HEADER TRANSFERASE 31-JUL-15 5CZC TITLE THE STRUCTURE OF VINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYL-COA-[ACYL-CARRIER-PROTEIN] TRANSACYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HALSTEDII; SOURCE 3 ORGANISM_TAXID: 1944; SOURCE 4 GENE: VINK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCOLD I KEYWDS TRANSFERASE, POLYKETIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.MIYANAGA,S.IWASAWA,Y.SHINOHARA,F.KUDO,T.EGUCHI REVDAT 5 20-MAR-24 5CZC 1 LINK REVDAT 4 19-FEB-20 5CZC 1 JRNL REMARK REVDAT 3 30-MAR-16 5CZC 1 JRNL REVDAT 2 24-FEB-16 5CZC 1 JRNL REVDAT 1 03-FEB-16 5CZC 0 JRNL AUTH A.MIYANAGA,S.IWASAWA,Y.SHINOHARA,F.KUDO,T.EGUCHI JRNL TITL STRUCTURE-BASED ANALYSIS OF THE MOLECULAR INTERACTIONS JRNL TITL 2 BETWEEN ACYLTRANSFERASE AND ACYL CARRIER PROTEIN IN JRNL TITL 3 VICENISTATIN BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 1802 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26831085 JRNL DOI 10.1073/PNAS.1520042113 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 49694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2668 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.073 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4787 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4500 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6496 ; 1.827 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10300 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;28.586 ;22.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;13.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5443 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1145 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CALCIUM ACETATE, 20% REMARK 280 POLYETHYLENE GLYCOL 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 HIS A 10 REMARK 465 ASP A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 319 REMARK 465 PRO A 320 REMARK 465 ARG A 321 REMARK 465 ALA A 322 REMARK 465 ARG A 323 REMARK 465 THR A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 ARG A 327 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 HIS B 10 REMARK 465 ASP B 11 REMARK 465 VAL B 12 REMARK 465 GLU B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 GLY B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 320 REMARK 465 ARG B 321 REMARK 465 ALA B 322 REMARK 465 ARG B 323 REMARK 465 THR B 324 REMARK 465 THR B 325 REMARK 465 SER B 326 REMARK 465 ARG B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 644 O HOH A 679 2.11 REMARK 500 O HOH B 571 O HOH B 687 2.14 REMARK 500 OE2 GLU A 92 OH TYR A 115 2.14 REMARK 500 OE2 GLU B 74 O HOH B 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 685 O HOH B 696 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 279 CB SER B 279 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 242 