HEADER HYDROLASE/HYDROLASE INHIBITOR 04-AUG-15 5D1U TITLE ANTHRAX TOXIN LETHAL FACTOR WITH HYDROXAMIC ACID INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 298-809; COMPND 5 SYNONYM: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT; COMPND 6 EC: 3.4.24.83; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG10 KEYWDS ANTHRAX TOXIN, LETHAL FACTOR, METALLOPROTEINASE, METALLOPROTEASE, KEYWDS 2 STRUCTURAL DYNAMICS, LIGAND-INDUCED CONFORMATIONAL CHANGE, KEYWDS 3 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MAIZE,B.C.FINZEL REVDAT 5 27-SEP-23 5D1U 1 REMARK REVDAT 4 11-DEC-19 5D1U 1 REMARK REVDAT 3 04-OCT-17 5D1U 1 REMARK REVDAT 2 25-NOV-15 5D1U 1 JRNL REMARK REVDAT 1 11-NOV-15 5D1U 0 JRNL AUTH E.K.KURBANOV,T.L.CHIU,J.SOLBERG,S.FRANCIS,K.M.MAIZE, JRNL AUTH 2 J.FERNANDEZ,R.L.JOHNSON,J.E.HAWKINSON,M.A.WALTERS, JRNL AUTH 3 B.C.FINZEL,E.A.AMIN JRNL TITL PROBING THE S2' SUBSITE OF THE ANTHRAX TOXIN LETHAL FACTOR JRNL TITL 2 USING NOVEL N-ALKYLATED HYDROXAMATES. JRNL REF J.MED.CHEM. V. 58 8723 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26492514 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01446 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6361 - 4.8716 1.00 2983 173 0.1812 0.2074 REMARK 3 2 4.8716 - 3.8678 1.00 2848 154 0.1709 0.2504 REMARK 3 3 3.8678 - 3.3792 1.00 2840 153 0.1978 0.2529 REMARK 3 4 3.3792 - 3.0703 1.00 2821 152 0.2475 0.3195 REMARK 3 5 3.0703 - 2.8503 1.00 2821 124 0.2449 0.3592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3901 REMARK 3 ANGLE : 1.206 5286 REMARK 3 CHIRALITY : 0.045 592 REMARK 3 PLANARITY : 0.006 690 REMARK 3 DIHEDRAL : 15.865 1420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000208120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 77.293 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-16% PEG 8K, 50 MM BIS-TRIS, 100 MM REMARK 280 MAGNESIUM ACETATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.96400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.24400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.64650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.24400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.96400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.64650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 262 REMARK 465 ASN A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 SER A 266 REMARK 465 ARG A 346 REMARK 465 ASP A 347 REMARK 465 SER A 348 REMARK 465 LEU A 349 REMARK 465 SER A 350 REMARK 465 GLU A 351 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 LYS A 354 REMARK 465 GLU A 355 REMARK 465 LEU A 356 REMARK 465 LEU A 357 REMARK 465 ASN A 358 REMARK 465 ARG A 359 REMARK 465 ILE A 360 REMARK 465 GLN A 361 REMARK 465 VAL A 362 REMARK 465 ASP A 363 REMARK 465 SER A 364 REMARK 465 SER A 365 REMARK 465 ASN A 366 REMARK 465 PRO A 367 REMARK 465 LEU A 777 REMARK 465 VAL A 778 REMARK 