HEADER LIGASE 03-AUG-15 5D0M TITLE STRUCTURE OF UBE2D2:RNF165:UB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN CARRIER PROTEIN D2,UBIQUITIN-CONJUGATING ENZYME COMPND 5 E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2,UBIQUITIN-PROTEIN COMPND 6 LIGASE D2,P53-REGULATED UBIQUITIN-CONJUGATING ENZYME 1; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RING FINGER PROTEIN 165; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: UNP RESIDUES 255-346; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: POLYUBIQUITIN-B; COMPND 18 CHAIN: B; COMPND 19 FRAGMENT: UNP RESIDUES 1-76; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RNF165; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: UBB; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, UBIQUITIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.WRIGHT,C.L.DAY,P.D.MACE REVDAT 3 20-JAN-16 5D0M 1 JRNL REVDAT 2 30-DEC-15 5D0M 1 JRNL REVDAT 1 09-DEC-15 5D0M 0 JRNL AUTH J.D.WRIGHT,P.D.MACE,C.L.DAY JRNL TITL SECONDARY UBIQUITIN-RING DOCKING ENHANCES ARKADIA AND ARK2C JRNL TITL 2 E3 LIGASE ACTIVITY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 45 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 26656854 JRNL DOI 10.1038/NSMB.3142 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0075 - 3.9759 1.00 2597 172 0.1551 0.1649 REMARK 3 2 3.9759 - 3.1572 1.00 2578 157 0.1730 0.2255 REMARK 3 3 3.1572 - 2.7585 1.00 2616 129 0.1914 0.2461 REMARK 3 4 2.7585 - 2.5064 1.00 2557 139 0.1969 0.2740 REMARK 3 5 2.5064 - 2.3269 1.00 2591 130 0.1891 0.2132 REMARK 3 6 2.3269 - 2.1898 1.00 2576 158 0.1933 0.2404 REMARK 3 7 2.1898 - 2.0801 1.00 2550 149 0.1951 0.2316 REMARK 3 8 2.0801 - 1.9896 1.00 2631 109 0.2128 0.2581 REMARK 3 9 1.9896 - 1.9130 1.00 2533 139 0.2705 0.3336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2265 REMARK 3 ANGLE : 1.080 3069 REMARK 3 CHIRALITY : 0.047 347 REMARK 3 PLANARITY : 0.006 397 REMARK 3 DIHEDRAL : 14.529 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:147) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6131 81.6810 -14.0616 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.2269 REMARK 3 T33: 0.2012 T12: -0.0328 REMARK 3 T13: -0.0047 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.8924 L22: 2.7031 REMARK 3 L33: 4.3294 L12: -0.4022 REMARK 3 L13: 0.9588 L23: -1.3962 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: 0.2227 S13: -0.1363 REMARK 3 S21: 0.0497 S22: -0.1823 S23: -0.0823 REMARK 3 S31: 0.0739 S32: 0.1274 S33: 0.1837 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 258:339) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5807 65.2163 9.0927 REMARK 3 T TENSOR REMARK 3 T11: 0.6549 T22: 0.4272 REMARK 3 T33: 0.4693 T12: -0.0440 REMARK 3 T13: -0.1066 T23: 0.1441 REMARK 3 L TENSOR REMARK 3 L11: 2.5846 L22: 3.5085 REMARK 3 L33: 4.6271 L12: 0.3799 REMARK 3 L13: 0.2543 L23: -1.7520 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.7464 S13: -0.3443 REMARK 3 S21: 0.7351 S22: -0.4128 S23: -0.7666 REMARK 3 S31: 0.3008 S32: 0.4681 S33: 0.3100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 1:76) REMARK 3 ORIGIN FOR THE GROUP (A): -49.7265 65.1420 -6.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.3726 T22: 0.3749 REMARK 3 T33: 0.4734 T12: -0.0832 REMARK 3 T13: -0.0297 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 3.1289 L22: 3.4933 REMARK 3 L33: 2.6399 L12: 1.0358 REMARK 3 L13: -0.4016 L23: -1.1363 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.3290 S13: -0.2308 REMARK 3 S21: -0.0654 S22: 0.1280 S23: 0.7450 REMARK 3 S31: 0.3464 S32: -0.5672 S33: -0.0995 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 31.