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG B 269 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 275 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 106 -109.75 52.42 REMARK 500 HIS A 143 60.09 37.37 REMARK 500 LEU A 208 -60.71 -104.42 REMARK 500 HIS A 216 92.02 52.45 REMARK 500 VAL A 231 -50.53 -124.55 REMARK 500 ASP A 249 9.44 -157.77 REMARK 500 SER B 106 -109.28 57.36 REMARK 500 LEU B 208 -62.98 -102.26 REMARK 500 HIS B 216 84.17 60.83 REMARK 500 PHE B 220 32.36 -91.03 REMARK 500 ASP B 249 4.64 -155.19 REMARK 500 SER B 295 14.37 -145.13 REMARK 500 LEU B 296 -72.60 -132.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 169 O REMARK 620 2 GLU A 171 OE2 85.6 REMARK 620 3 HOH A 583 O 74.9 154.6 REMARK 620 4 HOH A 617 O 94.7 79.8 85.7 REMARK 620 5 GLU B 157 OE2 107.7 26.7 149.6 63.9 REMARK 620 6 HOH B 699 O 162.9 105.5 90.5 75.1 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 190 OE1 REMARK 620 2 GLU B 190 OE2 49.0 REMARK 620 3 HOH B 534 O 107.5 82.3 REMARK 620 4 HOH B 672 O 76.0 120.7 142.7 REMARK 620 5 HOH B 678 O 141.4 157.8 75.6 79.8 REMARK 620 6 HOH B 691 O 84.6 85.5 149.5 66.7 112.7 REMARK 620 7 HOH B 692 O 84.0 118.6 76.8 66.5 58.7 133.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 DBREF 5CZC A 1 327 UNP Q76KY5 Q76KY5_STRHA 1 327 DBREF 5CZC B 1 327 UNP Q76KY5 Q76KY5_STRHA 1 327 SEQADV 5CZC HIS A 0 UNP Q76KY5 EXPRESSION TAG SEQADV 5CZC HIS B 0 UNP Q76KY5 EXPRESSION TAG SEQRES 1 A 328 HIS MET ASN ALA THR VAL GLU THR THR GLN HIS ASP VAL SEQRES 2 A 328 GLU GLY THR GLY ALA ALA GLY ALA THR ALA MET LEU PHE SEQRES 3 A 328 PRO GLY MET GLY PRO ALA ALA PHE SER ASP VAL GLY ARG SEQRES 4 A 328 PHE MET VAL THR ASN ARG TYR THR ARG GLU LEU LEU ALA SEQRES 5 A 328 GLU ALA ASP ASP THR LEU GLY TYR SER LEU VAL ASP ARG SEQRES 6 A 328 PHE ARG GLN ALA GLU GLY ASP TYR SER GLU TYR ALA GLN SEQRES 7 A 328 ILE ALA PHE LEU VAL ASN CYS VAL ALA LEU ALA ARG TRP SEQRES 8 A 328 ALA GLU GLN THR MET ASP LEU THR PRO ARG ILE CYS ALA SEQRES 9 A 328 GLY ALA SER PHE GLY GLU LYS SER VAL ALA ALA TYR SER SEQRES 10 A 328 GLY ALA LEU THR PHE ALA ASP ALA VAL ARG MET THR ALA SEQRES 11 A 328 GLY LEU ALA ARG CYS MET ASP GLU TYR PHE ARG THR GLU SEQRES 12 A 328 HIS LEU GLY VAL VAL THR HIS SER PHE VAL ARG ALA PRO SEQRES 13 A 328 ARG GLU ARG LEU ASP GLU ILE LEU ALA GLU LEU ASP GLU SEQRES 14 A 328 ARG GLY GLU TRP HIS GLU ILE SER CYS HIS ILE ASP HIS SEQRES 15 A 328 ASP PHE PHE MET LEU THR LEU HIS GLU ARG ASN SER VAL SEQRES 16 A 328 TRP LEU GLU GLY ARG LEU ARG SER VAL GLY ALA MET PRO SEQRES 17 A 328 LEU TYR ALA MET ARG PRO PRO MET HIS ALA ALA ALA PHE SEQRES 18 A 328 GLY GLY LEU ARG ASP LYS ALA GLU GLU GLU VAL ILE ALA SEQRES 19 A 328 PRO LEU THR PHE HIS ASP PRO THR LEU PRO VAL VAL ALA SEQRES 20 A 328 ASP GLN ASP GLY LYS VAL LEU THR THR GLY ASP GLU VAL SEQRES 21 A 328 