HEADER LYASE 05-AUG-15 5D2K TITLE 4-OXALOCROTONATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA G7 - COMPLEXED TITLE 2 WITH MAGNESIUM AND 2-OXOADIPATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-OXALOCROTONATE DECARBOXYLASE NAHK; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.77; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: NAHK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-TEV KEYWDS NAPHTHALENE DEGRADATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.GUIMARAES,R.A.P.NAGEM REVDAT 5 27-SEP-23 5D2K 1 LINK REVDAT 4 08-JAN-20 5D2K 1 REMARK REVDAT 3 17-APR-19 5D2K 1 JRNL REMARK REVDAT 2 25-MAY-16 5D2K 1 JRNL REVDAT 1 04-MAY-16 5D2K 0 JRNL AUTH S.L.GUIMARAES,J.B.COITINHO,D.M.COSTA,S.S.ARAUJO,C.P.WHITMAN, JRNL AUTH 2 R.A.NAGEM JRNL TITL CRYSTAL STRUCTURES OF APO AND LIGANDED 4-OXALOCROTONATE JRNL TITL 2 DECARBOXYLASE UNCOVER A STRUCTURAL BASIS FOR THE JRNL TITL 3 METAL-ASSISTED DECARBOXYLATION OF A VINYLOGOUS BETA-KETO JRNL TITL 4 ACID. JRNL REF BIOCHEMISTRY V. 55 2632 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27082660 JRNL DOI 10.1021/ACS.BIOCHEM.6B00050 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7937 - 4.5903 0.97 2695 146 0.1565 0.1627 REMARK 3 2 4.5903 - 3.6442 1.00 2715 132 0.1297 0.1219 REMARK 3 3 3.6442 - 3.1837 1.00 2702 120 0.1432 0.1615 REMARK 3 4 3.1837 - 2.8927 1.00 2701 143 0.1598 0.1899 REMARK 3 5 2.8927 - 2.6854 1.00 2683 129 0.1605 0.1949 REMARK 3 6 2.6854 - 2.5271 1.00 2683 110 0.1594 0.1786 REMARK 3 7 2.5271 - 2.4006 1.00 2659 140 0.1515 0.1773 REMARK 3 8 2.4006 - 2.2961 1.00 2665 165 0.1488 0.2011 REMARK 3 9 2.2961 - 2.2077 1.00 2613 131 0.1502 0.1669 REMARK 3 10 2.2077 - 2.1315 1.00 2704 128 0.1451 0.1799 REMARK 3 11 2.1315 - 2.0649 1.00 2647 144 0.1512 0.1740 REMARK 3 12 2.0649 - 2.0059 1.00 2634 145 0.1499 0.1774 REMARK 3 13 2.0059 - 1.9531 1.00 2641 144 0.1501 0.1806 REMARK 3 14 1.9531 - 1.9054 1.00 2661 140 0.1434 0.1750 REMARK 3 15 1.9054 - 1.8621 1.00 2628 137 0.1527 0.1770 REMARK 3 16 1.8621 - 1.8225 1.00 2653 146 0.1519 0.1928 REMARK 3 17 1.8225 - 1.7860 1.00 2604 150 0.1543 0.1816 REMARK 3 18 1.7860 - 1.7523 1.00 2659 146 0.1548 0.1923 REMARK 3 19 1.7523 - 1.7210 1.00 2633 138 0.1567 0.2096 REMARK 3 20 1.7210 - 1.6918 1.00 2664 153 0.1530 0.2213 REMARK 3 21 1.6918 - 1.6645 1.00 2628 131 0.1532 0.2211 REMARK 3 22 1.6645 - 1.6389 1.00 2614 159 0.1576 0.1810 REMARK 3 23 1.6389 - 1.6148 1.00 2646 143 0.1642 0.1968 REMARK 3 24 1.6148 - 1.5921 1.00 2616 128 0.1644 0.1904 REMARK 3 25 1.5921 - 1.5706 0.98 2629 123 0.1728 0.2291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4235 REMARK 3 ANGLE : 1.152 5740 REMARK 3 CHIRALITY : 0.047 662 REMARK 3 PLANARITY : 0.004 750 REMARK 3 DIHEDRAL : 12.935 1579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 - 10.