HEADER TRANSFERASE 02-AUG-15 5D01 TITLE CRYSTAL STRUCTURE OF BSHA FROM B. SUBTILIS COMPLEXED WITH N- TITLE 2 ACETYLGLUCOSAMINYL-MALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYL-ALPHA-D-GLUCOSAMINYL L-MALATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLCNAC-MAL SYNTHASE,L-MALIC ACID GLYCOSYLTRANSFERASE BSHA; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSHA, JOJH, YPJH, BSU22460; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BACILLITHIOL, GLYCOSYLTRANSFERASE, GLCNAC, GRAM-POSITIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.D.COOK,K.R.WINCHELL REVDAT 6 27-SEP-23 5D01 1 HETSYN REVDAT 5 29-JUL-20 5D01 1 COMPND REMARK HETNAM SITE REVDAT 4 25-DEC-19 5D01 1 REMARK REVDAT 3 01-MAY-19 5D01 1 JRNL REVDAT 2 27-SEP-17 5D01 1 REMARK REVDAT 1 07-SEP-16 5D01 0 JRNL AUTH K.R.WINCHELL,P.W.EGELER,A.J.VANDUINEN,L.B.JACKSON, JRNL AUTH 2 M.E.KARPEN,P.D.COOK JRNL TITL A STRUCTURAL, FUNCTIONAL, AND COMPUTATIONAL ANALYSIS OF JRNL TITL 2 BSHA, THE FIRST ENZYME IN THE BACILLITHIOL BIOSYNTHESIS JRNL TITL 3 PATHWAY. JRNL REF BIOCHEMISTRY V. 55 4654 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27454321 JRNL DOI 10.1021/ACS.BIOCHEM.6B00472 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3210 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5686 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5585 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7697 ; 1.737 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12875 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 716 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;39.916 ;24.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1016 ;15.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 920 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6310 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1182 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2876 ; 4.014 ; 4.263 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2875 ; 4.012 ; 4.263 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3588 ; 5.405 ; 6.364 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5D01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 97.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM CITRATE, 10% (W/V) PEG REMARK 280 3400, 10 MM HEPES, 25 MM NACL, 5 MM UDP-N-ACETYLGLUCOSAMINE, 5 REMARK 280 MM MALATE., PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.62300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.62300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.53000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.53000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.62300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.53000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.62300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.53000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 42 REMARK 465 PRO A 43 REMARK 465 PHE A 44 REMARK 465 ARG A 45 REMARK 465 LEU A 46 REMARK 465 ASN A 47 REMARK 465 THR A 48 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 ARG A 179 REMARK 465 VAL A 180 REMARK 465 TYR A 181 REMARK 465 LEU A 182 REMARK 465 LYS A 183 REMARK 465 ASP A 264 REMARK 465 ARG A 265 REMARK 465 GLU