HEADER HYDROLASE 04-AUG-15 5D1C TITLE CRYSTAL STRUCTURE OF D233G-Y306F HDAC8 IN COMPLEX WITH A TETRAPEPTIDE TITLE 2 SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HD8; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HDAC8 FLUOR DE LYS TETRAPEPTIDE SUBSTRATE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC8, HDACL1, CDA07; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHD2-XA-HIS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 14 ORGANISM_TAXID: 32644 KEYWDS HYDROLASE, HISTONE DEACETYLASE, ARGINASE/DEACETYLASE FOLD, ENZYME KEYWDS 2 SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.DECROOS,N.H.CHRISTIANSON,L.E.GULLETT,C.M.BOWMAN,K.E.CHRISTIANSON, AUTHOR 2 M.A.DEARDORFF,D.W.CHRISTIANSON REVDAT 7 15-NOV-23 5D1C 1 LINK REVDAT 6 27-SEP-23 5D1C 1 LINK REVDAT 5 25-DEC-19 5D1C 1 REMARK REVDAT 4 13-SEP-17 5D1C 1 JRNL REMARK REVDAT 3 11-NOV-15 5D1C 1 JRNL REVDAT 2 28-OCT-15 5D1C 1 JRNL REVDAT 1 21-OCT-15 5D1C 0 JRNL AUTH C.DECROOS,N.H.CHRISTIANSON,L.E.GULLETT,C.M.BOWMAN, JRNL AUTH 2 K.E.CHRISTIANSON,M.A.DEARDORFF,D.W.CHRISTIANSON JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF HDAC8 MUTANTS JRNL TITL 2 ASSOCIATED WITH CORNELIA DE LANGE SYNDROME SPECTRUM JRNL TITL 3 DISORDERS. JRNL REF BIOCHEMISTRY V. 54 6501 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26463496 JRNL DOI 10.1021/ACS.BIOCHEM.5B00881 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1833 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 159859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 8011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3747 - 4.4162 0.98 5308 299 0.1413 0.1682 REMARK 3 2 4.4162 - 3.5057 1.00 5173 298 0.1224 0.1377 REMARK 3 3 3.5057 - 3.0627 1.00 5159 269 0.1408 0.1646 REMARK 3 4 3.0627 - 2.7827 1.00 5156 265 0.1490 0.1713 REMARK 3 5 2.7827 - 2.5833 1.00 5092 295 0.1468 0.1608 REMARK 3 6 2.5833 - 2.4310 1.00 5108 253 0.1510 0.1615 REMARK 3 7 2.4310 - 2.3093 1.00 5066 296 0.1447 0.1610 REMARK 3 8 2.3093 - 2.2088 1.00 5099 262 0.1428 0.1557 REMARK 3 9 2.2088 - 2.1237 1.00 5091 241 0.1424 0.1562 REMARK 3 10 2.1237 - 2.0504 1.00 5097 253 0.1479 0.1743 REMARK 3 11 2.0504 - 1.9863 1.00 5100 241 0.1474 0.1757 REMARK 3 12 1.9863 - 1.9296 1.00 5045 266 0.1488 0.1852 REMARK 3 13 1.9296 - 1.8788 1.00 5077 261 0.1430 0.1632 REMARK 3 14 1.8788 - 1.8329 1.00 5010 295 0.1390 0.1602 REMARK 3 15 1.8329 - 1.7912 1.00 5075 277 0.1419 0.1618 REMARK 3 16 1.7912 - 1.7531 1.00 5016 282 0.1434 0.1683 REMARK 3 17 1.7531 - 1.7181 1.00 5034 271 0.1466 0.1788 REMARK 3 18 1.7181 - 1.6856 1.00 5020 280 0.1460 0.1745 REMARK 3 19 1.6856 - 1.6555 1.00 5092 241 0.1431 0.1599 REMARK 3 20 1.6555 - 1.6275 1.00 4978 293 0.1493 0.1858 REMARK 3 21 1.6275 - 1.6012 1.00 5070 251 0.1546 0.1695 REMARK 3 22 1.6012 - 1.5766 1.00 5045 244 0.1582 0.1910 REMARK 3 23 1.5766 - 1.5534 1.00 4998 277 0.1637 0.1924 REMARK 3 24 1.5534 - 1.5315 1.00 5051 232 0.1641 0.1943 REMARK 3 25 1.5315 - 1.5108 1.00 5010 264 0.1696 0.1767 REMARK 3 26 1.5108 - 1.4912 1.00 5056 245 0.1881 0.2203 REMARK 3 27 1.4912 - 1.4725 1.00 5041 278 0.1915 0.1993 REMARK 3 28 1.4725 - 1.4548 1.00 4991 275 0.2064 0.2348 REMARK 3 29 1.4548 - 1.4379 1.00 5009 266 0.2328 0.2710 REMARK 3 30 1.4379 - 1.4217 0.95 4781 241 0.2547 0.2680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6259 REMARK 3 ANGLE : 1.272 8555 REMARK 3 CHIRALITY : 0.082 922 REMARK 3 PLANARITY : 0.007 1117 REMARK 3 DIHEDRAL : 12.195 2300 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4761 -0.6762 -6.1788 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1239 REMARK 3 T33: 0.1252 T12: 0.0074 REMARK 3 T13: 0.0441 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 5.8076 L22: 2.2594 REMARK 3 L33: 2.8828 L12: -0.0151 REMARK 3 L13: 0.0561 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.3276 S13: -0.0729 REMARK 3 S21: -0.2761 S22: 0.0280 S23: -0.1145 REMARK 3 S31: -0.1676 S32: -0.0883 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8296 2.3395 -3.1655 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1665 REMARK 3 T33: 0.1805 T12: -0.0156 REMARK 3 T13: 0.0637 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.7695 L22: 1.5722 REMARK 3 L33: 0.7071 L12: -0.3963 REMARK 3 L13: -0.1786 L23: 0.2202 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.1565 S13: 0.0328 REMARK 3 S21: -0.2210 S22: 0.0494 S23: -0.3809 REMARK 3 S31: -0.0763 S32: 0.1702 S33: -0.0756 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5223 -18.9319 -11.