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.461 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.571 REMARK 200 RESOLUTION RANGE LOW (A) : 40.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7040 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.972 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2EB4 REMARK 200 REMARK 200 REMARK: NEEDLE-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, PEG 4000, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.20550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 406 O HOH B 415 2.04 REMARK 500 O HOH B 410 O HOH B 522 2.13 REMARK 500 O HOH A 411 O HOH A 432 2.15 REMARK 500 O HOH B 411 O HOH B 472 2.15 REMARK 500 O1 OOG B 302 O1 EDO B 306 2.17 REMARK 500 O4 OOG B 302 O HOH B 401 2.17 REMARK 500 O HOH A 409 O HOH A 640 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 404 O HOH A 437 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 105 69.12 -157.14 REMARK 500 ASP A 145 80.44 -160.41 REMARK 500 THR A 166 -38.68 -157.18 REMARK 500 THR B 68 37.58 -94.74 REMARK 500 HIS B 105 67.06 -159.29 REMARK 500 ASP B 145 83.77 -160.66 REMARK 500 ASP B 161 30.83 -92.74 REMARK 500 THR B 166 -38.06 -154.29 REMARK 500 LEU B 205 -4.38 66.65 REMARK 500 HIS B 207 118.50 -164.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 738 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE1 REMARK 620 2 GLU A 111 OE2 88.6 REMARK 620 3 GLU A 142 OE1 92.8 97.8 REMARK 620 4 OOG A 302 O4 88.1 95.3 167.0 REMARK 620 5 OOG A 302 O5 89.8 172.5 89.7 77.3 REMARK 620 6 HOH A 441 O 173.7 87.5 92.6 87.4 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 109 OE1 REMARK 620 2 GLU B 111 OE2 91.7 REMARK 620 3 GLU B 142 OE1 92.9 100.8 REMARK 620 4 OOG B 302 O3 87.8 167.1 92.0 REMARK 620 5 OOG B 302 O3 84.4 93.3 165.7 73.9 REMARK 620 6 OOG B 302 O5 84.4 173.0 85.2 7.8 80.6 REMARK 620 7 HOH B 430 O 175.5 88.3 91.5 91.2 91.1 95.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OOG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D2F RELATED DB: PDB REMARK 900 5D2F CONTAINS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 5D2G RELATED DB: PDB REMARK 900 RELATED ID: 5D2H RELATED DB: PDB REMARK 900 RELATED ID: 5D2I RELATED DB: PDB REMARK 900 RELATED ID: 5D2J RELATED DB: PDB DBREF 5D2K A 1 264 UNP Q1XGK3 Q1XGK3_PSEPU 1 264 DBREF 5D2K B 1 264 UNP Q1XGK3 Q1XGK3_PSEPU 1 264 SEQADV 5D2K GLY A -4 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K HIS A -3 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K MET A -2 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K ALA A -1 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K SER A 0 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K PRO A 155 UNP Q1XGK3 LEU 155 ENGINEERED MUTATION SEQADV 5D2K GLY B -4 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K HIS B -3 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K MET B -2 