.01 -102.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 30 THR A 31 30.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 OE1 REMARK 620 2 ASP A 66 OD1 93.4 REMARK 620 3 GLU A 68 OE1 82.0 89.6 REMARK 620 4 ASP A 99 OD2 91.7 163.3 106.8 REMARK 620 5 HOH A1174 O 173.8 91.6 94.5 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 OE2 REMARK 620 2 GLU A 68 OE1 85.0 REMARK 620 3 GLU A 68 OE2 110.6 47.3 REMARK 620 4 ASP A 96 OD1 82.8 112.8 77.0 REMARK 620 5 ARG A 97 O 80.7 154.5 158.2 86.3 REMARK 620 6 ASP A 99 OD1 88.0 84.4 123.4 159.5 74.2 REMARK 620 7 ASP A 132 OD1 162.6 99.9 84.4 110.0 88.3 76.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 98 OD1 REMARK 620 2 ASN A 100 O 90.7 REMARK 620 3 ASP A 130 OD1 150.2 92.8 REMARK 620 4 ASP A 130 OD2 157.4 86.4 52.4 REMARK 620 5 ASP A 132 OD2 74.9 80.5 76.6 126.5 REMARK 620 6 ALA A 136 O 94.8 173.9 81.1 89.6 98.2 REMARK 620 7 ASP A 188 OD2 73.3 99.6 134.8 85.0 148.2 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE2 REMARK 620 2 ASP A 213 OD1 80.3 REMARK 620 3 GLU A 214 O 85.1 91.4 REMARK 620 4 ASP A 216 OD1 92.3 171.8 84.4 REMARK 620 5 ASP A 249 OD1 169.2 100.5 84.2 86.2 REMARK 620 6 HOH A1109 O 81.8 86.7 166.8 95.8 109.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 217 O REMARK 620 2 ASP A 247 OD1 102.4 REMARK 620 3 ASP A 249 OD2 77.7 85.4 REMARK 620 4 GLU A 303 OE1 123.9 99.6 155.2 REMARK 620 5 GLU A 303 OE2 86.7 73.2 150.1 52.2 REMARK 620 6 HOH A1114 O 159.3 82.3 82.7 74.1 113.8 REMARK 620 7 HOH A1172 O 82.2 175.3 94.9 78.2 108.2 93.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CO1 RELATED DB: PDB DBREF 5CYX A 1 328 UNP E9Q7P9 E9Q7P9_MOUSE 21 348 SEQADV 5CYX MET A 0 UNP E9Q7P9 INITIATING METHIONINE SEQADV 5CYX LEU A 329 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX GLU A 330 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 331 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 332 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 333 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 334 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 335 UNP E9Q7P9 EXPRESSION TAG SEQADV 5CYX HIS A 336 UNP E9Q7P9 EXPRESSION TAG SEQRES 1 A 337 MET ASN SER PRO PRO SER PHE GLY VAL ASN MET THR LEU SEQRES 2 A 337 VAL THR LEU PRO GLU ASP LEU PRO VAL GLY ALA VAL ALA SEQRES 3 A 337 PHE TRP LEU VAL ALA THR ASP SER ASP ASN ASP HIS LEU SEQRES 4 A 337 THR TYR GLY ILE SER GLY PRO ASN ALA SER TYR PHE SER SEQRES 5 A 337 VAL ASN ALA ASN THR GLY GLU VAL LYS LEU ALA SER PRO SEQRES 6 A 337 LEU ASP PHE GLU THR VAL PRO PHE PHE LYS ILE THR