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.2313 REMARK 3 T33: 0.1830 T12: 0.0216 REMARK 3 T13: 0.0156 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 4.3755 L22: 2.2723 REMARK 3 L33: 1.7179 L12: -1.6503 REMARK 3 L13: 1.6453 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: 0.1824 S12: 0.6692 S13: -0.2070 REMARK 3 S21: -0.4261 S22: -0.1964 S23: -0.0753 REMARK 3 S31: 0.3589 S32: 0.2498 S33: 0.0250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4703 -11.8817 -8.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1467 REMARK 3 T33: 0.1222 T12: -0.0081 REMARK 3 T13: 0.0199 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 2.2820 L22: 1.4587 REMARK 3 L33: 1.5225 L12: -0.0538 REMARK 3 L13: -0.2852 L23: 0.2663 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: 0.3977 S13: -0.1386 REMARK 3 S21: -0.1911 S22: -0.0202 S23: 0.0767 REMARK 3 S31: 0.1014 S32: -0.1564 S33: 0.0577 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4192 -16.5427 7.0857 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.0865 REMARK 3 T33: 0.1300 T12: 0.0238 REMARK 3 T13: 0.0147 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.8579 L22: 1.1559 REMARK 3 L33: 1.0390 L12: -0.4548 REMARK 3 L13: 0.0927 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.0058 S13: -0.1401 REMARK 3 S21: 0.0076 S22: 0.0164 S23: -0.0722 REMARK 3 S31: 0.2174 S32: 0.0388 S33: 0.0195 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6622 -3.0245 13.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.1223 REMARK 3 T33: 0.1108 T12: 0.0231 REMARK 3 T13: -0.0239 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5418 L22: 1.5289 REMARK 3 L33: 0.8467 L12: -0.2655 REMARK 3 L13: 0.0797 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: -0.1008 S13: -0.0261 REMARK 3 S21: 0.1612 S22: 0.0473 S23: -0.1863 REMARK 3 S31: 0.0264 S32: 0.1147 S33: 0.0233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6113 -2.2391 20.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1666 REMARK 3 T33: 0.1073 T12: 0.0282 REMARK 3 T13: 0.0066 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.5132 L22: 2.0453 REMARK 3 L33: 1.3144 L12: -0.1341 REMARK 3 L13: -0.0379 L23: -0.9012 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.1606 S13: -0.0441 REMARK 3 S21: 0.2371 S22: 0.1761 S23: 0.1116 REMARK 3 S31: 0.1024 S32: -0.0421 S33: -0.1121 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2613 1.8056 -8.9931 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1577 REMARK 3 T33: 0.1406 T12: -0.0137 REMARK 3 T13: -0.0328 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 1.3025 L22: 2.3613 REMARK 3 L33: 1.0314 L12: 0.3152 REMARK 3 L13: 0.1998 L23: -0.5589 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.2172 S13: -0.1273 REMARK 3 S21: -0.3361 S22: 0.0110 S23: 0.2218 REMARK 3 S31: 0.1839 S32: -0.0824 S33: -0.0216 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8448 21.2390 -11.0220 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.2071 REMARK 3 T33: 0.1207 T12: 0.0100 REMARK 3 T13: 0.0020 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 2.6766 L22: 2.6517 REMARK 3 L33: 2.1528 L12: -0.4153 REMARK 3 L13: 0.3948 L23: 0.1915 REMARK 3 S TENSOR REMARK 3 S11: 0.1666 S12: 0.4904 S13: 0.2160 REMARK 3 S21: -0.3146 S22: -0.3007 S23: -0.0989 REMARK 3 S31: -0.3355 S32: 0.1753 S33: -0.0204 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3289 13.8305 -5.6322 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.0978 REMARK 3 T33: 0.0617 T12: 0.0099 REMARK 3 T13: -0.0023 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.6692 L22: 1.5814 REMARK 3 L33: 1.5106 L12: -0.2234 REMARK 3 L13: 0.1691 L23: -0.2912 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.2005 S13: 0.0658 REMARK 3 S21: -0.1277 S22: -0.0674 S23: -0.0601 REMARK 3 S31: 0.0046 S32: 0.1459 S33: 0.0232 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8815 18.9054 9.2173 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0793 REMARK 3 T33: 0.0822 T12: 0.0144 REMARK 3 T13: 0.0050 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.2656 L22: 1.5094 REMARK 3 L33: 1.1049 L12: -0.8278 REMARK 3 L13: -0.2031 L23: -0.