A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ILE B 42 REMARK 465 PRO B 43 REMARK 465 PHE B 44 REMARK 465 ARG B 45 REMARK 465 LEU B 46 REMARK 465 ASN B 47 REMARK 465 THR B 48 REMARK 465 GLU B 178 REMARK 465 ARG B 179 REMARK 465 VAL B 180 REMARK 465 TYR B 181 REMARK 465 LEU B 182 REMARK 465 LYS B 183 REMARK 465 GLU B 375 REMARK 465 PRO B 376 REMARK 465 GLU B 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 TYR A 49 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 GLN A 263 CG CD OE1 NE2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 14 CG1 CG2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 264 CG OD1 OD2 REMARK 470 ARG B 265 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 360 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 570 O HOH A 580 2.15 REMARK 500 OD1 ASP A 131 OG SER A 133 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 12 C - N - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 76.21 -150.30 REMARK 500 ALA A 64 10.07 56.64 REMARK 500 TYR A 95 136.38 93.34 REMARK 500 GLU A 283 104.64 -162.50 REMARK 500 PHE A 285 -64.48 -137.31 REMARK 500 ASN A 303 47.50 -87.68 REMARK 500 VAL A 315 -50.18 -135.34 REMARK 500 ASP A 324 76.54 -67.48 REMARK 500 ASN A 355 -81.58 -97.92 REMARK 500 SER B 13 104.98 -162.66 REMARK 500 VAL B 14 72.78 -117.39 REMARK 500 THR B 39 -157.73 -149.75 REMARK 500 ASN B 61 68.54 -117.88 REMARK 500 ALA B 64 169.24 172.60 REMARK 500 VAL B 65 -60.86 71.54 REMARK 500 TYR B 95 137.43 82.56 REMARK 500 ASN B 113 57.49 -99.28 REMARK 500 GLU B 283 102.95 -169.62 REMARK 500 PHE B 285 -62.63 -136.59 REMARK 500 ASN B 314 27.59 46.89 REMARK 500 VAL B 315 -54.51 -123.85 REMARK 500 ASN B 355 -91.06 -111.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 13 VAL A 14 147.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 584 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 6.32 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D00 RELATED DB: PDB DBREF 5D01 A 1 377 UNP P42982 BSHA_BACSU 1 377 DBREF 5D01 B 1 377 UNP P42982 BSHA_BACSU 1 377 SEQADV 5D01 GLY A -1 UNP P42982 EXPRESSION TAG SEQADV 5D01 HIS A 0 UNP P42982 EXPRESSION TAG SEQADV 5D01 GLY B -1 UNP P42982 EXPRESSION TAG SEQADV 5D01 HIS B 0 UNP P42982 EXPRESSION TAG SEQRES 1 A 379 GLY HIS MET ARG LYS LEU LYS ILE GLY ILE THR CYS TYR SEQRES 2 A 379 PRO SER VAL GLY GLY SER GLY ILE ILE ALA THR GLU LEU SEQRES 3 A 379 GLY LYS GLN LEU ALA GLU LYS GLY HIS GLU ILE HIS PHE SEQRES 4 A 379 ILE THR SER SER ILE PRO PHE ARG LEU ASN THR TYR HIS SEQRES 5 A 379 PRO ASN ILE HIS PHE HIS GLU VAL GLU VAL ASN GLN TYR SEQRES 6 A 379 ALA VAL PHE LYS TYR PRO PRO TYR ASP LEU THR LEU ALA SEQRES 7 A 379 SER LYS ILE ALA GLU VAL ALA GLU ARG GLU ASN LEU ASP SEQRES 8 A 379 ILE ILE HIS ALA HIS TYR ALA LEU PRO HIS ALA VAL CYS SEQRES 9 A 379 ALA TYR LEU ALA LYS GLN MET LEU LYS ARG ASN ILE GLY SEQRES 10 A 379 ILE VAL THR THR LEU HIS GLY THR ASP ILE THR VAL LEU SEQRES 11 A 379 GLY TYR ASP PRO SER LEU LYS ASP LEU ILE ARG PHE ALA SEQRES 12 A 379 ILE GLU SER SER ASP ARG VAL THR ALA VAL SER SER ALA SEQRES 13 A 379 LEU ALA ALA GLU THR TYR ASP LEU ILE LYS PRO GLU LYS SEQRES 14 A 379 LYS ILE GLU THR ILE TYR ASN PHE ILE ASP GLU ARG VAL SEQRES 15 A 379 TYR LEU LYS