ILE SEQRES 7 A 337 SER THR SER ASP GLY LEU ASN ILE ARG THR ALA GLU MET SEQRES 8 A 337 GLN VAL ILE VAL GLU ASP ARG ASN ASP ASN ILE PRO VAL SEQRES 9 A 337 PHE LEU ASN THR GLU PHE SER THR SER ILE ASN GLU THR SEQRES 10 A 337 LEU PRO VAL GLY SER VAL VAL PHE SER VAL LEU ALA GLU SEQRES 11 A 337 ASP LYS ASP THR GLY THR ALA GLY LEU VAL GLN TYR PHE SEQRES 12 A 337 ILE GLU LYS VAL ILE PRO SER THR ALA ASN SER ASN ASN SEQRES 13 A 337 LEU PHE ARG ILE LEU GLU ASN GLY SER ILE VAL LEU ASN SEQRES 14 A 337 ASP THR LEU SER TYR ASN ASN LYS SER ALA PHE TYR GLN SEQRES 15 A 337 LEU GLU LEU LYS ALA CYS ASP SER GLY GLY ILE LEU ASP SEQRES 16 A 337 ASN LYS PRO LYS THR GLN CYS SER GLN PRO VAL PHE VAL SEQRES 17 A 337 SER ILE SER VAL ILE ASP GLU PRO ASP LEU ASP PRO ARG SEQRES 18 A 337 PHE ILE ARG GLU PHE TYR SER ALA SER VAL ALA GLU ASP SEQRES 19 A 337 ALA THR LEU GLY THR SER VAL LEU THR VAL GLU ALA VAL SEQRES 20 A 337 ASP SER ASP LYS GLY ILE ASN ASP ILE VAL THR TYR SER SEQRES 21 A 337 VAL SER ASN SER THR ARG PRO GLY TRP PHE ASP ILE ARG SEQRES 22 A 337 GLU ASP GLY VAL ILE PHE VAL ASN GLY SER LEU ASP ARG SEQRES 23 A 337 GLU GLN LEU LEU LEU GLU ASN GLU GLU VAL GLN ILE GLN SEQRES 24 A 337 VAL THR ALA THR GLU LYS ASN LEU ASN ILE TYR GLY GLN SEQRES 25 A 337 GLU ALA LYS ALA SER MET TRP VAL THR ILE ARG VAL THR SEQRES 26 A 337 ASP VAL ASN ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CL A1006 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CA 5(CA 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *98(H2 O) HELIX 1 AA1 ASN A 46 SER A 48 5 3 HELIX 2 AA2 THR A 133 GLY A 137 5 5 HELIX 3 AA3 ASN A 152 ASN A 155 5 4 HELIX 4 AA4 ASP A 284 LEU A 289 5 6 SHEET 1 AA1 4 LEU A 12 PRO A 16 0 SHEET 2 AA1 4 ILE A 85 GLU A 95 1 O GLN A 91 N VAL A 13 SHEET 3 AA1 4 PHE A 72 SER A 80 -1 N PHE A 73 O VAL A 92 SHEET 4 AA1 4 THR A 39 SER A 43 -1 N SER A 43 O THR A 76 SHEET 1 AA2 3 VAL A 24 TRP A 27 0 SHEET 2 AA2 3 GLU A 58 LEU A 61 -1 O VAL A 59 N PHE A 26 SHEET 3 AA2 3 PHE A 50 VAL A 52 -1 N SER A 51 O LYS A 60 SHEET 1 AA3 4 GLU A 108 ASN A 114 0 SHEET 2 AA3 4 VAL A 205 ILE A 212 1 O SER A 210 N THR A 111 SHEET 3 AA3 4 PHE A 179 ASP A 188 -1 N TYR A 180 O ILE A 209 SHEET 4 AA3 4 VAL A 139 ILE A 147 -1 N GLN A 140 O CYS A 187 SHEET 1 AA4 3 VAL A 122 SER A 125 0 SHEET 2 AA4 3 SER A 164 LEU A 167 -1 O ILE A 165 N PHE A 124 SHEET 3 AA4 3 PHE A 157 ILE A 159 -1 N ARG A 158 O VAL A 166 SHEET 1 AA5 2 GLY A 191 LEU A 193 0 SHEET 2 AA5 2 LYS A 196 LYS A 198 -1 O LYS A 196 N LEU A 193 SHEET 1 AA6 2 PRO A 219 PHE A 221 0 SHEET 2 AA6 2 ALA A 245 ASP A 247 -1 O VAL A 