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.0978 S13: 0.1087 REMARK 3 S21: 0.1417 S22: 0.0914 S23: 0.0172 REMARK 3 S31: -0.1388 S32: -0.0333 S33: -0.0112 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9586 2.9688 9.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.1180 REMARK 3 T33: 0.1296 T12: -0.0014 REMARK 3 T13: 0.0307 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.8214 L22: 1.3905 REMARK 3 L33: 0.7541 L12: -0.1693 REMARK 3 L13: -0.0274 L23: -0.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.0985 S13: -0.1176 REMARK 3 S21: 0.1348 S22: 0.0665 S23: 0.2148 REMARK 3 S31: 0.0812 S32: -0.1286 S33: 0.0128 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 337 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1256 1.8721 17.9476 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.1974 REMARK 3 T33: 0.1301 T12: 0.0142 REMARK 3 T13: 0.0334 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.8601 L22: 2.2884 REMARK 3 L33: 1.4436 L12: -0.2726 REMARK 3 L13: 0.0291 L23: 0.8821 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.2779 S13: -0.1186 REMARK 3 S21: 0.3790 S22: 0.1273 S23: 0.0208 REMARK 3 S31: 0.0533 S32: -0.0927 S33: -0.0749 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 159962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 44.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.11200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 8.0), 10% (W/V) PEG REMARK 280 3350, 4 MM TCEP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.51550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.32800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.96800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.32800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.51550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.96800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 ILE A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 ARG A 381 REMARK 465 GLY A 382 REMARK 465 SER A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 SER B 13 REMARK 465 ILE B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 ARG B 381 REMARK 465 GLY B 382 REMARK 465 SER B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 ARG A 55 CZ NH1 NH2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 LYS A 168 CE NZ REMARK 470 LYS A 221 CE NZ REMARK 470 GLU A 238 CD OE1 OE2 REMARK 470 LYS A 370 CE NZ REMARK 470 LYS A 374 CE NZ REMARK 470 LEU B 14 CG CD1 CD2 REMARK 470 LYS B 52 CE NZ REMARK 470 ARG B 55 NE CZ NH1 NH2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 LYS B 221 CD CE NZ REMARK 470 ARG B 223 CZ NH1 NH2 REMARK 470 LYS B 249 CE NZ REMARK 470 LYS B 374 CE NZ REMARK 470 VAL B 377 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 34 50.40 -145.20 REMARK 500 TYR A 224 2.82 85.74 REMARK 500 SER A 276 -76.55 -112.11 REMARK 500 ILE B 34 48.79 -140.79 REMARK 500 LYS B 36 -4.62 74.44 REMARK 500 PHE B 70 -51.04 -120.41 REMARK 500 TYR B 224 -0.24 87.48 REMARK 500 SER B 276 -72.03 -110.04 REMARK 500 HIS B 334 -180.00 -172.47 REMARK 500 CYS B 352 36.74 -96.26 REMARK 500 CYS B 352 37.73 -97.