465 PRO A 779 REMARK 465 ARG A 780 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ASP A 305 CG OD1 OD2 REMARK 470 ASP A 306 CG OD1 OD2 REMARK 470 ILE A 307 CG1 CG2 CD1 REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 HIS A 309 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 310 OG REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 SER A 312 OG REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 322 CG1 CG2 CD1 REMARK 470 GLN A 323 CG CD OE1 NE2 REMARK 470 ILE A 324 CG1 CG2 CD1 REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 SER A 326 OG REMARK 470 SER A 327 OG REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 PHE A 329 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 330 CG CD1 CD2 REMARK 470 SER A 331 OG REMARK 470 THR A 332 OG1 CG2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 PHE A 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 338 CG CD1 CD2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLN A 342 CG CD OE1 NE2 REMARK 470 ILE A 343 CG1 CG2 CD1 REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 ILE A 345 CG1 CG2 CD1 REMARK 470 LEU A 368 CG CD1 CD2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 LYS A 377 CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 ASP A 456 CG OD1 OD2 REMARK 470 SER A 457 OG REMARK 470 THR A 458 OG1 CG2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 LYS A 656 CG CD CE NZ REMARK 470 ASP A 701 CG OD1 OD2 REMARK 470 LYS A 702 CG CD CE NZ REMARK 470 GLN A 704 CG CD OE1 NE2 REMARK 470 LYS A 771 CG CD CE NZ REMARK 470 ASN A 775 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 319 -75.95 -76.49 REMARK 500 LYS A 320 -14.61 -46.96 REMARK 500 GLN A 323 82.25 -67.30 REMARK 500 SER A 369 83.18 -159.13 REMARK 500 ASN A 405 126.35 -36.42 REMARK 500 ASN A 474 57.74 -115.24 REMARK 500 ASN A 482 -165.75 -121.20 REMARK 500 GLU A 515 151.57 -44.99 REMARK 500 SER A 655 178.26 175.72 REMARK 500 GLU A 676 25.68 82.08 REMARK 500 GLU A 720 -70.26 -88.81 REMARK 500 LEU A 725 -145.10 -95.54 REMARK 500 MET A 744 0.85 -68.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 56P A 801 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 686 NE2 REMARK 620 2 HIS A 690 NE2 94.5 REMARK 620 3 GLU A 735 OE1 96.8 118.2 REMARK 620 4 56P A 801 O5 117.5 95.2 130.1 REMARK 620 5 56P A 801 O3 106.3 158.5 65.4 70.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 56P A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YQY RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKQ RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKR RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKS RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKT RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKU RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKV RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE REMARK 900 INHIBITOR IN