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K ALA B -1 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K SER B 0 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2K PRO B 155 UNP Q1XGK3 LEU 155 ENGINEERED MUTATION SEQRES 1 A 269 GLY HIS MET ALA SER MET ASN ARG THR LEU THR ARG GLU SEQRES 2 A 269 GLN VAL LEU ALA LEU ALA GLU HIS ILE GLU ASN ALA GLU SEQRES 3 A 269 LEU ASN VAL HIS ASP ILE GLY LYS VAL THR ASN ASP PHE SEQRES 4 A 269 PRO GLU MET THR PHE ALA ASP ALA TYR ASP VAL GLN TRP SEQRES 5 A 269 GLU ILE ARG ARG ARG LYS GLU ALA ARG GLY ASN LYS ILE SEQRES 6 A 269 VAL GLY LEU LYS MET GLY LEU THR SER TRP ALA LYS MET SEQRES 7 A 269 ALA GLN MET GLY VAL GLU THR PRO ILE TYR GLY PHE LEU SEQRES 8 A 269 ALA ASP TYR PHE SER VAL PRO ASP GLY GLY VAL VAL ASP SEQRES 9 A 269 CYS SER LYS LEU ILE HIS PRO LYS ILE GLU ALA GLU ILE SEQRES 10 A 269 SER VAL VAL THR LYS ALA PRO LEU HIS GLY PRO GLY CYS SEQRES 11 A 269 HIS LEU GLY ASP VAL ILE ALA ALA ILE ASP TYR VAL ILE SEQRES 12 A 269 PRO THR VAL GLU VAL ILE ASP SER ARG TYR GLU ASN PHE SEQRES 13 A 269 LYS PHE ASP PRO ILE SER VAL VAL ALA ASP ASN ALA SER SEQRES 14 A 269 SER THR ARG PHE ILE THR GLY GLY ARG MET ALA SER LEU SEQRES 15 A 269 GLU GLU VAL ASP LEU ARG THR LEU GLY VAL VAL MET GLU SEQRES 16 A 269 LYS ASN GLY GLU VAL VAL GLU LEU GLY ALA GLY ALA ALA SEQRES 17 A 269 VAL LEU GLY HIS PRO LEU SER SER VAL ALA MET LEU ALA SEQRES 18 A 269 ASN LEU LEU ALA GLU ARG GLY GLU HIS ILE PRO ALA GLY SEQRES 19 A 269 THR PHE ILE MET THR GLY GLY ILE THR ALA ALA VAL PRO SEQRES 20 A 269 VAL ALA PRO GLY ASP ASN ILE THR VAL ARG TYR GLN GLY SEQRES 21 A 269 LEU GLY SER VAL SER ALA ARG PHE ILE SEQRES 1 B 269 GLY HIS MET ALA SER MET ASN ARG THR LEU THR ARG GLU SEQRES 2 B 269 GLN VAL LEU ALA LEU ALA GLU HIS ILE GLU ASN ALA GLU SEQRES 3 B 269 LEU ASN VAL HIS ASP ILE GLY LYS VAL THR ASN ASP PHE SEQRES 4 B 269 PRO GLU MET THR PHE ALA ASP ALA TYR ASP VAL GLN TRP SEQRES 5 B 269 GLU ILE ARG ARG ARG LYS GLU ALA ARG GLY ASN LYS ILE SEQRES 6 B 269 VAL GLY LEU LYS MET GLY LEU THR SER TRP ALA LYS MET SEQRES 7 B 269 ALA GLN MET GLY VAL GLU THR PRO ILE TYR GLY PHE LEU SEQRES 8 B 269 ALA ASP TYR PHE SER VAL PRO ASP GLY GLY VAL VAL ASP SEQRES 9 B 269 CYS SER LYS LEU ILE HIS PRO LYS ILE GLU ALA GLU ILE SEQRES 10 B 269 SER VAL VAL THR LYS ALA PRO LEU HIS GLY PRO GLY CYS SEQRES 11 B 269 HIS LEU GLY ASP VAL ILE ALA ALA ILE ASP TYR VAL ILE SEQRES 12 B 269 PRO THR VAL GLU VAL ILE ASP SER ARG TYR GLU ASN PHE SEQRES 13 B 269 LYS PHE ASP PRO ILE SER VAL VAL ALA ASP ASN ALA SER SEQRES 14 B 269 SER THR ARG PHE ILE THR GLY GLY ARG MET ALA SER LEU SEQRES 15 B 269 GLU GLU VAL ASP LEU ARG THR LEU GLY VAL VAL MET GLU SEQRES 16 B 269 LYS ASN GLY GLU VAL VAL GLU LEU GLY ALA GLY ALA ALA SEQRES 17 B 269 VAL LEU GLY HIS PRO LEU SER SER VAL ALA MET LEU ALA SEQRES 18 B 269 ASN LEU LEU ALA GLU ARG GLY GLU HIS ILE PRO ALA GLY SEQRES 19 