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 899 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 890 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 O REMARK 620 2 ASP A 176 OD1 72.2 REMARK 620 3 ASP A 178 O 108.0 107.0 REMARK 620 4 HIS A 180 O 163.7 92.7 81.9 REMARK 620 5 SER A 199 OG 85.2 100.7 151.8 91.8 REMARK 620 6 LEU A 200 O 77.4 146.7 69.8 118.6 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 HIS A 180 ND1 104.4 REMARK 620 3 ASP A 267 OD2 102.4 94.4 REMARK 620 4 HOH A 547 O 86.2 94.2 165.9 REMARK 620 5 ALY C 5 OH 143.9 110.0 86.0 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 189 O REMARK 620 2 THR A 192 O 78.3 REMARK 620 3 VAL A 195 O 115.0 82.8 REMARK 620 4 TYR A 225 O 157.8 118.8 82.9 REMARK 620 5 HOH A 588 O 88.3 95.1 155.4 76.6 REMARK 620 6 HOH A 710 O 71.5 149.4 114.3 89.5 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 O REMARK 620 2 ASP B 176 OD1 72.3 REMARK 620 3 ASP B 178 O 108.9 106.5 REMARK 620 4 HIS B 180 O 163.8 92.9 81.1 REMARK 620 5 SER B 199 OG 84.6 101.1 151.8 92.2 REMARK 620 6 LEU B 200 O 77.7 146.8 70.2 118.2 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD2 REMARK 620 2 HIS B 180 ND1 104.7 REMARK 620 3 ASP B 267 OD2 102.0 95.1 REMARK 620 4 HOH B 554 O 86.4 93.3 166.2 REMARK 620 5 ALY D 5 OH 142.9 110.7 85.7 81.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 189 O REMARK 620 2 THR B 192 O 75.4 REMARK 620 3 VAL B 195 O 119.2 85.3 REMARK 620 4 TYR B 225 O 155.7 121.4 81.8 REMARK 620 5 HOH B 575 O 86.8 93.6 152.5 75.4 REMARK 620 6 HOH B 719 O 72.0 147.1 114.8 88.5 80.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D1B RELATED DB: PDB REMARK 900 RELATED ID: 5D1D RELATED DB: PDB DBREF 5D1C A 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 5D1C B 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 5D1C C 1 6 PDB 5D1C 5D1C 1 6 DBREF 5D1C D 1 6 PDB 5D1C 5D1C 1 6 SEQADV 5D1C GLY A 233 UNP Q9BY41 ASP 233 ENGINEERED MUTATION SEQADV 5D1C PHE A 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQADV 5D1C ILE A 378 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLU A 379 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLY A 380 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C ARG A 381 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLY A 382 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C SER A 383 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 384 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 385 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 386 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 387 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 388 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS A 389 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLY B 233 UNP Q9BY41 ASP 233 ENGINEERED MUTATION SEQADV 5D1C PHE B 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQADV 5D1C ILE B 378 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLU B 379 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLY B 380 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C ARG B 381 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C GLY B 382 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C SER B 383 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 384 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 385 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 386 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 387 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 388 UNP Q9BY41 EXPRESSION TAG SEQADV 5D1C HIS B 389 UNP Q9BY41 EXPRESSION TAG SEQRES 1 A 389 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 A 389 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 A 389 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 A 389 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 A 389 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 A 389 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 A 389 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 A 389 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 A 389 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 A 389 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 A 389 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 A 389 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 A 389 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 