HEADER OXIDOREDUCTASE 05-AUG-15 5D2E TITLE CRYSTAL STRUCTURE OF AN N-TERMINAL KETOREDUCTASE FROM MACROLACTIN TITLE 2 ASSEMBLY LINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLNE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-522; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS SUBSP. PLANTARUM SOURCE 3 (STRAIN DSM 23117 / BGSC 10A6 / FZB42); SOURCE 4 ORGANISM_TAXID: 326423; SOURCE 5 STRAIN: DSM 23117 / BGSC 10A6 / FZB42; SOURCE 6 GENE: MLNE, RBAM_014370; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS KETOREDUCTASE, B-TYPE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.KEATINGE-CLAY,J.ZENG REVDAT 2 27-SEP-23 5D2E 1 REMARK REVDAT 1 26-AUG-15 5D2E 0 JRNL AUTH J.ZENG,A.T.KEATINGE-CLAY JRNL TITL THE CRYSTAL STRUCTURE OF AN N-TERMINAL KETOREDUCTASE FROM JRNL TITL 2 MACROLACTIN POLYKETIDE SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 68897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.444 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4005 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3803 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5393 ; 1.855 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8780 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.172 ;24.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 713 ;15.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4448 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 922 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 3.074 ; 3.593 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1935 ; 3.074 ; 3.591 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2413 ; 4.116 ; 5.359 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5D2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4J1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM MALONATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.31350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.46650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.65500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.31350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.46650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.31350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.46650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.31350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.46650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 236 REMARK 465 CYS A 237 REMARK 465 LYS A 238 REMARK 465 THR A 239 REMARK 465 ASP A 240 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 GLY A 263 REMARK 465 GLU A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ASN A 456 REMARK 465 MET A 457 REMARK 465 THR A 458 REMARK 465 VAL A 459 REMARK 465 GLY A 460 REMARK 465 PRO A 461 REMARK 465 GLY A 462 REMARK 465 GLU A 463 REMARK 465 LEU A 464 REMARK 465 GLN A 465 REMARK 465 THR A 511 REMARK 465 ASP A 512 REMARK 465 HIS A 513 REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 ILE A 516 REMARK 465 GLU A 517 REMARK 465 THR A 518 REMARK 465 VAL A 519 REMARK 465 PRO A 520 REMARK 465 GLU A 521 REMARK 465 ASN A 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS A 241 O HOH A 701 1.61 