HEADER IMMUNE SYSTEM 01-AUG-15 5CZV TITLE CRYSTAL STRUCTURE OF NOTCH3 NRR IN COMPLEX WITH 20350 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NEGATIVE REGULATORY REGION (UNP RESIDUES 1378-1640); COMPND 5 SYNONYM: NOTCH 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB 20350 HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 SYNONYM: IGG20350 HEAVY CHAIN, NVP-LMW976 HEAVY CHAIN; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: FAB 20350 LIGHT CHAIN; COMPND 14 CHAIN: L; COMPND 15 SYNONYM: IGG20350 LIGHT CHAIN, NVP-LMW976 LIGHT CHAIN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NOTCH3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-FS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ANTIBODY, NOTCH3, ONCOLOGY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.HU,C.FRYER,R.CHOPRA,K.CLARK REVDAT 4 27-SEP-23 5CZV 1 HETSYN REVDAT 3 29-JUL-20 5CZV 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 07-DEC-16 5CZV 1 JRNL REVDAT 1 01-JUN-16 5CZV 0 JRNL AUTH P.BERNASCONI-ELIAS,T.HU,D.JENKINS,B.FIRESTONE,S.GANS, JRNL AUTH 2 E.KURTH,P.CAPODIECI,J.DEPLAZES-LAUBER,K.PETROPOULOS,P.THIEL, JRNL AUTH 3 D.PONSEL,S.HEE CHOI,P.LEMOTTE,A.LONDON,M.GOETCSHKES,E.NOLIN, JRNL AUTH 4 M.D.JONES,K.SLOCUM,M.J.KLUK,D.M.WEINSTOCK,A.CHRISTODOULOU, JRNL AUTH 5 O.WEINBERG,J.JAEHRLING,S.A.ETTENBERG,A.BUCKLER,S.C.BLACKLOW, JRNL AUTH 6 J.C.ASTER,C.J.FRYER JRNL TITL CHARACTERIZATION OF ACTIVATING MUTATIONS OF NOTCH3 IN T-CELL JRNL TITL 2 ACUTE LYMPHOBLASTIC LEUKEMIA AND ANTI-LEUKEMIC ACTIVITY OF JRNL TITL 3 NOTCH3 INHIBITORY ANTIBODIES. JRNL REF ONCOGENE V. 35 6077 2016 JRNL REFN ISSN 0950-9232 JRNL PMID 27157619 JRNL DOI 10.1038/ONC.2016.133 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 11612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 567 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2523 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2145 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2391 REMARK 3 BIN R VALUE (WORKING SET) : 0.2124 REMARK 3 BIN FREE R VALUE : 0.2511 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.23 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.28770 REMARK 3 B22 (A**2) : 4.87880 REMARK 3 B33 (A**2) : -13.16650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.41350 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.577 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.539 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5060 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6887 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1684 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 117 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 741 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5060 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 650 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5599 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.6380 -17.5861 -44.5322 REMARK 3 T TENSOR REMARK 3 T11: -0.0454 T22: -0.3364 REMARK 3 T33: 0.2297 T12: -0.0046 REMARK 3 T13: -0.1360 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 2.7833 L22: 1.6388 REMARK 3 L33: 1.4174 L12: 0.3910 REMARK 3 L13: 0.1479 L23: 