HEADER SUGAR BINDING PROTEIN 05-AUG-15 5D2A TITLE BIFUNCTIONAL DENDRIMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN PA-IIL,PHOTOPEXIN A,PSEUDOMONAS COMPND 5 AERUGINOSA GENOME ASSEMBLY PAE221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ZDC-ALA-PRO-ALA-LYS-PHE-CYS-ALA-PRO-ALA-PHB-GAL; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ZDC-ALA-PRO-ALA-LYS-PHE-CYS-ALA-PRO-ALA-PHB-GAL; COMPND 13 CHAIN: D, E; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, ERS445055_01627, PA8380_17510, PAE221_03716, SOURCE 5 PAMH19_1713, YQ19_10010; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS LECTINB, PSEUDOMONAS, DENDRIMER, BIOFILM, BIFUNCTIONAL, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MICHAUD,R.VISINI,A.STOCKER,T.DARBRE,J.L.REYMOND REVDAT 6 20-NOV-24 5D2A 1 REMARK REVDAT 5 10-JAN-24 5D2A 1 HETSYN REVDAT 4 29-JUL-20 5D2A 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 08-MAY-19 5D2A 1 REMARK LINK REVDAT 2 11-JUL-18 5D2A 1 JRNL REVDAT 1 10-FEB-16 5D2A 0 JRNL AUTH G.MICHAUD,R.VISINI,M.BERGMANN,G.SALERNO,R.BOSCO,E.GILLON, JRNL AUTH 2 B.RICHICHI,C.NATIVI,A.IMBERTY,A.STOCKER,T.DARBRE,J.L.REYMOND JRNL TITL OVERCOMING ANTIBIOTIC RESISTANCE INPSEUDOMONAS JRNL TITL 2 AERUGINOSABIOFILMS USING GLYCOPEPTIDE DENDRIMERS. JRNL REF CHEM SCI V. 7 166 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 29896342 JRNL DOI 10.1039/C5SC03635F REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5177 - 5.1418 1.00 1490 159 0.1765 0.2150 REMARK 3 2 5.1418 - 4.0819 1.00 1382 149 0.1422 0.1615 REMARK 3 3 4.0819 - 3.5661 1.00 1348 145 0.1706 0.2106 REMARK 3 4 3.5661 - 3.2401 1.00 1347 144 0.1843 0.2356 REMARK 3 5 3.2401 - 3.0079 1.00 1327 142 0.2259 0.2972 REMARK 3 6 3.0079 - 2.8306 1.00 1326 141 0.2259 0.2795 REMARK 3 7 2.8306 - 2.6889 1.00 1321 142 0.2298 0.2687 REMARK 3 8 2.6889 - 2.5718 1.00 1322 142 0.2324 0.3157 REMARK 3 9 2.5718 - 2.4728 1.00 1309 140 0.2505 0.3389 REMARK 3 10 2.4728 - 2.3875 1.00 1309 140 0.2614 0.2990 REMARK 3 11 2.3875 - 2.3129 0.99 1301 141 0.2754 0.3159 REMARK 3 12 2.3129 - 2.2467 1.00 1297 140 0.2938 0.3538 REMARK 3 13 2.2467 - 2.1876 1.00 1297 138 0.3228 0.3501 REMARK 3 14 2.1876 - 2.1342 0.94 1236 132 0.3581 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1784 REMARK 3 ANGLE : 1.320 2453 REMARK 3 CHIRALITY : 0.051 313 REMARK 3 PLANARITY : 0.005 321 REMARK 3 DIHEDRAL : 14.594 566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 47.506 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.28 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 14.