A 389 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 A 389 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 A 389 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 A 389 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 A 389 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN GLY GLY SEQRES 19 A 389 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 A 389 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 A 389 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 A 389 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 A 389 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 A 389 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 A 389 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 A 389 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 A 389 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 A 389 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 A 389 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 A 389 ILE GLU GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 389 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 B 389 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 B 389 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 B 389 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 B 389 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 B 389 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 B 389 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 B 389 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 B 389 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 B 389 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 B 389 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 B 389 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 B 389 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 B 389 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 B 389 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 B 389 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 B 389 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 B 389 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN GLY GLY SEQRES 19 B 389 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 B 389 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 B 389 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 B 389 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 B 389 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 B 389 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 B 389 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 B 389 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 B 389 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 B 389 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 B 389 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 B 389 ILE GLU GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 6 ACE ARG HIS ALY ALY MCM SEQRES 1 D 6 ACE ARG HIS ALY ALY MCM HET ACE C 1 3 HET ALY C 4 12 HET ALY C 5 12 HET MCM C 6 13 HET ACE D 1 3 HET ALY D 4 12 HET ALY D 5 12 HET MCM D 6 13 HET K A 401 1 HET K A 402 1 HET ZN A 403 1 HET K B 401 1 HET K B 402 1 HET ZN B 403 1 HET GOL B 404 6 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM MCM 7-AMINO-4-METHYL-CHROMEN-2-ONE HETNAM K POTASSIUM ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN MCM 7-AMINO-4-METHYLCOUMARIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 3 MCM 2(C10 H9 N O2) FORMUL 5 K 4(K 1+) FORMUL 7 ZN 2(ZN 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *811(H2 O) HELIX 1 AA1 SER A 21 ASP A 29 1 9 HELIX 2 AA2 LYS A 36 TYR A 48 1 13 HELIX 3 AA3 ALA A 49 MET A 54 5 6 HELIX 4 AA4 SER A 63 ALA A 68 1 6 HELIX 5 AA5 THR A 72 GLN A 84 1 13 HELIX 6 AA6 GLY A 107 ASP A 128 1 22 HELIX 7 AA7 ASN A 156 ARG A 166 1 11 HELIX 8 AA8 GLY A 182 PHE A 189 1 8 HELIX 9 AA9 LEU A 219 ARG A 223 5 5 HELIX 10 AB1 GLN A 236 ASN A 256 1 21 HELIX 11 AB2 GLY A 265 ILE A 269 5 5 HELIX 12 AB3 THR A 280 GLN A 293 1 14 HELIX 13 AB4 ASN A 307 GLY A 324 