A P212121 SPACEGROUP REMARK 900 RELATED ID: 4PKW RELATED DB: PDB REMARK 900 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH GM6001 IN A REMARK 900 P212121 SPACEGROUP DBREF 5D1U A 265 776 UNP P15917 LEF_BACAN 298 809 SEQADV 5D1U SER A 262 UNP P15917 EXPRESSION TAG SEQADV 5D1U ASN A 263 UNP P15917 EXPRESSION TAG SEQADV 5D1U ALA A 264 UNP P15917 EXPRESSION TAG SEQADV 5D1U SER A 266 UNP P15917 ALA 299 ENGINEERED MUTATION SEQADV 5D1U LEU A 777 UNP P15917 EXPRESSION TAG SEQADV 5D1U VAL A 778 UNP P15917 EXPRESSION TAG SEQADV 5D1U PRO A 779 UNP P15917 EXPRESSION TAG SEQADV 5D1U ARG A 780 UNP P15917 EXPRESSION TAG SEQRES 1 A 519 SER ASN ALA LEU SER ARG TYR GLU LYS TRP GLU LYS ILE SEQRES 2 A 519 LYS GLN HIS TYR GLN HIS TRP SER ASP SER LEU SER GLU SEQRES 3 A 519 GLU GLY ARG GLY LEU LEU LYS LYS LEU GLN ILE PRO ILE SEQRES 4 A 519 GLU PRO LYS LYS ASP ASP ILE ILE HIS SER LEU SER GLN SEQRES 5 A 519 GLU GLU LYS GLU LEU LEU LYS ARG ILE GLN ILE ASP SER SEQRES 6 A 519 SER ASP PHE LEU SER THR GLU GLU LYS GLU PHE LEU LYS SEQRES 7 A 519 LYS LEU GLN ILE ASP ILE ARG ASP SER LEU SER GLU GLU SEQRES 8 A 519 GLU LYS GLU LEU LEU ASN ARG ILE GLN VAL ASP SER SER SEQRES 9 A 519 ASN PRO LEU SER GLU LYS GLU LYS GLU PHE LEU LYS LYS SEQRES 10 A 519 LEU LYS LEU ASP ILE GLN PRO TYR ASP ILE ASN GLN ARG SEQRES 11 A 519 LEU GLN ASP THR GLY GLY LEU ILE ASP SER PRO SER ILE SEQRES 12 A 519 ASN LEU ASP VAL ARG LYS GLN TYR LYS ARG ASP ILE GLN SEQRES 13 A 519 ASN ILE ASP ALA LEU LEU HIS GLN SER ILE GLY SER THR SEQRES 14 A 519 LEU TYR ASN LYS ILE TYR LEU TYR GLU ASN MET ASN ILE SEQRES 15 A 519 ASN ASN LEU THR ALA THR LEU GLY ALA ASP LEU VAL ASP SEQRES 16 A 519 SER THR ASP ASN THR LYS ILE ASN ARG GLY ILE PHE ASN SEQRES 17 A 519 GLU PHE LYS LYS ASN PHE LYS TYR SER ILE SER SER ASN SEQRES 18 A 519 TYR MET ILE VAL ASP ILE ASN GLU ARG PRO ALA LEU ASP SEQRES 19 A 519 ASN GLU ARG LEU LYS TRP ARG ILE GLN LEU SER PRO ASP SEQRES 20 A 519 THR ARG ALA GLY TYR LEU GLU ASN GLY LYS LEU ILE LEU SEQRES 21 A 519 GLN ARG ASN ILE GLY LEU GLU ILE LYS ASP VAL GLN ILE SEQRES 22 A 519 ILE LYS GLN SER GLU LYS GLU TYR ILE ARG ILE ASP ALA SEQRES 23 A 519 LYS VAL VAL PRO LYS SER LYS ILE ASP THR LYS ILE GLN SEQRES 24 A 519 GLU ALA GLN LEU ASN ILE ASN GLN GLU TRP ASN LYS ALA SEQRES 25 A 519 LEU GLY LEU PRO LYS TYR THR LYS LEU ILE THR PHE ASN SEQRES 26 A 519 VAL HIS ASN ARG TYR ALA SER ASN ILE VAL GLU SER ALA SEQRES 27 A 519 TYR LEU ILE LEU ASN GLU TRP LYS ASN ASN ILE GLN SER SEQRES 28 A 519 ASP LEU ILE LYS LYS VAL THR ASN TYR LEU VAL ASP GLY SEQRES 29 A 519 ASN GLY ARG PHE VAL PHE THR ASP ILE THR LEU PRO ASN SEQRES 30 A 519 ILE ALA GLU GLN TYR THR HIS GLN ASP GLU ILE TYR GLU SEQRES 31 A 519 GLN VAL HIS SER LYS GLY LEU TYR VAL PRO GLU SER ARG SEQRES 32 A 519 SER ILE LEU LEU HIS GLY PRO SER LYS GLY VAL GLU LEU SEQRES 33 A 519 ARG ASN ASP SER GLU GLY PHE ILE HIS GLU PHE GLY HIS SEQRES 34 A 519 