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM CHLORIDE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.54600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.54600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.54600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.54600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 55.54600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.54600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 5 C ALA E 4 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA C 1 C PRO C 2 N 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA D 2 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 70.83 -152.88 REMARK 500 SER A 22 149.27 -170.84 REMARK 500 SER A 44 146.50 -170.62 REMARK 500 THR A 84 44.24 31.36 REMARK 500 GLU A 86 -50.97 -141.00 REMARK 500 THR B 84 41.51 31.74 REMARK 500 GLU B 86 -46.78 -144.97 REMARK 500 PRO D 3 177.84 -58.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 145.9 REMARK 620 3 ASP A 101 OD2 153.5 46.4 REMARK 620 4 ASN A 103 OD1 87.9 72.3 74.8 REMARK 620 5 ASP A 104 OD1 82.6 69.4 115.8 87.7 REMARK 620 6 GLY B 114 O 78.0 125.3 80.4 83.8 159.0 REMARK 620 7 ZDC E 101 O3 131.5 60.2 73.9 132.5 75.1 124.2 REMARK 620 8 ZDC E 101 O2 78.5 128.0 110.3 157.0 108.6 75.3 69.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 54.0 REMARK 620 3 ASP A 99 OD1 85.7 77.8 REMARK 620 4 ASP A 101 OD1 79.5 130.6 84.0 REMARK 620 5 ASP A 104 OD1 113.3 135.7 146.5 73.5 REMARK 620 6 ASP A 104 OD2 83.1 84.7 162.5 107.1 51.0 REMARK 620 7 ZDC E 101 O3 145.0 152.0 83.3 66.4 65.2 113.4 REMARK 620 8 ZDC E 101 O4 147.4 95.4 99.7 132.9 79.3 82.9 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 73.0 REMARK 620 3 ASP B 101 OD1 117.8 146.0 REMARK 620 4 ASP B 101 OD2 76.3 145.0 45.0 REMARK 620 5 ASN B 103 OD1 74.5 81.3 72.1 74.7 REMARK 620 6 ASP B 104 OD1 157.6 89.8 69.5 114.5 89.1 REMARK 620 7 ZDC D 101 O3 122.6 138.5 65.8 73.4 137.8 79.8 REMARK 620 8 ZDC D 101 O2 86.5 77.3 132.5 117.3 154.8 103.9 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 54.9 REMARK 620 3 ASP B 99 OD1 90.2 84.3 REMARK 620 4 ASP B 101 OD1 82.2 136.9 92.4 REMARK 620 5 ASP B 104 OD1 117.7 122.3 148.8 78.9 REMARK 620 6 ASP B 104 OD2 83.0 71.9 154.8 110.5 51.2 REMARK 620 7 ZDC D 101 O4 136.1 81.3 87.4 141.7 81.7 81.0 REMARK 620 8 ZDC D 101 O3 152.2 139.7 71.9 77.6 76.9 122.0 65.9 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 5D2A A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5D2A A A0A069Q9V4 2 115 DBREF1 5D2A B 1 114 UNP A0A069Q9V4_PSEAI DBREF2 5D2A B A0A069Q9V4 2 115 DBREF 5D2A C 1 7 PDB 5D2A 5D2A 1 7 DBREF 5D2A D 2 4 PDB 5D2A 5D2A 2 4 DBREF 5D2A E 2 4 PDB 5D2A 5D2A 2 4 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 6 ALA PRO ALA LYS PHE CYS SEQRES 1 D 3 ALA PRO ALA SEQRES 1 E 3 ALA PRO ALA HET CA A 201 1 HET CA A 202 1 HET CA B 201 1 HET CA B 202 1 HET PHB C 101 9 HET GAL C 102 11 HET ZDC D 101 13 HET ZDC E 101 13 HETNAM CA CALCIUM ION HETNAM PHB P-HYDROXYBENZOIC ACID HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 6 CA 4(CA 2+) FORMUL 10 PHB C7 H6 O3 FORMUL 11 GAL C6 H12 O6 FORMUL 12 ZDC 2(C8 H14 O6) FORMUL 14 HOH *79(H2 O) SHEET 1 AA1 4 VAL A 5 THR A 7 0 SHEET 2 AA1 