REMARK 500 CB THR A 197 O HOH A 702 1.71 REMARK 500 CA THR A 197 O HOH A 702 1.93 REMARK 500 OG1 THR A 197 O HOH A 702 1.99 REMARK 500 ND1 HIS A 127 O HOH A 703 2.09 REMARK 500 CG2 THR A 197 O HOH A 702 2.13 REMARK 500 CA CYS A 241 O HOH A 701 2.15 REMARK 500 CG GLU A 183 O HOH A 978 2.19 REMARK 500 OE1 GLU A 218 O HOH A 704 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 67 CB ASP A 67 CG -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 18 11.17 80.01 REMARK 500 GLU A 81 65.64 -106.81 REMARK 500 ARG A 97 150.86 76.51 REMARK 500 ASN A 139 47.89 -87.83 REMARK 500 SER A 151 -90.37 -129.07 REMARK 500 GLU A 218 69.70 -155.36 REMARK 500 ALA A 367 144.21 -170.08 REMARK 500 VAL A 385 -70.88 -90.97 REMARK 500 ALA A 454 148.64 179.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 603 DBREF 5D2E A 1 522 UNP A7Z474 A7Z474_BACA2 1 522 SEQRES 1 A 522 MET ASN GLU LYS THR MET GLN ILE GLU GLN ILE VAL LYS SEQRES 2 A 522 LYS VAL LYS GLU CYS SER LEU THR PRO GLU GLU GLY LEU SEQRES 3 A 522 GLU LEU ILE LYS SER LEU GLY LYS THR HIS LEU TYR GLU SEQRES 4 A 522 MET VAL TRP ASP ARG HIS GLU PHE LYS GLY SER LYS LYS SEQRES 5 A 522 PHE PRO HIS THR LYS GLU PRO ILE LEU PHE PHE CYS GLU SEQRES 6 A 522 ASP ASP SER MET TYR THR VAL MET LYS ARG GLN LEU GLU SEQRES 7 A 522 GLY TYR GLU ALA PRO PHE ILE TYR VAL THR SER GLY GLU SEQRES 8 A 522 ARG PHE GLU ASP CYS ARG ASN GLY ARG PHE THR MET ASN SEQRES 9 A 522 PHE THR LYS GLY GLU ASP TYR ASP ALA LEU CYS GLY VAL SEQRES 10 A 522 LEU ARG SER GLN ASN ILE ARG PRO ARG HIS ILE ILE HIS SEQRES 11 A 522 PHE LEU ALA ALA GLY LEU PHE LYS ASN THR GLU ASP ALA SEQRES 12 A 522 MET ARG LYS GLN LEU ASN LYS SER LEU TYR SER LEU PHE SEQRES 13 A 522 GLN MET PHE GLN ALA PHE MET ALA ASN LYS LEU CYS PRO SEQRES 14 A 522 LYS ALA GLU ILE LEU TYR LEU TYR GLU ASN ALA GLU GLY SEQRES 15 A 522 GLU VAL GLN PRO ILE TYR ASN ALA VAL GLU SER PHE LEU SEQRES 16 A 522 LYS THR VAL GLN ALA GLU ASN PRO ASN PHE THR CYS LYS SEQRES 17 A 522 ALA ALA GLU LEU LYS SER MET PHE ASP GLU PRO PHE THR SEQRES 18 A 522 LYS GLN HIS ILE ALA ASP VAL ILE SER PHE GLU TRP ASN SEQRES 19 A 522 ASN GLN CYS LYS THR ASP CYS PHE THR CYS TYR GLU PRO SEQRES 20 A 522 ARG HIS TYR TYR LYS ARG GLN LEU GLN ARG VAL LYS LYS SEQRES 21 A 522 GLU ASP GLY GLU LYS HIS SER PHE SER VAL LYS LYS ASN SEQRES 22 A 522 GLY VAL TYR LEU ILE THR GLY GLY ALA GLY GLY LEU GLY SEQRES 23 A 522 TYR LEU PHE ALA GLU TYR LEU ALA LYS GLN ALA GLU VAL SEQRES 24 A 522 LYS LEU ILE LEU THR GLY ARG SER PRO ALA SER ARG GLU SEQRES 25 A 522 THR ALA GLN LYS LEU SER ALA LEU GLU ASN LEU GLY ALA SEQRES 26 A 522 GLU ALA LEU TYR VAL PRO ALA ASP ILE SER LYS GLU LYS SEQRES 27 A 522 GLU THR ASP ALA LEU ILE LYS TYR ILE LYS GLN THR PHE SEQRES 28 A 522 GLY GLU LEU ASN GLY ILE LEU HIS SER ALA GLY LEU VAL SEQRES 29 A 522 LYS ASP ALA PHE ILE ILE LYS LYS THR LYS GLU SER ILE SEQRES 30 A 522 GLU GLU VAL ILE ALA PRO LYS VAL PHE GLY THR VAL TRP SEQRES 31 A 522 LEU ASP LYS ALA ALA GLU GLU GLU PRO LEU ASP PHE PHE SEQRES 32 A 522 VAL MET PHE SER SER LEU SER ALA VAL LEU PRO ASN ALA SEQRES 33 A 522 GLY GLN SER ASP TYR ALA PHE ALA ASN GLY CYS MET ASP SEQRES 34 A 522 GLY PHE THR GLN TYR ARG SER MET LYS GLY ARG