ARG THR MET LEU LEU GLU SER PHE VAL ARG PRO LEU ARG SEQRES 22 A 328 TRP PRO ASP VAL ILE SER SER LEU GLN ASP GLN GLY VAL SEQRES 23 A 328 THR ARG VAL CYS VAL ALA GLY PRO ASP SER LEU PHE GLY SEQRES 24 A 328 ARG VAL GLY THR THR THR ARG ALA PHE GLU VAL ILE ALA SEQRES 25 A 328 ALA THR PRO ARG LEU ALA LEU GLN PRO ARG ALA ARG THR SEQRES 26 A 328 THR SER ARG SEQRES 1 B 328 HIS MET ASN ALA THR VAL GLU THR THR GLN HIS ASP VAL SEQRES 2 B 328 GLU GLY THR GLY ALA ALA GLY ALA THR ALA MET LEU PHE SEQRES 3 B 328 PRO GLY MET GLY PRO ALA ALA PHE SER ASP VAL GLY ARG SEQRES 4 B 328 PHE MET VAL THR ASN ARG TYR THR ARG GLU LEU LEU ALA SEQRES 5 B 328 GLU ALA ASP ASP THR LEU GLY TYR SER LEU VAL ASP ARG SEQRES 6 B 328 PHE ARG GLN ALA GLU GLY ASP TYR SER GLU TYR ALA GLN SEQRES 7 B 328 ILE ALA PHE LEU VAL ASN CYS VAL ALA LEU ALA ARG TRP SEQRES 8 B 328 ALA GLU GLN THR MET ASP LEU THR PRO ARG ILE CYS ALA SEQRES 9 B 328 GLY ALA SER PHE GLY GLU LYS SER VAL ALA ALA TYR SER SEQRES 10 B 328 GLY ALA LEU THR PHE ALA ASP ALA VAL ARG MET THR ALA SEQRES 11 B 328 GLY LEU ALA ARG CYS MET ASP GLU TYR PHE ARG THR GLU SEQRES 12 B 328 HIS LEU GLY VAL VAL THR HIS SER PHE VAL ARG ALA PRO SEQRES 13 B 328 ARG GLU ARG LEU ASP GLU ILE LEU ALA GLU LEU ASP GLU SEQRES 14 B 328 ARG GLY GLU TRP HIS GLU ILE SER CYS HIS ILE ASP HIS SEQRES 15 B 328 ASP PHE PHE MET LEU THR LEU HIS GLU ARG ASN SER VAL SEQRES 16 B 328 TRP LEU GLU GLY ARG LEU ARG SER VAL GLY ALA MET PRO SEQRES 17 B 328 LEU TYR ALA MET ARG PRO PRO MET HIS ALA ALA ALA PHE SEQRES 18 B 328 GLY GLY LEU ARG ASP LYS ALA GLU GLU GLU VAL ILE ALA SEQRES 19 B 328 PRO LEU THR PHE HIS ASP PRO THR LEU PRO VAL VAL ALA SEQRES 20 B 328 ASP GLN ASP GLY LYS VAL LEU THR THR GLY ASP GLU VAL SEQRES 21 B 328 ARG THR MET LEU LEU GLU SER PHE VAL ARG PRO LEU ARG SEQRES 22 B 328 TRP PRO ASP VAL ILE SER SER LEU GLN ASP GLN GLY VAL SEQRES 23 B 328 THR ARG VAL CYS VAL ALA GLY PRO ASP SER LEU PHE GLY SEQRES 24 B 328 ARG VAL GLY THR THR THR ARG ALA PHE GLU VAL ILE ALA SEQRES 25 B 328 ALA THR PRO ARG LEU ALA LEU GLN PRO ARG ALA ARG THR SEQRES 26 B 328 THR SER ARG HET GOL A 401 6 HET CA A 402 1 HET GOL B 401 6 HET CA B 402 1 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *414(H2 O) HELIX 1 AA1 ALA A 32 ASN A 43 1 12 HELIX 2 AA2 ASN A 43 GLY A 58 1 16 HELIX 3 AA3 SER A 60 ALA A 68 1 9 HELIX 4 AA4 SER A 73 ASP A 96 1 24 HELIX 5 AA5 PHE A 107 SER A 116 1 10 HELIX 6 AA6 THR A 120 GLU A 142 1 23 HELIX 7 AA7 PRO A 155 ARG A 169 1 15 HELIX 8 AA8 ASN A 192 VAL A 203 1 12 HELIX 9 AA9 ALA A 217 ALA A 219 5 3 HELIX 10 AB1 PHE A 220 VAL A 231 1 12 HELIX 11 AB2 THR A 255 SER A 266 1 12 HELIX 12 AB3 TRP A 273 GLN A 283 1 11 HELIX 13 AB4 VAL A 300 ARG A 305 1 6 HELIX 14 AB5 THR A 313 LEU A 318 1 6 HELIX 15 AB6 ALA B 32 ASN B 43 1 12 HELIX 16 AB7 ASN B 43 GLY B 58 1 16 HELIX 17 AB8 SER B 60 ALA