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA1 4 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA1 4 GLU A 35 ASN A 56 -1 O GLY A 42 N GLN A 26 SHEET 1 AA2 6 VAL A 5 THR A 7 0 SHEET 2 AA2 6 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA2 6 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA2 6 ALA A 105 TRP A 111 -1 O VAL A 106 N PHE A 19 SHEET 5 AA2 6 LEU A 87 GLU A 95 -1 N ASN A 88 O TRP A 111 SHEET 6 AA2 6 ASP A 75 LEU A 83 -1 N ALA A 79 O LEU A 91 SHEET 1 AA3 4 VAL B 5 THR B 7 0 SHEET 2 AA3 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 AA3 4 ARG B 13 VAL B 32 -1 N LEU B 31 O GLN B 64 SHEET 4 AA3 4 ARG B 72 PRO B 73 0 SHEET 1 AA4 6 GLU B 35 ASN B 56 0 SHEET 2 AA4 6 ARG B 13 VAL B 32 -1 N SER B 22 O SER B 44 SHEET 3 AA4 6 LYS B 62 VAL B 69 -1 O GLN B 64 N LEU B 31 SHEET 4 AA4 6 ALA B 105 TRP B 111 0 SHEET 5 AA4 6 LEU B 87 GLU B 95 -1 N ALA B 90 O ILE B 109 SHEET 6 AA4 6 ASP B 75 LEU B 83 -1 N ALA B 79 O LEU B 91 SSBOND 1 CYS C 7 CYS C 7 1555 11455 2.15 LINK N ALA C 1 C1' PHB C 101 1555 1555 1.46 LINK O4 PHB C 101 C1 GAL C 102 1555 1555 1.42 LINK N ALA D 2 C7 ZDC D 101 1555 1555 1.46 LINK N ALA E 2 C7 ZDC E 101 1555 1555 1.47 LINK O ASN A 21 CA CA A 202 1555 1555 2.38 LINK OE1 GLU A 95 CA CA A 201 1555 1555 2.49 LINK OE2 GLU A 95 CA CA A 201 1555 1555 2.35 LINK OD1 ASP A 99 CA CA A 201 1555 1555 2.48 LINK OD1 ASP A 101 CA CA A 201 1555 1555 2.45 LINK OD1 ASP A 101 CA CA A 202 1555 1555 3.01 LINK OD2 ASP A 101 CA CA A 202 1555 1555 2.45 LINK OD1 ASN A 103 CA CA A 202 1555 1555 2.29 LINK OD1 ASP A 104 CA CA A 201 1555 1555 2.70 LINK OD2 ASP A 104 CA CA A 201 1555 1555 2.42 LINK OD1 ASP A 104 CA CA A 202 1555 1555 2.33 LINK O GLY A 114 CA CA B 202 1555 1555 2.55 LINK CA CA A 201 O3 ZDC E 101 1555 1555 2.54 LINK CA CA A 201 O4 ZDC E 101 1555 1555 2.51 LINK CA CA A 202 O GLY B 114 1555 1555 2.43 LINK CA CA A 202 O3 ZDC E 101 1555 1555 2.30 LINK CA CA A 202 O2 ZDC E 101 1555 1555 2.60 LINK O ASN B 21 CA CA B 202 1555 1555 2.37 LINK OE1 GLU B 95 CA CA B 201 1555 1555 2.47 LINK OE2 GLU B 95 CA CA B 201 1555 1555 2.28 LINK OD1 ASP B 99 CA CA B 201 1555 1555 2.40 LINK OD1 ASP B 101 CA CA B 201 1555 1555 2.35 LINK OD1 ASP B 101 CA CA B 202 1555 1555 3.03 LINK OD2 ASP B 101 CA CA B 202 1555 1555 2.53 LINK OD1 ASN B 103 CA CA B 202 1555 1555 2.57 LINK OD1 ASP B 104 CA CA B 201 1555 1555 2.59 LINK OD2 ASP B 104 CA CA B 201 1555 1555 2.51 LINK OD1 ASP B 104 CA CA B 202 1555 1555 2.42 LINK CA CA B 201 O4 ZDC D 101 1555 1555 2.54 LINK CA CA B 201 O3 ZDC D 101 1555 1555 2.50 LINK CA CA B 202 O3 ZDC D 101 1555 1555 2.51 LINK CA CA B 202 O2 ZDC D 101 1555 1555 2.45 CISPEP 1 TRP A 111 PRO A 112 0 0.93 CISPEP 2 TRP B 111 PRO B 112 0 -3.08 CRYST1 105.107 105.107 111.092 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009514 0.005493 0.000000 0.00000 SCALE2 0.000000 0.010986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009002 0.00000