HEADER LYASE 05-AUG-15 5D2F TITLE 4-OXALOCROTONATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA G7 - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-OXALOCROTONATE DECARBOXYLASE NAHK; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.77; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: NAHK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-TEV KEYWDS NAPHTHALENE DEGRADATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.GUIMARAES,R.A.P.NAGEM REVDAT 5 27-SEP-23 5D2F 1 REMARK REVDAT 4 08-JAN-20 5D2F 1 REMARK REVDAT 3 17-APR-19 5D2F 1 JRNL REMARK REVDAT 2 25-MAY-16 5D2F 1 JRNL REVDAT 1 04-MAY-16 5D2F 0 JRNL AUTH S.L.GUIMARAES,J.B.COITINHO,D.M.COSTA,S.S.ARAUJO,C.P.WHITMAN, JRNL AUTH 2 R.A.NAGEM JRNL TITL CRYSTAL STRUCTURES OF APO AND LIGANDED 4-OXALOCROTONATE JRNL TITL 2 DECARBOXYLASE UNCOVER A STRUCTURAL BASIS FOR THE JRNL TITL 3 METAL-ASSISTED DECARBOXYLATION OF A VINYLOGOUS BETA-KETO JRNL TITL 4 ACID. JRNL REF BIOCHEMISTRY V. 55 2632 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27082660 JRNL DOI 10.1021/ACS.BIOCHEM.6B00050 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 25312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3577 - 3.6130 0.99 2921 164 0.1504 0.1782 REMARK 3 2 3.6130 - 2.8684 0.99 2765 143 0.1427 0.1857 REMARK 3 3 2.8684 - 2.5060 0.99 2704 155 0.1680 0.2275 REMARK 3 4 2.5060 - 2.2769 0.98 2710 132 0.1674 0.2472 REMARK 3 5 2.2769 - 2.1138 0.94 2580 132 0.2015 0.2152 REMARK 3 6 2.1138 - 1.9892 0.97 2615 154 0.1505 0.1808 REMARK 3 7 1.9892 - 1.8896 0.96 2582 148 0.2036 0.2564 REMARK 3 8 1.8896 - 1.8073 0.95 2599 138 0.2233 0.2715 REMARK 3 9 1.8073 - 1.7378 0.94 2534 136 0.2261 0.2917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2091 REMARK 3 ANGLE : 1.174 2818 REMARK 3 CHIRALITY : 0.077 324 REMARK 3 PLANARITY : 0.004 366 REMARK 3 DIHEDRAL : 12.573 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0975 21.6152 19.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0797 REMARK 3 T33: 0.0902 T12: -0.0149 REMARK 3 T13: -0.0101 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.7396 L22: 1.2025 REMARK 3 L33: 1.0156 L12: 0.0232 REMARK 3 L13: -0.2171 L23: -0.4835 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0203 S13: 0.0981 REMARK 3 S21: -0.0768 S22: 0.0088 S23: 0.0067 REMARK 3 S31: -0.1356 S32: 0.0724 S33: -0.0059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6882 12.2869 12.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0802 REMARK 3 T33: 0.0788 T12: -0.0017 REMARK 3 T13: 0.0073 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.7745 L22: 0.6165 REMARK 3 L33: 0.8526 L12: 0.4008 REMARK 3 L13: 0.5408 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0485 S13: 0.0251 REMARK 3 S21: -0.0326 S22: -0.0085 S23: -0.0005 REMARK 3 S31: -0.0429 S32: 0.0110 S33: 0.0385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7847 5.5921 14.6666 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.0813 REMARK 3 T33: 0.0956 T12: 0.0065 REMARK 3 T13: -0.0034 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4204 L22: 0.2229 REMARK 3 L33: 0.9972 L12: 0.1685 REMARK 3 L13: 0.1851 L23: -0.0719 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0307 S13: -0.0050 REMARK 3 S21: -0.0062 S22: -0.0037 S23: 0.0152 REMARK 3 S31: 0.0298 S32: -0.0742 S33: -0.0158 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2353 -3.8637 12.7449 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1867 REMARK 3 T33: 0.1361 T12: -0.0546 REMARK 3 T13: -0.0220 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.5851 L22: 0.5316 REMARK 3 L33: 0.8467 L12: -0.0009 REMARK 3 L13: 0.1133 L23: -0.4142 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: -0.0448 S13: -0.1548 REMARK 3 S21: -0.0584 S22: 0.0415 S23: 0.0153 REMARK 3 S31: 0.2334 S32: -0.3674 S33: -0.0049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6013 1.4354 13.3521 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1046 REMARK 3 T33: 0.1048 T12: -0.0100 REMARK 3 T13: -0.0168 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1173 L22: 0.1635 REMARK 3 L33: 0.7252 L12: -0.0561 REMARK 3 L13: 0.1107 L23: -0.