B 269 THR PHE ILE MET THR GLY GLY ILE THR ALA ALA VAL PRO SEQRES 20 B 269 VAL ALA PRO GLY ASP ASN ILE THR VAL ARG TYR GLN GLY SEQRES 21 B 269 LEU GLY SER VAL SER ALA ARG PHE ILE HET MG A 301 1 HET OOG A 302 11 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 8 HET EDO A 309 4 HET MG B 301 1 HET OOG B 302 22 HET EDO B 303 8 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET EDO B 308 4 HET ACT B 309 4 HETNAM MG MAGNESIUM ION HETNAM OOG 2-OXOADIPIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 OOG 2(C6 H8 O5) FORMUL 5 EDO 13(C2 H6 O2) FORMUL 20 ACT C2 H3 O2 1- FORMUL 21 HOH *644(H2 O) HELIX 1 AA1 THR A 6 ASN A 23 1 18 HELIX 2 AA2 LYS A 29 PHE A 34 1 6 HELIX 3 AA3 THR A 38 ARG A 56 1 19 HELIX 4 AA4 SER A 69 GLY A 77 1 9 HELIX 5 AA5 SER A 101 LEU A 103 5 3 HELIX 6 AA6 HIS A 126 ILE A 131 1 6 HELIX 7 AA7 TYR A 148 LYS A 152 5 5 HELIX 8 AA8 ASP A 154 ASP A 161 1 8 HELIX 9 AA9 SER A 176 VAL A 180 5 5 HELIX 10 AB1 ALA A 202 VAL A 204 5 3 HELIX 11 AB2 HIS A 207 GLU A 221 1 15 HELIX 12 AB3 THR B 6 ASN B 23 1 18 HELIX 13 AB4 LYS B 29 PHE B 34 1 6 HELIX 14 AB5 THR B 38 ARG B 56 1 19 HELIX 15 AB6 SER B 69 GLY B 77 1 9 HELIX 16 AB7 SER B 101 LEU B 103 5 3 HELIX 17 AB8 HIS B 126 ALA B 132 1 7 HELIX 18 AB9 ASP B 154 ASP B 161 1 8 HELIX 19 AC1 SER B 176 VAL B 180 5 5 HELIX 20 AC2 ALA B 202 VAL B 204 5 3 HELIX 21 AC3 HIS B 207 GLU B 221 1 15 SHEET 1 AA1 7 ILE A 82 ALA A 87 0 SHEET 2 AA1 7 ILE A 60 GLY A 66 -1 N GLY A 66 O ILE A 82 SHEET 3 AA1 7 PHE A 231 MET A 233 1 O MET A 233 N MET A 65 SHEET 4 AA1 7 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA1 7 ILE A 134 ILE A 144 -1 O ASP A 135 N VAL A 115 SHEET 6 AA1 7 SER A 165 THR A 170 -1 O ILE A 169 N VAL A 141 SHEET 7 AA1 7 SER A 91 VAL A 92 1 N VAL A 92 O PHE A 168 SHEET 1 AA2 5 ILE A 82 ALA A 87 0 SHEET 2 AA2 5 ILE A 60 GLY A 66 -1 N GLY A 66 O ILE A 82 SHEET 3 AA2 5 PHE A 231 MET A 233 1 O MET A 233 N MET A 65 SHEET 4 AA2 5 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA2 5 VAL A 241 PRO A 242 -1 O VAL A 241 N ILE A 108 SHEET 1 AA3 5 GLY A 96 ASP A 99 0 SHEET 2 AA3 5 SER A 258 ILE A 264 1 O ARG A 262 N VAL A 98 SHEET 3 AA3 5 ASN A 248 TYR A 253 -1 N VAL A 251 O VAL A 259 SHEET 4 AA3 5 GLY A 186 LYS A 191 -1 N VAL A 188 O ARG A 252 SHEET 5 AA3 5 GLU A 194 ALA A 200 -1 O VAL A 196 N MET A 189 SHEET 1 AA4 7 ILE B 82 ALA B 87 0 SHEET 2 AA4 7 ILE B 60 GLY B 66 -1 N GLY B 66 O ILE B 82 SHEET 3 AA4 7 PHE B 231 MET B 233 1 O MET B 233 N LEU B 63 SHEET 4 AA4 7 LYS B 107 THR B 116 -1 N VAL B 114 O ILE B 232 SHEET 5 AA4 7 ILE B 134 ILE B 144 -1 O ASP B 135 N VAL B 115 SHEET 6 AA4 7 SER B 165 THR B 170 -1 O ILE B 169 N VAL B 141 SHEET 7 AA4 7 SER B 91 VAL B 92 1 N VAL B 92 O PHE B 168 SHEET 1 AA5 5 ILE B 82 ALA B 87 0 SHEET 2 AA5 5 ILE B 60 GLY B 66 -1 N GLY B 66 O ILE B 82 SHEET 3 AA5 5 PHE B 231 MET B 233 1 O MET B 233 N LEU B 63 SHEET 4 AA5 