0.3942 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.1829 S13: -0.3997 REMARK 3 S21: -0.0958 S22: 0.0516 S23: -0.1273 REMARK 3 S31: 0.1478 S32: 0.2156 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.8527 9.4536 -7.7014 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: -0.1799 REMARK 3 T33: -0.1120 T12: 0.0991 REMARK 3 T13: -0.1846 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 2.7024 L22: 4.2176 REMARK 3 L33: 2.8021 L12: 0.9070 REMARK 3 L13: -0.2360 L23: 1.5708 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: -0.7333 S13: 0.1252 REMARK 3 S21: 0.5225 S22: 0.0257 S23: -0.0982 REMARK 3 S31: 0.0737 S32: -0.1434 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.3920 16.0591 -19.6693 REMARK 3 T TENSOR REMARK 3 T11: -0.1310 T22: -0.1357 REMARK 3 T33: 0.3114 T12: 0.0375 REMARK 3 T13: -0.3045 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.5247 L22: 1.5078 REMARK 3 L33: 1.7216 L12: 0.4972 REMARK 3 L13: -0.5928 L23: 1.4605 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.5436 S13: 0.1000 REMARK 3 S21: 0.3555 S22: 0.3173 S23: -0.6029 REMARK 3 S31: -0.0287 S32: 0.4095 S33: -0.3617 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11614 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3ETO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAAC, PH 5.6, 17.5% (V/V) REMARK 280 PEG3000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.95850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.95850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1378 REMARK 465 PRO A 1379 REMARK 465 GLU A 1380 REMARK 465 VAL A 1381 REMARK 465 SER A 1382 REMARK 465 GLU A 1383 REMARK 465 GLU A 1384 REMARK 465 PRO A 1385 REMARK 465 ARG A 1386 REMARK 465 CYS A 1387 REMARK 465 PRO A 1388 REMARK 465 ARG A 1389 REMARK 465 ALA A 1390 REMARK 465 ARG A 1560 REMARK 465 PRO A 1561 REMARK 465 SER A 1562 REMARK 465 PRO A 1563 REMARK 465 GLY A 1564 REMARK 465 SER A 1565 REMARK 465 GLU A 1566 REMARK 465 PRO A 1567 REMARK 465 ARG A 1568 REMARK 465 ALA A 1569 REMARK 465 ARG A 1570 REMARK 465 ARG A 1571 REMARK 465 GLU A 1572 REMARK 465 LEU A 1573 REMARK 465 ALA A 1574 REMARK 465 PRO A 1575 REMARK 465 GLU A 1576 REMARK 465 VAL A 1577 REMARK 465 LEU A 1634 REMARK 465 GLU A 1635 REMARK 465 PRO A 1636 REMARK 465 PRO A 1637 REMARK 465 GLU A 1638 REMARK 465 PRO A 1639 REMARK 465 SER A 1640 REMARK 465 GLY A 1641 REMARK 465 SER A 1642 REMARK 465 HIS A 1643 REMARK 465 HIS A 1644 REMARK 465 HIS A 1645 REMARK 465 HIS A 1646 REMARK 465 HIS A 1647 REMARK 465 HIS A 1648 REMARK 465 SER H 130 REMARK 465 SER H 131 REMARK 465 LYS H 132 REMARK 465 SER H 133 REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 GLY H 136 REMARK 465 GLY H 137 REMARK 465 THR H 138 REMARK 465 ALA H 139 REMARK 465 LYS H 217 REMARK 465 SER H 218 REMARK 465 CYS H 219 REMARK 465 ASP H 220 REMARK 465 LYS H 221 REMARK 465 THR H 222 REMARK 465 HIS H 223 REMARK 465 ASP L 1 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 213 CD NE CZ NH1 NH2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 ASN L 30 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1392 57.96 -142.67 REMARK 500 GLN A1432 34.81 -99.99 REMARK 500 GLN A1593 35.20 -92.12 REMARK 