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SPG BUFFER, PEG 1500, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.12500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.68750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.56250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY C 250 REMARK 465 PRO C 251 REMARK 465 LEU C 252 REMARK 465 GLY C 253 REMARK 465 SER C 254 REMARK 465 GLY C 255 REMARK 465 ALA C 256 REMARK 465 VAL C 257 REMARK 465 LYS C 282 REMARK 465 ASP C 283 REMARK 465 GLU C 284 REMARK 465 GLY C 285 REMARK 465 GLU C 286 REMARK 465 GLU C 287 REMARK 465 SER C 288 REMARK 465 ASP C 289 REMARK 465 THR C 290 REMARK 465 ASP C 291 REMARK 465 GLU C 302 REMARK 465 ASP C 303 REMARK 465 THR C 340 REMARK 465 GLN C 341 REMARK 465 LEU C 342 REMARK 465 GLY C 343 REMARK 465 ALA C 344 REMARK 465 ASP C 345 REMARK 465 SER C 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LEU A 3 CG CD1 CD2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 GLN C 258 CG CD OE1 NE2 REMARK 470 ASN C 259 CG OD1 ND2 REMARK 470 THR C 260 OG1 CG2 REMARK 470 ILE C 261 CG1 CG2 CD1 REMARK 470 ARG C 263 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 264 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 266 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 269 CG CD CE NZ REMARK 470 LYS C 271 CG CD CE NZ REMARK 470 GLU C 292 CG CD OE1 OE2 REMARK 470 LYS C 293 CG CD CE NZ REMARK 470 MET C 300 CG SD CE REMARK 470 GLU C 305 CG CD OE1 OE2 REMARK 470 LEU C 319 CG CD1 CD2 REMARK 470 LYS C 329 CG CD CE NZ REMARK 470 GLU C 339 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 85 O GLY B 76 1.94 REMARK 500 OD1 ASP A 130 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 37.55 39.94 REMARK 500 ARG A 90 -74.82 -126.59 REMARK 500 ALA C 313 0.40 85.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 294 SG REMARK 620 2 CYS C 297 SG 116.9 REMARK 620 3 HIS C 317 ND1 97.9 102.5 REMARK 620 4 CYS C 320 SG 117.6 104.9 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 312 SG REMARK 620 2 HIS C 314 ND1 113.6 REMARK 620 3 CYS C 331 SG 109.1 104.4 REMARK 620 4 CYS C 334 SG 104.8 117.5 107.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D0I RELATED DB: PDB REMARK 900 RELATED ID: 5D0K RELATED DB: PDB DBREF 5D0M A 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 5D0M C 255 346 UNP Q6ZSG1 RN165_HUMAN 255 346 DBREF 5D0M B 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 5D0M GLY A -4 UNP P62837 EXPRESSION TAG SEQADV 5D0M PRO A -3 UNP P62837 EXPRESSION TAG SEQADV 5D0M LEU A -2 UNP P62837 EXPRESSION TAG SEQADV 5D0M GLY A -1 UNP P62837 EXPRESSION TAG SEQADV 5D0M SER A 0 UNP P62837 EXPRESSION TAG SEQADV 5D0M SER A 21 UNP P62837 CYS 21 ENGINEERED MUTATION SEQADV 5D0M ARG A 22 UNP P62837 SER 22 ENGINEERED MUTATION SEQADV 5D0M LYS A 85 UNP P62837 CYS 85 ENGINEERED MUTATION SEQADV 5D0M SER A 107 UNP P62837 CYS 107 ENGINEERED MUTATION SEQADV 5D0M SER A 111 UNP P62837 CYS 111 ENGINEERED MUTATION SEQADV 5D0M GLY C 250 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5D0M PRO C 251 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5D0M LEU C 252 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5D0M GLY C 253 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5D0M