5 LYS B 107 THR B 116 -1 N VAL B 114 O ILE B 232 SHEET 5 AA5 5 VAL B 241 PRO B 242 -1 O VAL B 241 N ILE B 108 SHEET 1 AA6 5 GLY B 96 ASP B 99 0 SHEET 2 AA6 5 SER B 258 ILE B 264 1 O ARG B 262 N VAL B 98 SHEET 3 AA6 5 ASN B 248 TYR B 253 -1 N VAL B 251 O VAL B 259 SHEET 4 AA6 5 GLY B 186 LYS B 191 -1 N GLU B 190 O THR B 250 SHEET 5 AA6 5 GLU B 194 ALA B 200 -1 O GLU B 197 N MET B 189 LINK OE1 GLU A 109 MG MG A 301 1555 1555 2.10 LINK OE2 GLU A 111 MG MG A 301 1555 1555 2.01 LINK OE1 GLU A 142 MG MG A 301 1555 1555 2.02 LINK MG MG A 301 O4 OOG A 302 1555 1555 2.09 LINK MG MG A 301 O5 OOG A 302 1555 1555 2.20 LINK MG MG A 301 O HOH A 441 1555 1555 2.09 LINK OE1 GLU B 109 MG MG B 301 1555 1555 2.09 LINK OE2 GLU B 111 MG MG B 301 1555 1555 2.02 LINK OE1 GLU B 142 MG MG B 301 1555 1555 1.96 LINK MG MG B 301 O3 AOOG B 302 1555 1555 2.17 LINK MG MG B 301 O3 BOOG B 302 1555 1555 2.06 LINK MG MG B 301 O5 BOOG B 302 1555 1555 2.26 LINK MG MG B 301 O HOH B 430 1555 1555 2.10 CISPEP 1 GLY A 122 PRO A 123 0 -2.21 CISPEP 2 GLY B 122 PRO B 123 0 -1.07 SITE 1 AC1 5 GLU A 109 GLU A 111 GLU A 142 OOG A 302 SITE 2 AC1 5 HOH A 441 SITE 1 AC2 18 LYS A 64 GLY A 66 LEU A 67 LYS A 72 SITE 2 AC2 18 MET A 76 GLU A 109 GLU A 111 GLU A 142 SITE 3 AC2 18 ILE A 144 PHE A 151 PHE A 153 ALA A 163 SITE 4 AC2 18 SER A 164 GLY A 235 GLY A 236 MG A 301 SITE 5 AC2 18 HOH A 441 HOH A 442 SITE 1 AC3 3 ARG A 50 LEU A 63 HOH A 497 SITE 1 AC4 5 PHE A 231 HOH A 408 HOH A 429 ASP B 94 SITE 2 AC4 5 HOH B 494 SITE 1 AC5 2 HIS A 121 GLY A 122 SITE 1 AC6 7 TYR A 43 TYR A 83 LEU A 218 GLU A 221 SITE 2 AC6 7 ARG A 222 HOH A 550 HOH A 591 SITE 1 AC7 3 LYS A 117 GLU A 194 HOH A 404 SITE 1 AC8 7 LEU A 22 TYR A 89 EDO A 309 HOH A 405 SITE 2 AC8 7 HOH A 418 HOH A 458 HOH A 536 SITE 1 AC9 5 TYR A 89 LYS A 102 ARG A 167 EDO A 308 SITE 2 AC9 5 HOH A 599 SITE 1 AD1 5 GLU B 109 GLU B 111 GLU B 142 OOG B 302 SITE 2 AD1 5 HOH B 430 SITE 1 AD2 18 LYS B 64 MET B 65 GLY B 66 GLU B 109 SITE 2 AD2 18 GLU B 111 GLU B 142 ILE B 144 PHE B 153 SITE 3 AD2 18 VAL B 158 ALA B 163 SER B 164 GLY B 236 SITE 4 AD2 18 MG B 301 EDO B 306 HOH B 401 HOH B 424 SITE 5 AD2 18 HOH B 430 HOH B 548 SITE 1 AD3 8 TYR B 43 TYR B 83 LEU B 218 GLU B 221 SITE 2 AD3 8 ARG B 222 HOH B 447 HOH B 477 HOH B 607 SITE 1 AD4 7 VAL B 61 PHE B 168 PHE B 231 HOH B 450 SITE 2 AD4 7 HOH B 500 HOH B 624 HOH B 630 SITE 1 AD5 4 ILE B 60 GLY B 62 LEU B 63 HOH B 588 SITE 1 AD6 5 HIS B 105 ILE B 144 SER B 146 OOG B 302 SITE 2 AD6 5 HOH B 508 SITE 1 AD7 4 ASN B 19 ASN B 23 HOH B 404 HOH B 486 SITE 1 AD8 4 VAL B 180 LEU B 182 HIS B 207 HOH B 416 SITE 1 AD9 4 ARG B 3 GLU B 221 ARG B 222 HOH B 447 CRYST1 79.328 44.411 81.623 90.00 118.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012606 0.000000 0.006896 0.00000 SCALE2 0.000000 0.022517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013965 0.00000