500 SER A1594 -170.34 56.44 REMARK 500 HIS A1599 39.07 -91.84 REMARK 500 ASP A1621 73.95 -108.79 REMARK 500 PRO A1623 49.88 -76.66 REMARK 500 PHE H 29 12.20 -51.14 REMARK 500 PRO H 41 -92.06 -19.44 REMARK 500 PRO H 150 -150.97 -91.50 REMARK 500 VAL H 155 102.20 -161.15 REMARK 500 SER H 159 15.83 59.73 REMARK 500 SER H 164 107.00 -59.24 REMARK 500 ASN L 30 -117.20 52.64 REMARK 500 ALA L 51 -45.37 70.70 REMARK 500 SER L 76 -80.49 -66.08 REMARK 500 ALA L 84 -173.50 -170.80 REMARK 500 LYS L 190 -60.17 -101.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A1395 O REMARK 620 2 ASP A1398 OD1 71.0 REMARK 620 3 ARG A1400 O 147.0 76.0 REMARK 620 4 ASP A1402 OD2 100.2 87.4 75.4 REMARK 620 5 ASP A1413 OD1 69.2 139.4 142.5 91.7 REMARK 620 6 ASP A1413 OD2 121.8 166.8 90.9 87.5 52.9 REMARK 620 7 ASP A1416 OD2 77.3 82.5 101.3 169.8 96.5 102.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A1436 O REMARK 620 2 ASN A1439 OD1 74.7 REMARK 620 3 ARG A1441 O 149.3 74.7 REMARK 620 4 ASP A1443 OD2 84.9 82.3 90.6 REMARK 620 5 ASP A1454 OD1 78.6 152.3 131.8 102.5 REMARK 620 6 ASP A1454 OD2 132.0 153.0 78.5 94.6 54.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1478 O REMARK 620 2 ASP A1481 OD1 76.5 REMARK 620 3 ARG A1483 O 153.4 78.0 REMARK 620 4 ASP A1485 OD2 94.8 98.2 81.5 REMARK 620 5 ASP A1496 OD1 75.2 149.7 131.2 94.7 REMARK 620 6 ASP A1496 OD2 127.0 153.4 79.5 92.5 51.9 REMARK 620 7 ASP A1499 OD2 93.4 76.4 87.8 168.9 94.7 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CZX RELATED DB: PDB REMARK 900 SAME ANTIGEN (NOTCH3 NRR) COMPLEXED WITH 20358 FAB DBREF 5CZV A 1378 1640 UNP Q9UM47 NOTC3_HUMAN 1378 1640 DBREF 5CZV H 1 223 PDB 5CZV 5CZV 1 223 DBREF 5CZV L 1 214 PDB 5CZV 5CZV 1 214 SEQADV 5CZV GLY A 1641 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV SER A 1642 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1643 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1644 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1645 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1646 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1647 UNP Q9UM47 EXPRESSION TAG SEQADV 5CZV HIS A 1648 UNP Q9UM47 EXPRESSION TAG SEQRES 1 A 271 ALA PRO GLU VAL SER GLU GLU PRO ARG CYS PRO ARG ALA SEQRES 2 A 271 ALA CYS GLN ALA LYS ARG GLY ASP GLN ARG CYS ASP ARG SEQRES 3 A 271 GLU CYS ASN SER PRO GLY CYS GLY TRP ASP GLY GLY ASP SEQRES 4 A 271 CYS SER LEU SER VAL GLY ASP PRO TRP ARG GLN CYS GLU SEQRES 5 A 271 ALA LEU GLN CYS TRP ARG LEU PHE ASN ASN SER ARG CYS SEQRES 6 A 271 ASP PRO ALA CYS SER SER PRO ALA CYS LEU TYR ASP ASN SEQRES 7 A 271 PHE ASP CYS HIS ALA GLY GLY ARG GLU ARG THR CYS ASN SEQRES 8 A 271 PRO VAL TYR GLU LYS TYR CYS ALA ASP HIS PHE ALA ASP SEQRES 9 A 271 GLY ARG CYS ASP GLN GLY CYS ASN THR GLU GLU CYS GLY SEQRES 10 A 271 TRP ASP GLY LEU ASP CYS ALA SER GLU VAL PRO ALA LEU SEQRES 11 A 271 LEU ALA ARG GLY VAL LEU VAL LEU THR VAL LEU LEU PRO SEQRES 12 A 271 PRO GLU GLU LEU LEU ARG SER SER ALA ASP PHE LEU GLN SEQRES 13 A 271 ARG LEU SER ALA ILE LEU ARG THR SER LEU ARG PHE ARG SEQRES 14 A 271 LEU ASP ALA HIS GLY GLN ALA MET VAL PHE PRO TYR HIS SEQRES 15 A 271 ARG PRO SER PRO GLY SER GLU PRO ARG ALA ARG ARG GLU SEQRES 