ALA VAL ASP ASP TYR ALA GLY TYR LEU LEU ASP LYS ASN SEQRES 35 A 519 GLN SER ASP LEU VAL THR ASN SER LYS LYS PHE ILE ASP SEQRES 36 A 519 ILE PHE LYS GLU GLU GLY SER ASN LEU THR SER TYR GLY SEQRES 37 A 519 ARG THR ASN GLU ALA GLU PHE PHE ALA GLU ALA PHE ARG SEQRES 38 A 519 LEU MET HIS SER THR ASP HIS ALA GLU ARG LEU LYS VAL SEQRES 39 A 519 GLN LYS ASN ALA PRO LYS THR PHE GLN PHE ILE ASN ASP SEQRES 40 A 519 GLN ILE LYS PHE ILE ILE ASN SER LEU VAL PRO ARG HET 56P A 801 21 HET ZN A 802 1 HETNAM 56P N~2~-(6-AMINOHEXYL)-N~2~-[(4-FLUORO-3-METHYLPHENYL) HETNAM 2 56P SULFONYL]-N-HYDROXY-D-ALANINAMIDE HETNAM ZN ZINC ION FORMUL 2 56P C16 H26 F N3 O4 S FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *17(H2 O) HELIX 1 AA1 TYR A 268 TYR A 278 1 11 HELIX 2 AA2 TYR A 278 SER A 284 1 7 HELIX 3 AA3 SER A 286 ILE A 298 1 13 HELIX 4 AA4 LYS A 303 HIS A 309 1 7 HELIX 5 AA5 SER A 312 ARG A 321 1 10 HELIX 6 AA6 SER A 331 ILE A 343 1 13 HELIX 7 AA7 SER A 369 ASP A 382 1 14 HELIX 8 AA8 ASP A 387 GLY A 396 1 10 HELIX 9 AA9 ASN A 405 LEU A 423 1 19 HELIX 10 AB1 ASN A 442 LEU A 446 5 5 HELIX 11 AB2 THR A 447 ALA A 452 1 6 HELIX 12 AB3 ASN A 464 LYS A 472 1 9 HELIX 13 AB4 PRO A 551 GLY A 575 1 25 HELIX 14 AB5 TYR A 591 ASN A 609 1 19 HELIX 15 AB6 GLN A 611 GLY A 625 1 15 HELIX 16 AB7 THR A 635 ASN A 638 5 4 HELIX 17 AB8 ILE A 639 THR A 644 1 6 HELIX 18 AB9 GLU A 648 GLN A 652 5 5 HELIX 19 AC1 PRO A 661 SER A 663 5 3 HELIX 20 AC2 ASN A 679 ASP A 701 1 23 HELIX 21 AC3 LEU A 707 ASN A 710 5 4 HELIX 22 AC4 SER A 711 GLY A 722 1 12 HELIX 23 AC5 THR A 726 THR A 731 5 6 HELIX 24 AC6 ASN A 732 MET A 744 1 13 HELIX 25 AC7 ASP A 748 ALA A 759 1 12 HELIX 26 AC8 ALA A 759 ASN A 775 1 17 SHEET 1 AA1 5 LEU A 437 MET A 441 0 SHEET 2 AA1 5 LEU A 499 GLN A 504 -1 O ILE A 503 N LEU A 437 SHEET 3 AA1 5 GLU A 541 VAL A 550 1 O ILE A 543 N LYS A 500 SHEET 4 AA1 5 ILE A 525 LYS A 536 -1 N LYS A 530 O ASP A 546 SHEET 5 AA1 5 TYR A 477 SER A 480 -1 N SER A 478 O LEU A 527 SHEET 1 AA2 3 ILE A 485 ASP A 487 0 SHEET 2 AA2 3 LYS A 518 LEU A 521 -1 O LEU A 519 N VAL A 486 SHEET 3 AA2 3 ALA A 511 LEU A 514 -1 N GLY A 512 O ILE A 520 SHEET 1 AA3 4 ILE A 583 ASN A 586 0 SHEET 2 AA3 4 ARG A 628 THR A 632 1 O PHE A 629 N THR A 584 SHEET 3 AA3 4 SER A 665 HIS A 669 1 O ILE A 666 N VAL A 630 SHEET 4 AA3 4 GLY A 657 VAL A 660 -1 N LEU A 658 O LEU A 667 LINK NE2 HIS A 686 ZN ZN A 802 1555 1555 2.17 LINK NE2 HIS A 690 ZN ZN A 802 1555 1555 2.08 LINK OE1 GLU A 735 ZN ZN A 802 1555 1555 2.52 LINK O5 56P A 801 ZN ZN A 802 1555 1555 1.97 LINK O3 56P A 801 ZN ZN A 802 1555 1555 2.49 SITE 1 AC1 12 SER A 655 LYS A 656 GLY A 657 VAL A 675 SITE 2 AC1 12 LEU A 677 HIS A 686 GLU A 687 HIS A 690 SITE 3 AC1 12 TYR A 728 GLU A 735 GLU A 739 ZN A 802 SITE 1 AC2 4 HIS A 686 HIS A 690 GLU A 735 56P A 801 CRYST1 57.928 77.293 138.488 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007221 0.00000