B 68 1 9 HELIX 18 AB9 SER B 73 MET B 95 1 23 HELIX 19 AC1 PHE B 107 SER B 116 1 10 HELIX 20 AC2 THR B 120 GLU B 142 1 23 HELIX 21 AC3 PRO B 155 ARG B 169 1 15 HELIX 22 AC4 ASN B 192 VAL B 203 1 12 HELIX 23 AC5 ALA B 217 ALA B 219 5 3 HELIX 24 AC6 PHE B 220 VAL B 231 1 12 HELIX 25 AC7 THR B 255 PHE B 267 1 13 HELIX 26 AC8 TRP B 273 GLN B 283 1 11 HELIX 27 AC9 VAL B 300 PHE B 307 1 8 HELIX 28 AD1 THR B 313 GLN B 319 1 7 SHEET 1 AA1 6 VAL A 252 LEU A 253 0 SHEET 2 AA1 6 VAL A 244 VAL A 245 -1 N VAL A 244 O LEU A 253 SHEET 3 AA1 6 ILE A 101 GLY A 104 1 N CYS A 102 O VAL A 245 SHEET 4 AA1 6 ALA A 20 PHE A 25 1 N MET A 23 O ILE A 101 SHEET 5 AA1 6 VAL A 285 ALA A 291 1 O CYS A 289 N LEU A 24 SHEET 6 AA1 6 GLU A 308 ALA A 312 1 O ILE A 310 N VAL A 288 SHEET 1 AA2 5 MET A 206 MET A 211 0 SHEET 2 AA2 5 VAL A 146 VAL A 152 -1 N VAL A 152 O MET A 206 SHEET 3 AA2 5 PHE A 183 HIS A 189 -1 O LEU A 186 N HIS A 149 SHEET 4 AA2 5 HIS A 173 ASP A 180 -1 N GLU A 174 O THR A 187 SHEET 5 AA2 5 LEU A 271 ARG A 272 1 O LEU A 271 N HIS A 178 SHEET 1 AA3 6 VAL B 252 LEU B 253 0 SHEET 2 AA3 6 VAL B 244 VAL B 245 -1 N VAL B 244 O LEU B 253 SHEET 3 AA3 6 ILE B 101 GLY B 104 1 N CYS B 102 O VAL B 245 SHEET 4 AA3 6 ALA B 20 PHE B 25 1 N PHE B 25 O ALA B 103 SHEET 5 AA3 6 VAL B 285 ALA B 291 1 O CYS B 289 N LEU B 24 SHEET 6 AA3 6 GLU B 308 ALA B 312 1 O ILE B 310 N VAL B 290 SHEET 1 AA4 5 MET B 206 MET B 211 0 SHEET 2 AA4 5 VAL B 146 VAL B 152 -1 N THR B 148 O MET B 211 SHEET 3 AA4 5 PHE B 183 HIS B 189 -1 O LEU B 186 N HIS B 149 SHEET 4 AA4 5 HIS B 173 ASP B 180 -1 N GLU B 174 O THR B 187 SHEET 5 AA4 5 LEU B 271 ARG B 272 1 O LEU B 271 N HIS B 178 LINK O ARG A 169 CA CA A 402 1555 1555 2.44 LINK OE2 GLU A 171 CA CA A 402 1555 1555 2.24 LINK CA CA A 402 O HOH A 583 1555 2746 2.36 LINK CA CA A 402 O HOH A 617 1555 1555 2.27 LINK CA CA A 402 OE2 GLU B 157 2756 1555 2.28 LINK CA CA A 402 O HOH B 699 1555 2746 2.43 LINK OE1 GLU B 190 CA CA B 402 1555 1555 2.67 LINK OE2 GLU B 190 CA CA B 402 1555 1555 2.53 LINK CA CA B 402 O HOH B 534 1555 1455 2.63 LINK CA CA B 402 O HOH B 672 1555 1555 2.28 LINK CA CA B 402 O HOH B 678 1555 1455 2.29 LINK CA CA B 402 O HOH B 691 1555 1555 2.33 LINK CA CA B 402 O HOH B 692 1555 1455 2.38 CISPEP 1 ARG A 212 PRO A 213 0 -2.31 CISPEP 2 ARG B 212 PRO B 213 0 -3.10 SITE 1 AC1 5 GLN A 77 PHE A 107 LYS A 110 MET A 211 SITE 2 AC1 5 PRO A 213 SITE 1 AC2 3 ARG A 169 GLU A 171 HOH A 617 SITE 1 AC3 6 PHE B 107 LYS B 110 MET B 215 HOH B 515 SITE 2 AC3 6 HOH B 624 HOH B 627 SITE 1 AC4 6 GLU B 190 HOH B 534 HOH B 672 HOH B 678 SITE 2 AC4 6 HOH B 691 HOH B 692 CRYST1 45.520 74.810 84.810 90.00 91.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021968 0.000000 0.000476 0.00000 SCALE2 0.000000 0.013367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011794 0.00000