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0283 S13: -0.0488 REMARK 3 S21: -0.0310 S22: 0.0180 S23: -0.0029 REMARK 3 S31: 0.1540 S32: -0.1100 S33: -0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.437 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.738 REMARK 200 RESOLUTION RANGE LOW (A) : 31.358 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2370 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2EB4 REMARK 200 REMARK 200 REMARK: PARALLELEPIPED-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.88150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.57050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.57050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.88150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.46950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 521 O HOH A 736 2.11 REMARK 500 O HOH A 445 O HOH A 543 2.15 REMARK 500 O HOH A 597 O HOH A 649 2.16 REMARK 500 O HOH A 630 O HOH A 649 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 497 O HOH A 507 3645 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 68 30.26 -92.59 REMARK 500 PRO A 81 -177.66 -68.07 REMARK 500 HIS A 105 70.83 -155.22 REMARK 500 ASP A 161 31.45 -90.47 REMARK 500 THR A 166 -41.38 -155.02 REMARK 500 LEU A 205 -2.86 69.77 REMARK 500 HIS A 207 116.08 -165.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 785 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 786 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 787 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 788 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D2G RELATED DB: PDB REMARK 900 RELATED ID: 5D2H RELATED DB: PDB REMARK 900 RELATED ID: 5D2I RELATED DB: PDB REMARK 900 RELATED ID: 5D2J RELATED DB: PDB REMARK 900 RELATED ID: 5D2K RELATED DB: PDB DBREF 5D2F A 1 264 UNP Q1XGK3 Q1XGK3_PSEPU 1 264 SEQADV 5D2F MET A -18 UNP Q1XGK3 INITIATING METHIONINE SEQADV 5D2F GLY A -17 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -16 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -15 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -14 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -13 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -12 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -11 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F GLU A -10 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F ASN A -9 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F LEU A -8 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F TYR A -7 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F PHE A -6 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F GLN A -5 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F GLY A -4 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F HIS A -3 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F MET A -2 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F ALA A -1 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F SER A 0 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2F PRO A 155 UNP Q1XGK3 LEU 155 ENGINEERED MUTATION SEQRES 1 A 283 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 283 GLN GLY HIS MET ALA SER MET ASN ARG THR LEU THR ARG SEQRES 3 A 283 GLU GLN VAL LEU ALA LEU ALA GLU HIS ILE GLU ASN ALA SEQRES 4 A 283 GLU LEU ASN VAL HIS ASP ILE GLY LYS VAL THR ASN ASP SEQRES 5 A 283 PHE PRO GLU MET THR PHE ALA ASP ALA TYR ASP VAL GLN SEQRES 6 A 283 TRP GLU ILE ARG ARG ARG LYS GLU ALA ARG GLY