246 N ARG A 220 SHEET 1 AA7 4 SER A 227 VAL A 230 0 SHEET 2 AA7 4 LYS A 314 VAL A 323 1 O ARG A 322 N VAL A 230 SHEET 3 AA7 4 GLU A 294 GLU A 303 -1 N VAL A 299 O MET A 317 SHEET 4 AA7 4 VAL A 256 SER A 263 -1 N ASN A 262 O GLN A 298 SHEET 1 AA8 3 SER A 239 THR A 242 0 SHEET 2 AA8 3 VAL A 276 VAL A 279 -1 O ILE A 277 N LEU A 241 SHEET 3 AA8 3 PHE A 269 ILE A 271 -1 N ASP A 270 O PHE A 278 SSBOND 1 CYS A 187 CYS A 201 1555 1555 2.19 LINK OE1 GLU A 17 CA CA A1001 1555 1555 2.39 LINK OE2 GLU A 17 CA CA A1002 1555 1555 2.20 LINK OD1 ASP A 66 CA CA A1001 1555 1555 2.31 LINK OE1 GLU A 68 CA CA A1001 1555 1555 2.43 LINK OE1 GLU A 68 CA CA A1002 1555 1555 2.66 LINK OE2 GLU A 68 CA CA A1002 1555 1555 2.52 LINK OD1 ASP A 96 CA CA A1002 1555 1555 2.32 LINK O ARG A 97 CA CA A1002 1555 1555 2.44 LINK OD1 ASN A 98 CA CA A1003 1555 1555 2.32 LINK OD2 ASP A 99 CA CA A1001 1555 1555 2.18 LINK OD1 ASP A 99 CA CA A1002 1555 1555 2.36 LINK O ASN A 100 CA CA A1003 1555 1555 2.33 LINK OE2 GLU A 115 CA CA A1004 1555 1555 2.28 LINK OD1 ASP A 130 CA CA A1003 1555 1555 2.54 LINK OD2 ASP A 130 CA CA A1003 1555 1555 2.32 LINK OD1 ASP A 132 CA CA A1002 1555 1555 2.36 LINK OD2 ASP A 132 CA CA A1003 1555 1555 2.34 LINK O ALA A 136 CA CA A1003 1555 1555 2.33 LINK OD2 ASP A 188 CA CA A1003 1555 1555 2.50 LINK OD1 ASP A 213 CA CA A1004 1555 1555 2.33 LINK O GLU A 214 CA CA A1004 1555 1555 2.29 LINK OD1 ASP A 216 CA CA A1004 1555 1555 2.36 LINK O LEU A 217 CA CA A1005 1555 1555 2.31 LINK OD1 ASP A 247 CA CA A1005 1555 1555 2.42 LINK OD1 ASP A 249 CA CA A1004 1555 1555 2.34 LINK OD2 ASP A 249 CA CA A1005 1555 1555 2.19 LINK OE1 GLU A 303 CA CA A1005 1555 1555 2.40 LINK OE2 GLU A 303 CA CA A1005 1555 1555 2.46 LINK CA CA A1001 O HOH A1174 1555 1555 2.46 LINK CA CA A1004 O HOH A1109 1555 1555 2.38 LINK CA CA A1005 O HOH A1114 1555 1555 2.50 LINK CA CA A1005 O HOH A1172 1555 1555 2.55 CISPEP 1 ILE A 147 PRO A 148 0 -6.15 SITE 1 AC1 5 GLU A 17 ASP A 66 GLU A 68 ASP A 99 SITE 2 AC1 5 HOH A1174 SITE 1 AC2 6 GLU A 17 GLU A 68 ASP A 96 ARG A 97 SITE 2 AC2 6 ASP A 99 ASP A 132 SITE 1 AC3 6 ASN A 98 ASN A 100 ASP A 130 ASP A 132 SITE 2 AC3 6 ALA A 136 ASP A 188 SITE 1 AC4 6 GLU A 115 ASP A 213 GLU A 214 ASP A 216 SITE 2 AC4 6 ASP A 249 HOH A1109 SITE 1 AC5 6 LEU A 217 ASP A 247 ASP A 249 GLU A 303 SITE 2 AC5 6 HOH A1114 HOH A1172 SITE 1 AC6 1 ARG A 158 CRYST1 74.767 74.767 140.620 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013375 0.007722 0.000000 0.00000 SCALE2 0.000000 0.015444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007111 0.00000