HEADER METAL BINDING PROTEIN 06-AUG-15 5D2U TITLE CRYSTAL STRUCTURE OF TPPHA VARIANT - H39A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SERIN-THREONIN PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLR2243; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PP2C TYPE PHOSPHATASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SU REVDAT 3 08-NOV-23 5D2U 1 LINK REVDAT 2 27-SEP-17 5D2U 1 REMARK REVDAT 1 04-MAY-16 5D2U 0 JRNL AUTH Y.SI,Y.YUAN,Y.WANG,J.GAO,Y.HU,S.FENG,J.SU JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A JRNL TITL 2 CYANOBACTERIAL PP2C PHOSPHATASE REVEALS INSIGHTS INTO JRNL TITL 3 CATALYTIC MECHANISM AND SUBSTRATE RECOGNITION JRNL REF CATALYSTS 2016 JRNL REFN ESSN 2073-4344 JRNL DOI 10.3390/CATAL6050060 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, PH 7.4, 200MM CACL2, REMARK 280 26%(V/V) PEG3350, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.38050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.38050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.02100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.93600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.02100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.93600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.38050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.02100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.93600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.38050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.02100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.93600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 GLY A 38 O REMARK 470 ALA A 39 O REMARK 470 ALA A 40 O REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ARG A 93 CZ NH1 NH2 REMARK 470 LYS A 127 CD CE NZ REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 SER A 148 OG REMARK 470 LEU A 149 CG CD1 CD2 REMARK 470 THR A 150 OG1 CG2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 GLN A 153 CB CG CD OE1 NE2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 HIS A 157 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 158 O CG CD REMARK 470 TRP A 159 O CB CG CD1 CD2 NE1 CE2 REMARK 470 TRP A 159 CE3 CZ2 CZ3 CH2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 161 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ASP A 171 CB CG OD1 OD2 REMARK 470 SER A 173 CB OG REMARK 470 GLU A 183 CD OE1 OE2 REMARK 470 LYS A 215 CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 411 O HOH A 480 1.99 REMARK 500 O HOH A 449 O HOH A 500 2.14 REMARK 500 O HOH A 428 O HOH A 498 2.14 REMARK 500 O HOH A 487 O HOH A 496 2.15 REMARK 500 O HOH A 466 O HOH A 489 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 439 O HOH A 439 3555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 39 7.58 110.63 REMARK 500 GLN A 87 -73.86 -69.40 REMARK 500 ARG A 88 -37.51 -36.90 REMARK 500 GLN A 89 -70.29 -69.69 REMARK 500 ARG A 93 43.20 -99.28 REMARK 500 ASP A 128 8.04 56.86 REMARK 500 SER A 148 -132.22 -88.39 REMARK 500 THR A 150 39.99 -79.30 REMARK 500 GLN A 153 -32.97 81.83 REMARK 500 ARG A 160 -107.08 54.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 156 HIS A 157 146.