LYS ASN THR ALA ALA ILE LYS GLU LYS HIS SEQRES 16 A 379 GLY ILE LEU PRO ASP GLU LYS VAL VAL ILE HIS VAL SER SEQRES 17 A 379 ASN PHE ARG LYS VAL LYS ARG VAL GLN ASP VAL ILE ARG SEQRES 18 A 379 VAL PHE ARG ASN ILE ALA GLY LYS THR LYS ALA LYS LEU SEQRES 19 A 379 LEU LEU VAL GLY ASP GLY PRO GLU LYS SER THR ALA CYS SEQRES 20 A 379 GLU LEU ILE ARG LYS TYR GLY LEU GLU ASP GLN VAL LEU SEQRES 21 A 379 MET LEU GLY ASN GLN ASP ARG VAL GLU ASP LEU TYR SER SEQRES 22 A 379 ILE SER ASP LEU LYS LEU LEU LEU SER GLU LYS GLU SER SEQRES 23 A 379 PHE GLY LEU VAL LEU LEU GLU ALA MET ALA CYS GLY VAL SEQRES 24 A 379 PRO CYS ILE GLY THR ASN ILE GLY GLY ILE PRO GLU VAL SEQRES 25 A 379 ILE LYS ASN ASN VAL SER GLY PHE LEU VAL ASP VAL GLY SEQRES 26 A 379 ASP VAL THR ALA ALA THR ALA ARG ALA MET SER ILE LEU SEQRES 27 A 379 GLU ASP GLU GLN LEU SER ASN ARG PHE THR LYS ALA ALA SEQRES 28 A 379 ILE GLU MET LEU GLU ASN GLU PHE SER SER LYS LYS ILE SEQRES 29 A 379 VAL SER GLN TYR GLU GLN ILE TYR ALA ASP LEU ALA GLU SEQRES 30 A 379 PRO GLU SEQRES 1 B 379 GLY HIS MET ARG LYS LEU LYS ILE GLY ILE THR CYS TYR SEQRES 2 B 379 PRO SER VAL GLY GLY SER GLY ILE ILE ALA THR GLU LEU SEQRES 3 B 379 GLY LYS GLN LEU ALA GLU LYS GLY HIS GLU ILE HIS PHE SEQRES 4 B 379 ILE THR SER SER ILE PRO PHE ARG LEU ASN THR TYR HIS SEQRES 5 B 379 PRO ASN ILE HIS PHE HIS GLU VAL GLU VAL ASN GLN TYR SEQRES 6 B 379 ALA VAL PHE LYS TYR PRO PRO TYR ASP LEU THR LEU ALA SEQRES 7 B 379 SER LYS ILE ALA GLU VAL ALA GLU ARG GLU ASN LEU ASP SEQRES 8 B 379 ILE ILE HIS ALA HIS TYR ALA LEU PRO HIS ALA VAL CYS SEQRES 9 B 379 ALA TYR LEU ALA LYS GLN MET LEU LYS ARG ASN ILE GLY SEQRES 10 B 379 ILE VAL THR THR LEU HIS GLY THR ASP ILE THR VAL LEU SEQRES 11 B 379 GLY TYR ASP PRO SER LEU LYS ASP LEU ILE ARG PHE ALA SEQRES 12 B 379 ILE GLU SER SER ASP ARG VAL THR ALA VAL SER SER ALA SEQRES 13 B 379 LEU ALA ALA GLU THR TYR ASP LEU ILE LYS PRO GLU LYS SEQRES 14 B 379 LYS ILE GLU THR ILE TYR ASN PHE ILE ASP GLU ARG VAL SEQRES 15 B 379 TYR LEU LYS LYS ASN THR ALA ALA ILE LYS GLU LYS HIS SEQRES 16 B 379 GLY ILE LEU PRO ASP GLU LYS VAL VAL ILE HIS VAL SER SEQRES 17 B 379 ASN PHE ARG LYS VAL LYS ARG VAL GLN ASP VAL ILE ARG SEQRES 18 B 379 VAL PHE ARG ASN ILE ALA GLY LYS THR LYS ALA LYS LEU SEQRES 19 B 379 LEU LEU VAL GLY ASP GLY PRO GLU LYS SER THR ALA CYS SEQRES 20 B 379 GLU LEU ILE ARG LYS TYR GLY LEU GLU ASP GLN VAL LEU SEQRES 21 B 379 MET LEU GLY ASN GLN ASP ARG VAL GLU ASP LEU TYR SER SEQRES 22 B 379 ILE SER ASP LEU LYS LEU LEU LEU SER GLU LYS GLU SER SEQRES 23 B 379 PHE GLY LEU VAL LEU LEU GLU ALA MET ALA CYS GLY VAL SEQRES 24 B 379 PRO CYS ILE GLY THR ASN ILE GLY GLY ILE PRO GLU VAL SEQRES 25 B 379 ILE LYS ASN ASN VAL SER GLY PHE LEU VAL ASP VAL GLY SEQRES 26 B 379 ASP VAL THR ALA ALA THR ALA ARG ALA MET SER ILE LEU SEQRES 27 B 379 GLU ASP GLU GLN LEU SER ASN ARG PHE THR LYS ALA ALA SEQRES 28 B 379 ILE GLU MET LEU GLU ASN GLU PHE SER SER LYS LYS ILE SEQRES 29 B 379 VAL SER GLN TYR GLU GLN ILE TYR ALA ASP LEU ALA GLU SEQRES 30 B 379 PRO GLU HET GMT A 401 23 HET GMT B 401 23 HETNAM GMT (2S)-2-{[2-ACETAMIDO-2-DEOXY-ALPHA-D- HETNAM 2 GMT GLUCOPYRANOSYL]OXY}BUTANEDIOIC ACID HETSYN GMT (2S)-2-{[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D- HETSYN 