ASN LYS SEQRES 7 A 283 ILE VAL GLY LEU LYS MET GLY LEU THR SER TRP ALA LYS SEQRES 8 A 283 MET ALA GLN MET GLY VAL GLU THR PRO ILE TYR GLY PHE SEQRES 9 A 283 LEU ALA ASP TYR PHE SER VAL PRO ASP GLY GLY VAL VAL SEQRES 10 A 283 ASP CYS SER LYS LEU ILE HIS PRO LYS ILE GLU ALA GLU SEQRES 11 A 283 ILE SER VAL VAL THR LYS ALA PRO LEU HIS GLY PRO GLY SEQRES 12 A 283 CYS HIS LEU GLY ASP VAL ILE ALA ALA ILE ASP TYR VAL SEQRES 13 A 283 ILE PRO THR VAL GLU VAL ILE ASP SER ARG TYR GLU ASN SEQRES 14 A 283 PHE LYS PHE ASP PRO ILE SER VAL VAL ALA ASP ASN ALA SEQRES 15 A 283 SER SER THR ARG PHE ILE THR GLY GLY ARG MET ALA SER SEQRES 16 A 283 LEU GLU GLU VAL ASP LEU ARG THR LEU GLY VAL VAL MET SEQRES 17 A 283 GLU LYS ASN GLY GLU VAL VAL GLU LEU GLY ALA GLY ALA SEQRES 18 A 283 ALA VAL LEU GLY HIS PRO LEU SER SER VAL ALA MET LEU SEQRES 19 A 283 ALA ASN LEU LEU ALA GLU ARG GLY GLU HIS ILE PRO ALA SEQRES 20 A 283 GLY THR PHE ILE MET THR GLY GLY ILE THR ALA ALA VAL SEQRES 21 A 283 PRO VAL ALA PRO GLY ASP ASN ILE THR VAL ARG TYR GLN SEQRES 22 A 283 GLY LEU GLY SER VAL SER ALA ARG PHE ILE HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 8 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET CL A 313 1 HET CL A 314 1 HET ACT A 315 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 12(C2 H6 O2) FORMUL 14 CL 2(CL 1-) FORMUL 16 ACT C2 H3 O2 1- FORMUL 17 HOH *388(H2 O) HELIX 1 AA1 THR A 6 ASN A 23 1 18 HELIX 2 AA2 LYS A 29 ASP A 33 5 5 HELIX 3 AA3 THR A 38 ARG A 56 1 19 HELIX 4 AA4 SER A 69 GLY A 77 1 9 HELIX 5 AA5 SER A 101 LEU A 103 5 3 HELIX 6 AA6 HIS A 126 ALA A 132 1 7 HELIX 7 AA7 ASP A 154 ASP A 161 1 8 HELIX 8 AA8 SER A 176 VAL A 180 5 5 HELIX 9 AA9 ALA A 202 VAL A 204 5 3 HELIX 10 AB1 HIS A 207 GLU A 221 1 15 SHEET 1 AA1 7 ILE A 82 ALA A 87 0 SHEET 2 AA1 7 ILE A 60 GLY A 66 -1 N LYS A 64 O GLY A 84 SHEET 3 AA1 7 PHE A 231 MET A 233 1 O MET A 233 N LEU A 63 SHEET 4 AA1 7 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA1 7 ILE A 134 ILE A 144 -1 O ASP A 135 N VAL A 115 SHEET 6 AA1 7 SER A 165 THR A 170 -1 O ILE A 169 N VAL A 141 SHEET 7 AA1 7 SER A 91 PRO A 93 1 N VAL A 92 O PHE A 168 SHEET 1 AA2 5 ILE A 82 ALA A 87 0 SHEET 2 AA2 5 ILE A 60 GLY A 66 -1 N LYS A 64 O GLY A 84 SHEET 3 AA2 5 PHE A 231 MET A 233 1 O MET A 233 N LEU A 63 SHEET 4 AA2 5 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA2 5 VAL A 241 PRO A 242 -1 O VAL A 241 N ILE A 108 SHEET 1 AA3 5 GLY A 96 ASP A 99 0 SHEET 2 AA3 5 GLY A 257 ILE A 264 1 O ARG A 262 N VAL A 98 SHEET 3 AA3 5 ASN A 248 TYR A 253 -1 N VAL A 251 O VAL A 259 SHEET 4 AA3 5 GLY A 186 LYS A 191 -1 N GLU A 190 O THR A 250 SHEET 5 AA3 5 GLU A 194 ALA A 200 -1 O GLU A 197 N MET A 189 CISPEP 1 GLY A 122 PRO A 123 0 1.56 SITE 1 AC1 6 TYR A 43 TYR A 83 LEU A 218 GLU A 221 SITE 2 AC1 6 ARG A 222 HOH A 551 SITE 1 AC2 8 ASN A 2 ARG A 3 LEU A 127 HIS A 207 SITE 2 AC2 8 GLU A 221 ARG A 222 EDO A 304 HOH A 555 SITE 1 AC3 6 HIS A 105 LYS A 107 ILE A 144 SER A 146 SITE 2 AC3 6 HOH A 487 HOH A 510 SITE 1 AC4 7 ASN A 2 ARG A 3 ILE A 131 EDO A 302 SITE 2 AC4 7 HOH A 470 HOH A 567 HOH A 621 SITE 1 AC5 6 ALA A 118 PRO A 119 ALA A 132 ALA A 133 SITE 2 AC5 6 HOH A 450 HOH A 547 SITE 1 AC6 4 GLY A 172 GLY A 257 SER A 258 HOH A 424 SITE 1 AC7 6 ASN A 23 GLY A 95 GLY A 96 VAL A 97 SITE 2 AC7 6 ARG A 262 HOH A 401 SITE 1 AC8 5 VAL A 61 ASP A 88 SER A 91 HOH A 417 SITE 2 AC8 5 HOH A 634 SITE 1 AC9 1 HOH A 632 SITE 1 AD1 5 GLY A 66 LEU A 67 PHE A 153 ALA A 163 SITE 2 AD1 5 HOH A 537 SITE 1 AD2 5 ARG A 50 ILE A 60 GLY A 62 HOH A 426 SITE 2 AD2 5 HOH A 550 SITE 1 AD3 4 GLY A 236 ILE A 237 THR A 238 ALA A 239 SITE 1 AD4 4 ASP A 99 ARG A 167 HOH A 415 HOH A 527 SITE 1 AD5 1 PHE A 151 SITE 1 AD6 2 ARG A 56 HOH A 522 CRYST1 43.763 44.939 125.141 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007991 0.00000