PRO GLY SEQRES 35 A 522 LYS THR LEU SER ILE ASN TRP PRO LEU TRP ASP ALA GLY SEQRES 36 A 522 ASN MET THR VAL GLY PRO GLY GLU LEU GLN ALA LEU ARG SEQRES 37 A 522 HIS ALA GLY LEU GLU LEU LEU SER ALA GLN ALA GLY LEU SEQRES 38 A 522 ALA ALA PHE GLN ASP SER MET SER ARG SER ALA SER GLN SEQRES 39 A 522 LEU ALA VAL ILE SER GLY ASP LYS ASP ARG ILE SER GLU SEQRES 40 A 522 LEU LEU SER THR ASP HIS LYS LYS ILE GLU THR VAL PRO SEQRES 41 A 522 GLU ASN HET NAP A 601 48 HET GOL A 602 6 HET PG4 A 603 13 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 PG4 C8 H18 O5 FORMUL 5 HOH *372(H2 O) HELIX 1 AA1 THR A 5 GLU A 17 1 13 HELIX 2 AA2 THR A 21 SER A 31 1 11 HELIX 3 AA3 ASP A 66 SER A 68 5 3 HELIX 4 AA4 MET A 69 LEU A 77 1 9 HELIX 5 AA5 LYS A 107 GLN A 121 1 15 HELIX 6 AA6 THR A 140 SER A 151 1 12 HELIX 7 AA7 SER A 151 ASN A 165 1 15 HELIX 8 AA8 GLN A 185 ASN A 202 1 18 HELIX 9 AA9 THR A 221 ASN A 234 1 14 HELIX 10 AB1 GLY A 283 ALA A 297 1 15 HELIX 11 AB2 SER A 310 ASN A 322 1 13 HELIX 12 AB3 LYS A 336 GLY A 352 1 17 HELIX 13 AB4 THR A 373 ALA A 382 1 10 HELIX 14 AB5 VAL A 385 ALA A 395 1 11 HELIX 15 AB6 SER A 410 VAL A 412 5 3 HELIX 16 AB7 GLN A 418 LYS A 438 1 21 HELIX 17 AB8 LEU A 467 GLY A 471 1 5 HELIX 18 AB9 ALA A 477 SER A 489 1 13 HELIX 19 AC1 ASP A 501 SER A 510 1 10 SHEET 1 AA117 GLU A 94 ASP A 95 0 SHEET 2 AA117 ARG A 100 MET A 103 -1 O THR A 102 N GLU A 94 SHEET 3 AA117 PHE A 84 SER A 89 1 N THR A 88 O PHE A 101 SHEET 4 AA117 ILE A 60 CYS A 64 1 N ILE A 60 O ILE A 85 SHEET 5 AA117 HIS A 127 ALA A 133 1 O ILE A 129 N PHE A 63 SHEET 6 AA117 ALA A 171 ALA A 180 1 O LEU A 174 N HIS A 130 SHEET 7 AA117 PHE A 205 SER A 214 1 O THR A 206 N ILE A 173 SHEET 8 AA117 PHE A 242 TYR A 245 1 O TYR A 245 N LYS A 213 SHEET 9 AA117 HIS A 249 ARG A 257 -1 O TYR A 251 N CYS A 244 SHEET 10 AA117 THR A 35 GLU A 46 -1 N ASP A 43 O LYS A 252 SHEET 11 AA117 GLN A 494 SER A 499 -1 O ALA A 496 N TYR A 38 SHEET 12 AA117 LYS A 443 TRP A 449 1 N ASN A 448 O LEU A 495 SHEET 13 AA117 PHE A 402 SER A 408 1 N MET A 405 O LEU A 445 SHEET 14 AA117 GLY A 356 HIS A 359 1 N HIS A 359 O VAL A 404 SHEET 15 AA117 VAL A 275 THR A 279 1 N LEU A 277 O LEU A 358 SHEET 16 AA117 LYS A 300 THR A 304 1 O ILE A 302 N TYR A 276 SHEET 17 AA117 GLU A 326 TYR A 329 1 O GLU A 326 N LEU A 301 SHEET 1 AA2 2 TRP A 452 ASP A 453 0 SHEET 2 AA2 2 LEU A 475 SER A 476 1 O LEU A 475 N ASP A 453 SITE 1 AC1 29 GLY A 280 GLY A 283 GLY A 284 LEU A 285 SITE 2 AC1 29 GLY A 305 ARG A 306 SER A 307 ALA A 332 SITE 3 AC1 29 ASP A 333 ILE A 334 SER A 360 ALA A 361 SITE 4 AC1 29 GLY A 362 LYS A 384 SER A 407 TYR A 421 SITE 5 AC1 29 TRP A 449 PRO A 450 LEU A 451 TRP A 452 SITE 6 AC1 29 HOH A 732 HOH A 747 HOH A 749 HOH A 786 SITE 7 AC1 29 HOH A 867 HOH A 874 HOH A 886 HOH A 941 SITE 8 AC1 29 HOH A 975 SITE 1 AC2 10 ARG A 145 SER A 335 LYS A 336 ALA A 382 SITE 2 AC2 10 PHE A 386 TRP A 390 HOH A 804 HOH A 822 SITE 3 AC2 10 HOH A 823 HOH A 869 SITE 1 AC3 5 VAL A 330 GLU A 339 ALA A 342 TYR A 346 SITE 2 AC3 5 HOH A 899 CRYST1 92.627 110.933 139.310 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010796 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007178 0.00000