2 GMT GLUCOPYRANOSYL]OXY}BUTANEDIOIC ACID; (2S)-2-{[2- HETSYN 3 GMT ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOSYL]OXY}BUTANEDIOIC HETSYN 4 GMT ACID; (2S)-2-{[2-ACETAMIDO-2-DEOXY-D- HETSYN 5 GMT GLUCOSYL]OXY}BUTANEDIOIC ACID; (2S)-2-{[2-ACETAMIDO-2- HETSYN 6 GMT DEOXY-GLUCOSYL]OXY}BUTANEDIOIC ACID FORMUL 3 GMT 2(C12 H19 N O10) FORMUL 5 HOH *181(H2 O) HELIX 1 AA1 VAL A 14 GLU A 30 1 17 HELIX 2 AA2 PRO A 70 ASN A 87 1 18 HELIX 3 AA3 PRO A 98 LEU A 110 1 13 HELIX 4 AA4 GLY A 122 ASP A 131 1 10 HELIX 5 AA5 LEU A 134 SER A 144 1 11 HELIX 6 AA6 SER A 152 LYS A 164 1 13 HELIX 7 AA7 ASN A 185 HIS A 193 1 9 HELIX 8 AA8 ARG A 209 LYS A 212 5 4 HELIX 9 AA9 ARG A 213 GLY A 226 1 14 HELIX 10 AB1 GLU A 240 TYR A 251 1 12 HELIX 11 AB2 GLY A 252 ASP A 255 5 4 HELIX 12 AB3 GLU A 267 ILE A 272 1 6 HELIX 13 AB4 GLY A 286 CYS A 295 1 10 HELIX 14 AB5 GLY A 306 ILE A 311 1 6 HELIX 15 AB6 ASP A 324 GLU A 337 1 14 HELIX 16 AB7 ASP A 338 GLU A 356 1 19 HELIX 17 AB8 SER A 358 ALA A 374 1 17 HELIX 18 AB9 GLY B 15 LYS B 31 1 17 HELIX 19 AC1 PRO B 70 GLU B 86 1 17 HELIX 20 AC2 PRO B 98 LYS B 111 1 14 HELIX 21 AC3 GLY B 122 ASP B 131 1 10 HELIX 22 AC4 LEU B 134 SER B 144 1 11 HELIX 23 AC5 SER B 152 ILE B 163 1 12 HELIX 24 AC6 ASN B 185 HIS B 193 1 9 HELIX 25 AC7 ARG B 209 LYS B 212 5 4 HELIX 26 AC8 ARG B 213 GLY B 226 1 14 HELIX 27 AC9 GLU B 240 GLY B 252 1 13 HELIX 28 AD1 ARG B 265 ILE B 272 1 8 HELIX 29 AD2 GLY B 286 CYS B 295 1 10 HELIX 30 AD3 GLY B 306 VAL B 310 5 5 HELIX 31 AD4 ASP B 324 ASP B 338 1 15 HELIX 32 AD5 ASP B 338 ASN B 355 1 18 HELIX 33 AD6 SER B 358 ALA B 374 1 17 SHEET 1 AA1 7 ILE A 53 GLU A 57 0 SHEET 2 AA1 7 GLU A 34 THR A 39 1 N ILE A 35 O HIS A 54 SHEET 3 AA1 7 LYS A 5 THR A 9 1 N ILE A 6 O GLU A 34 SHEET 4 AA1 7 ILE A 90 HIS A 94 1 O ILE A 90 N GLY A 7 SHEET 5 AA1 7 GLY A 115 LEU A 120 1 O VAL A 117 N ALA A 93 SHEET 6 AA1 7 ARG A 147 ALA A 150 1 O THR A 149 N LEU A 120 SHEET 7 AA1 7 ILE A 169 THR A 171 1 O GLU A 170 N VAL A 148 SHEET 1 AA2 6 VAL A 257 LEU A 260 0 SHEET 2 AA2 6 ALA A 230 VAL A 235 1 N LEU A 232 O LEU A 258 SHEET 3 AA2 6 LYS A 200 VAL A 205 1 N HIS A 204 O VAL A 235 SHEET 4 AA2 6 LEU A 275 LEU A 278 1 O LEU A 275 N ILE A 203 SHEET 5 AA2 6 CYS A 299 THR A 302 1 O ILE A 300 N LYS A 276 SHEET 6 AA2 6 PHE A 318 VAL A 320 1 O PHE A 318 N GLY A 301 SHEET 1 AA3 7 ILE B 53 GLU B 57 0 SHEET 2 AA3 7 GLU B 34 THR B 39 1 N ILE B 35 O HIS B 54 SHEET 3 AA3 7 LYS B 5 THR B 9 1 N ILE B 6 O HIS B 36 SHEET 4 AA3 7 ILE B 90 HIS B 94 1 O ILE B 90 N GLY B 7 SHEET 5 AA3 7 GLY B 115 LEU B 120 1 O VAL B 117 N ALA B 93 SHEET 6 AA3 7 ARG B 147 ALA B 150 1 O THR B 149 N THR B 118 SHEET 7 AA3 7 ILE B 169 THR B 171 1 O GLU B 170 N VAL B 148 SHEET 1 AA4 6 VAL B 257 MET B 259 0 SHEET 2 AA4 6 ALA B 230 VAL B 235 1 N LEU B 232 O LEU B 258 SHEET 3 AA4 6 LYS B 200 VAL B 205 1 N HIS B 204 O VAL B 235 SHEET 4 AA4 6 LEU B 275 LEU B 278 1 O LEU B 275 N ILE B 203 SHEET 5 AA4 6 CYS B 299 THR B 302 1 O ILE B 300 N LEU B 278 SHEET 6 AA4 6 PHE B 318 VAL B 320 1 O PHE B 318 N GLY B 301 CISPEP 1 LEU A 97 PRO A 98 0 0.62 CISPEP 2 LEU B 97 PRO B 98 0 -1.64 CRYST1 89.060 163.250 97.246 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010283 0.00000