16 A 271 LEU ALA PRO GLU VAL ILE GLY SER VAL VAL MET LEU GLU SEQRES 17 A 271 ILE ASP ASN ARG LEU CYS LEU GLN SER PRO GLU ASN ASP SEQRES 18 A 271 HIS CYS PHE PRO ASP ALA GLN SER ALA ALA ASP TYR LEU SEQRES 19 A 271 GLY ALA LEU SER ALA VAL GLU ARG LEU ASP PHE PRO TYR SEQRES 20 A 271 PRO LEU ARG ASP VAL ARG GLY GLU PRO LEU GLU PRO PRO SEQRES 21 A 271 GLU PRO SER GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 H 223 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 223 GLY THR PHE SER SER TYR THR ILE SER TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE LYS SEQRES 5 H 223 PRO ARG TRP GLY ALA ALA HIS TYR ALA GLN LYS PHE GLN SEQRES 6 H 223 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 223 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ARG GLY SER PHE TRP PHE GLY SEQRES 9 H 223 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 223 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 223 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 223 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 223 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 223 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 223 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 223 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 223 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 H 223 THR HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE ASN ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 LYS LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 LEU GLN TYR PRO MET THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET CA A5001 1 HET CA A5002 1 HET CA A5003 1 HET NAG A5004 14 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 CA 3(CA 2+) FORMUL 7 NAG C8 H15 N O6 FORMUL 8 HOH *7(H2 O) HELIX 1 AA1 CYS A 1392 ARG A 1396 5 5 HELIX 2 AA2 CYS A 1410 GLY A 1415 1 6 HELIX 3 AA3 CYS A 1433 PHE A 1437 5 5 HELIX 4 AA4 ASP A 1443 SER A 1447 5 5 HELIX 5 AA5 SER A 1448 ASP A 1457 5 10 HELIX 6 AA6 GLY A 1462 THR A 1466 5 5 HELIX 7 AA7 ASN A 1468 PHE A 1479 1 12 HELIX 8 AA8 ASP A 1485 ASN A 1489 5 5 HELIX 9 AA9 THR A 1490 ASP A 1499 5 10 HELIX 10 AB1 PRO A 1520 SER A 1527 1 8 HELIX 11 AB2 SER A 1527 ARG A 1540 1 14 HELIX 12 AB3 ASP A 1603 VAL A 1617 1 15 HELIX 13 AB4 THR H 28 TYR H 32 5 5 HELIX 14 AB5 GLN H 62 GLN H 65 5 4 HELIX 15 AB6 ARG H 87 THR H 91 5 5 HELIX 16 AB7 SER H 159 ALA H 161 5 3 HELIX 17 AB8 SER H 190 THR H 194 5 5 HELIX 18 AB9 GLN L 79 PHE L 83 5 5 HELIX 19 AC1 SER L 121 SER L 127 1 7 HELIX 20 AC2 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 3 SER A1542 PHE A1545 0 SHEET 2 AA1 3 GLY A1579 ASP A1587 -1 O ASP A1587 N SER A1542 SHEET 3 AA1 3 VAL A1555 TYR A1558 -1 N PHE A1556 O VAL A1581 SHEET 1 AA2 4 SER A1542 PHE A1545 0 SHEET 2 AA2 4 GLY A1579 ASP A1587 -1 O ASP A1587 N SER A1542 SHEET 3 AA2 4 VAL A1512 VAL A1517 -1 N LEU A1513 O LEU A1584 SHEET 4 AA2 4 LEU A1626 GLU A1632 -1 O ARG A1630 N VAL A1514 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA3 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA3 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA4 6 GLU H 10 LYS H 12 0 SHEET 2 AA4 6 THR H 110 VAL H 114 1 O THR H 113 N LYS H 12 