SER C 254 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5D0M C UNP Q6ZSG1 ARG 273 DELETION SEQADV 5D0M C UNP Q6ZSG1 ARG 274 DELETION SEQADV 5D0M C UNP Q6ZSG1 PRO 275 DELETION SEQADV 5D0M C UNP Q6ZSG1 GLN 276 DELETION SEQADV 5D0M C UNP Q6ZSG1 ASP 277 DELETION SEQADV 5D0M C UNP Q6ZSG1 GLY 278 DELETION SEQADV 5D0M C UNP Q6ZSG1 LYS 279 DELETION SEQADV 5D0M C UNP Q6ZSG1 GLY 280 DELETION SEQADV 5D0M ALA C 313 UNP Q6ZSG1 MET 313 ENGINEERED MUTATION SEQRES 1 A 152 GLY PRO LEU GLY SER MET ALA LEU LYS ARG ILE HIS LYS SEQRES 2 A 152 GLU LEU ASN ASP LEU ALA ARG ASP PRO PRO ALA GLN SER SEQRES 3 A 152 ARG ALA GLY PRO VAL GLY ASP ASP MET PHE HIS TRP GLN SEQRES 4 A 152 ALA THR ILE MET GLY PRO ASN ASP SER PRO TYR GLN GLY SEQRES 5 A 152 GLY VAL PHE PHE LEU THR ILE HIS PHE PRO THR ASP TYR SEQRES 6 A 152 PRO PHE LYS PRO PRO LYS VAL ALA PHE THR THR ARG ILE SEQRES 7 A 152 TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE LYS LEU SEQRES 8 A 152 ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR ILE SEQRES 9 A 152 SER LYS VAL LEU LEU SER ILE SER SER LEU LEU SER ASP SEQRES 10 A 152 PRO ASN PRO ASP ASP PRO LEU VAL PRO GLU ILE ALA ARG SEQRES 11 A 152 ILE TYR LYS THR ASP ARG GLU LYS TYR ASN ARG ILE ALA SEQRES 12 A 152 ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 C 87 GLY PRO LEU GLY SER GLY ALA VAL GLN ASN THR ILE GLU SEQRES 2 C 87 ARG PHE THR PHE PRO HIS LYS TYR LYS LYS ASP GLU GLY SEQRES 3 C 87 GLU GLU SER ASP THR ASP GLU LYS CYS THR ILE CYS LEU SEQRES 4 C 87 SER MET LEU GLU ASP GLY GLU ASP VAL ARG ARG LEU PRO SEQRES 5 C 87 CYS ALA HIS LEU PHE HIS GLN LEU CYS VAL ASP GLN TRP SEQRES 6 C 87 LEU ALA MET SER LYS LYS CYS PRO ILE CYS ARG VAL ASP SEQRES 7 C 87 ILE GLU THR GLN LEU GLY ALA ASP SER SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET PO4 A 201 5 HET ZN C 401 1 HET ZN C 402 1 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION FORMUL 4 PO4 O4 P 3- FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 MET A 1 ASP A 16 1 16 HELIX 2 AA2 LEU A 86 ARG A 90 5 5 HELIX 3 AA3 THR A 98 ASP A 112 1 15 HELIX 4 AA4 VAL A 120 ASP A 130 1 11 HELIX 5 AA5 ASP A 130 ALA A 146 1 17 HELIX 6 AA6 ASN C 259 PHE C 264 1 6 HELIX 7 AA7 GLN C 318 ALA C 326 1 9 HELIX 8 AA8 THR B 22 GLY B 35 1 14 HELIX 9 AA9 PRO B 37 ASP B 39 5 3 SHEET 1 AA1 4 SER A 21 VAL A 26 0 SHEET 2 AA1 4 ASP A 29 MET A 38 -1 O HIS A 32 N VAL A 26 SHEET 3 AA1 4 VAL A 49 HIS A 55 -1 O LEU A 52 N ALA A 35 SHEET 4 AA1 4 LYS A 66 PHE A 69 -1 O LYS A 66 N HIS A 55 SHEET 1 AA2 3 PHE C 266 LYS C 269 0 SHEET 2 AA2 3 ASP C 306 ARG C 309 -1 O VAL C 307 N HIS C 268 SHEET 3 AA2 3 LEU C 315 HIS C 317 -1 O PHE C 316 N ARG C 308 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA3 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK NZ LYS A 85 C GLY B 76 1555 1555 1.32 LINK SG CYS C 294 ZN ZN C 402 1555 1555 2.29 LINK SG CYS C 297 ZN ZN C 402 1555 1555 2.34 LINK SG CYS C 312 ZN ZN C 401 1555 1555 2.32 LINK ND1 HIS C 314 ZN ZN C 401 1555 1555 2.07 LINK ND1 HIS C 317 ZN ZN C 402 1555 1555 2.09 LINK SG CYS C 320 ZN ZN C 402 1555 1555 2.35 LINK SG CYS C 331 ZN ZN C 401 1555 1555 2.34 LINK SG CYS C 334 ZN ZN C 401 1555 1555 2.28 CISPEP 1 TYR A 60 PRO A 61 0 7.00 SITE 1 AC1 4 LEU A 104 SER A 108 HOH A 326 HIS B 68 SITE 1 AC2 4 CYS C 312 HIS C 314 CYS C 331 CYS C 334 SITE 1 AC3 4 CYS C 294 CYS C 297 HIS C 317 CYS C 320 CRYST1 62.620 62.620 82.250 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012158 0.00000