1 18 HELIX 14 AB5 PHE A 336 GLY A 341 5 6 HELIX 15 AB6 GLU A 358 LYS A 374 1 17 HELIX 16 AB7 SER B 21 ASP B 29 1 9 HELIX 17 AB8 LYS B 36 TYR B 48 1 13 HELIX 18 AB9 ALA B 49 MET B 54 5 6 HELIX 19 AC1 SER B 63 ALA B 68 1 6 HELIX 20 AC2 THR B 72 GLN B 84 1 13 HELIX 21 AC3 GLY B 107 ASP B 128 1 22 HELIX 22 AC4 ASN B 156 ARG B 166 1 11 HELIX 23 AC5 GLY B 182 PHE B 189 1 8 HELIX 24 AC6 LEU B 219 ARG B 223 5 5 HELIX 25 AC7 GLN B 236 ASN B 256 1 21 HELIX 26 AC8 GLY B 265 ILE B 269 5 5 HELIX 27 AC9 THR B 280 GLN B 293 1 14 HELIX 28 AD1 ASN B 307 GLY B 324 1 18 HELIX 29 AD2 PHE B 336 GLY B 341 5 6 HELIX 30 AD3 GLU B 358 LYS B 374 1 17 SHEET 1 AA1 8 ARG A 55 VAL A 57 0 SHEET 2 AA1 8 VAL A 17 ILE A 19 1 N TYR A 18 O ARG A 55 SHEET 3 AA1 8 VAL A 133 ASN A 136 1 O ILE A 135 N ILE A 19 SHEET 4 AA1 8 ALA A 297 LEU A 301 1 O ILE A 300 N ASN A 136 SHEET 5 AA1 8 ALA A 259 GLN A 263 1 N LEU A 262 O LEU A 299 SHEET 6 AA1 8 ILE A 172 ASP A 176 1 N VAL A 175 O VAL A 261 SHEET 7 AA1 8 VAL A 195 LYS A 202 1 O MET A 196 N TYR A 174 SHEET 8 AA1 8 SER A 226 ILE A 231 1 O VAL A 227 N THR A 197 SHEET 1 AA2 8 ARG B 55 VAL B 57 0 SHEET 2 AA2 8 VAL B 17 ILE B 19 1 N TYR B 18 O ARG B 55 SHEET 3 AA2 8 VAL B 133 ASN B 136 1 O ILE B 135 N ILE B 19 SHEET 4 AA2 8 ALA B 297 LEU B 301 1 O ILE B 300 N ASN B 136 SHEET 5 AA2 8 ALA B 259 GLN B 263 1 N LEU B 262 O LEU B 299 SHEET 6 AA2 8 ILE B 172 ASP B 176 1 N VAL B 175 O VAL B 261 SHEET 7 AA2 8 VAL B 195 LYS B 202 1 O VAL B 198 N ASP B 176 SHEET 8 AA2 8 SER B 226 ILE B 231 1 O VAL B 227 N THR B 197 LINK C ACE C 1 N ARG C 2 1555 1555 1.33 LINK C HIS C 3 N ALY C 4 1555 1555 1.33 LINK C ALY C 4 N ALY C 5 1555 1555 1.34 LINK C ALY C 5 N MCM C 6 1555 1555 1.34 LINK C ACE D 1 N ARG D 2 1555 1555 1.33 LINK C HIS D 3 N ALY D 4 1555 1555 1.33 LINK C ALY D 4 N ALY D 5 1555 1555 1.34 LINK C ALY D 5 N MCM D 6 1555 1555 1.35 LINK O ASP A 176 K K A 401 1555 1555 2.84 LINK OD1 ASP A 176 K K A 401 1555 1555 2.67 LINK O ASP A 178 K K A 401 1555 1555 2.70 LINK OD2 ASP A 178 ZN ZN A 403 1555 1555 1.98 LINK O HIS A 180 K K A 401 1555 1555 2.77 LINK ND1 HIS A 180 ZN ZN A 403 1555 1555 2.10 LINK O PHE A 189 K K A 402 1555 1555 2.64 LINK O THR A 192 K K A 402 1555 1555 2.80 LINK O VAL A 195 K K A 402 1555 1555 2.60 LINK OG SER A 199 K K A 401 1555 1555 2.91 LINK O LEU A 200 K K A 401 1555 1555 2.68 LINK O TYR A 225 K K A 402 1555 1555 3.03 LINK OD2 ASP A 267 ZN ZN A 403 1555 1555 2.03 LINK K K A 402 O HOH A 588 1555 1555 2.71 LINK K K A 402 O HOH A 710 1555 1555 2.87 LINK ZN ZN A 403 O HOH A 547 1555 1555 2.11 LINK ZN ZN A 403 OH ALY C 5 1555 1555 2.08 LINK O ASP B 176 K K B 401 1555 1555 2.82 LINK OD1 ASP B 176 K K B 401 1555 1555 2.67 LINK O ASP B 178 K K B 401 1555 1555 2.69 LINK OD2 ASP B 178 ZN ZN B 403 1555 1555 1.98 LINK O HIS B 180 K K B 401 1555 1555 2.73 LINK ND1 HIS B 180 ZN ZN B 403 1555 1555 2.11 LINK O PHE B 189 K K B 402 1555 1555 2.65 LINK O THR B 192 K K B 402 1555 1555 2.79 LINK O VAL B 195 K K B 402 1555 1555 2.61 LINK OG SER B 199 K K B 401 1555 1555 2.87 LINK O LEU B 200 K K B 401 1555 1555 2.69 LINK O TYR B 225 K K B 402 1555 1555 2.94 LINK OD2 ASP B 267 ZN ZN B 403 1555 1555 2.03 LINK K K B 402 O HOH B 575 1555 1555 2.75 LINK K K B 402 O HOH B 719 1555 1555 2.88 LINK ZN ZN B 403 O HOH B 554 1555 1555 2.10 LINK ZN ZN B 403 OH ALY D 5 1555 1555 2.09 CISPEP 1 PHE A 208 PRO A 209 0 -3.25 CISPEP 2 GLY A 341 PRO A 342 0 2.51 CISPEP 3 PHE B 208 PRO B 209 0 -1.96 CISPEP 4 GLY B 341 PRO B 342 0 4.78 SITE 1 AC1 4 ASP A 176 ASP A 178 SER A 199 LEU A 200 SITE 1 AC2 6 PHE A 189 THR A 192 VAL A 195 TYR A 225 SITE 2 AC2 6 HOH A 588 HOH A 710 SITE 1 AC3 3 ASP A 178 ASP A 267 HOH A 547 SITE 1 AC4 4 ASP B 176 ASP B 178 SER B 199 LEU B 200 SITE 1 AC5 6 PHE B 189 THR B 192 VAL B 195 TYR B 225 SITE 2 AC5 6 HOH B 575 HOH B 719 SITE 1 AC6 3 ASP B 178 ASP B 267 HOH B 554 SITE 1 AC7 6 LYS B 145 GLU B 148 SER B 150 HOH B 546 SITE 2 AC7 6 HOH B 581 HOH B 664 CRYST1 83.031 97.936 104.656 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009555 0.00000