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 112 SHEET 4 AA4 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA4 6 ALA H 58 TYR H 60 -1 O HIS H 59 N TRP H 50 SHEET 1 AA5 4 GLU H 10 LYS H 12 0 SHEET 2 AA5 4 THR H 110 VAL H 114 1 O THR H 113 N LYS H 12 SHEET 3 AA5 4 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 112 SHEET 4 AA5 4 TYR H 105 TRP H 106 -1 O TYR H 105 N ARG H 98 SHEET 1 AA6 4 SER H 123 LEU H 127 0 SHEET 2 AA6 4 LEU H 141 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 AA6 4 TYR H 179 VAL H 185 -1 O LEU H 181 N VAL H 145 SHEET 4 AA6 4 HIS H 167 LEU H 173 -1 N HIS H 167 O VAL H 184 SHEET 1 AA7 3 SER H 156 TRP H 157 0 SHEET 2 AA7 3 ILE H 198 ASN H 200 -1 O ASN H 200 N SER H 156 SHEET 3 AA7 3 ASP H 211 ARG H 213 -1 O LYS H 212 N CYS H 199 SHEET 1 AA8 4 MET L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA8 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA9 6 SER L 10 ALA L 13 0 SHEET 2 AA9 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA9 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA9 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AB1 4 SER L 10 ALA L 13 0 SHEET 2 AB1 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 1392 CYS A 1405 1555 1555 2.03 SSBOND 2 CYS A 1401 CYS A 1417 1555 1555 2.04 SSBOND 3 CYS A 1428 CYS A 1451 1555 1555 2.04 SSBOND 4 CYS A 1433 CYS A 1446 1555 1555 2.05 SSBOND 5 CYS A 1442 CYS A 1458 1555 1555 2.05 SSBOND 6 CYS A 1467 CYS A 1493 1555 1555 2.07 SSBOND 7 CYS A 1475 CYS A 1488 1555 1555 2.05 SSBOND 8 CYS A 1484 CYS A 1500 1555 1555 2.03 SSBOND 9 CYS A 1591 CYS A 1600 1555 1555 2.03 SSBOND 10 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 11 CYS H 143 CYS H 199 1555 1555 2.03 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 13 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN A1438 C1 NAG A5004 1555 1555 1.44 LINK O LYS A1395 CA CA A5001 1555 1555 2.58 LINK OD1 ASP A1398 CA CA A5001 1555 1555 2.33 LINK O ARG A1400 CA CA A5001 1555 1555 2.21 LINK OD2 ASP A1402 CA CA A5001 1555 1555 2.68 LINK OD1 ASP A1413 CA CA A5001 1555 1555 2.67 LINK OD2 ASP A1413 CA CA A5001 1555 1555 2.13 LINK OD2 ASP A1416 CA CA A5001 1555 1555 2.43 LINK O LEU A1436 CA CA A5002 1555 1555 2.31 LINK OD1 ASN A1439 CA CA A5002 1555 1555 2.44 LINK O ARG A1441 CA CA A5002 1555 1555 2.41 LINK OD2 ASP A1443 CA CA A5002 1555 1555 2.53 LINK OD1 ASP A1454 CA CA A5002 1555 1555 2.40 LINK OD2 ASP A1454 CA CA A5002 1555 1555 2.40 LINK O HIS A1478 CA CA A5003 1555 1555 2.34 LINK OD1 ASP A1481 CA CA A5003 1555 1555 2.49 LINK O ARG A1483 CA CA A5003 1555 1555 2.29 LINK OD2 ASP A1485 CA CA A5003 1555 1555 2.25 LINK OD1 ASP A1496 CA CA A5003 1555 1555 2.43 LINK OD2 ASP A1496 CA CA A5003 1555 1555 2.54 LINK OD2 ASP A1499 CA CA A5003 1555 1555 2.26 CISPEP 1 SER A 1594 PRO A 1595 0 -0.12 CISPEP 2 PHE H 149 PRO H 150 0 -3.87 CISPEP 3 GLU H 151 PRO H 152 0 9.84 CISPEP 4 SER L 7 PRO L 8 0 -4.91 CISPEP 5 TYR L 94 PRO L 95 0 -3.08 CISPEP 6 TYR L 140 PRO L 141 0 3.52 CRYST1 91.917 104.349 92.849 90.00 113.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010879 0.000000 0.004656 0.00000 SCALE2 0.000000 0.009583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011715 0.00000