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 505 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 506 DISTANCE = 7.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 34 OD2 45.4 REMARK 620 3 ASP A 193 OD1 122.1 77.7 REMARK 620 4 ASP A 231 OD2 144.5 164.5 89.0 REMARK 620 5 HOH A 411 O 91.1 67.9 73.3 116.2 REMARK 620 6 HOH A 429 O 82.4 124.4 154.7 70.4 102.1 REMARK 620 7 HOH A 441 O 76.3 85.6 91.7 86.9 151.6 101.3 REMARK 620 8 HOH A 480 O 123.5 112.7 83.0 72.9 44.8 77.1 159.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 GLY A 35 O 88.7 REMARK 620 3 HOH A 408 O 159.5 84.3 REMARK 620 4 HOH A 429 O 98.5 166.5 92.4 REMARK 620 5 HOH A 430 O 146.2 125.1 44.9 48.3 REMARK 620 6 HOH A 444 O 76.6 97.9 85.3 94.9 96.9 REMARK 620 7 HOH A 476 O 80.7 89.1 118.2 80.9 97.6 156.1 REMARK 620 8 HOH A 484 O 144.8 85.4 53.8 82.0 51.0 138.5 64.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD2 REMARK 620 2 ASP A 193 OD2 76.5 REMARK 620 3 HOH A 454 O 75.7 89.4 REMARK 620 4 HOH A 475 O 85.9 98.1 157.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 198 OE1 REMARK 620 2 HIS A 227 O 76.1 REMARK 620 3 HOH A 443 O 81.1 85.7 REMARK 620 4 HOH A 449 O 133.4 64.0 73.2 REMARK 620 5 HOH A 453 O 75.0 104.7 150.6 136.2 REMARK 620 6 HOH A 461 O 80.6 153.3 77.9 128.6 81.4 REMARK 620 7 HOH A 500 O 166.7 103.0 85.6 40.4 117.6 96.6 REMARK 620 8 HOH A 501 O 137.9 145.9 96.4 83.9 90.0 58.1 43.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 DBREF 5D2U A 1 240 UNP Q8DGS1 Q8DGS1_THEEB 1 240 SEQADV 5D2U GLY A -2 UNP Q8DGS1 EXPRESSION TAG SEQADV 5D2U SER A -1 UNP Q8DGS1 EXPRESSION TAG SEQADV 5D2U HIS A 0 UNP Q8DGS1 EXPRESSION TAG SEQADV 5D2U ALA A 39 UNP Q8DGS1 HIS 39 ENGINEERED MUTATION SEQRES 1 A 243 GLY SER HIS MET ASP VAL ALA GLY LEU THR ASP CYS GLY SEQRES 2 A 243 LEU ILE ARG LYS SER ASN GLN ASP ALA PHE TYR ILE ASP SEQRES 3 A 243 GLU LYS HIS GLN ARG PHE PHE ILE VAL ALA ASP GLY MET SEQRES 4 A 243 GLY GLY ALA ALA GLY GLY GLU GLU ALA SER ARG LEU ALA SEQRES 5 A 243 VAL ASP HIS ILE ARG GLN TYR LEU GLU THR HIS LEU GLU SEQRES 6 A 243 ASP LEU GLN HIS ASP PRO VAL THR LEU LEU ARG GLN ALA SEQRES 7 A 243 PHE LEU ALA ALA ASN HIS ALA ILE VAL GLU GLN GLN ARG SEQRES 8 A 243 GLN ASN SER ALA ARG ALA ASP MET GLY THR THR ALA VAL SEQRES 9 A 243 VAL ILE LEU LEU ASP GLU LYS GLY ASP ARG ALA TRP CYS SEQRES 10 A 243 ALA HIS VAL GLY ASP SER ARG ILE TYR ARG TRP ARG LYS SEQRES 11 A 243 ASP GLN LEU GLN GLN ILE THR SER ASP HIS THR TRP ILE SEQRES 12 A 243 ALA GLN ALA VAL GLN LEU GLY SER LEU THR ILE GLU GLN SEQRES 13 A 243 ALA ARG GLN HIS PRO TRP ARG HIS VAL LEU SER GLN CYS SEQRES 14 A 243 LEU GLY ARG GLU ASP LEU SER GLN ILE ASP ILE GLN PRO SEQRES 15 A 243 ILE ASP LEU GLU PRO GLY ASP ARG LEU LEU LEU CYS SER SEQRES 16 A 243 ASP GLY LEU THR GLU GLU LEU THR ASP ASP VAL ILE SER SEQRES 17 A 243 ILE TYR LEU SER GLU PRO ASN VAL GLN LYS ALA ALA ALA SEQRES 18 A 243 ALA LEU VAL ASP ALA ALA LYS THR HIS GLY GLY ARG ASP SEQRES 19 A 243 ASN VAL THR VAL VAL VAL ILE SER VAL HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HETNAM CA CALCIUM ION FORMUL 2 CA 4(CA 2+) FORMUL 6 HOH *106(H2 O) HELIX 1 AA1 GLY A 42 GLN A 65 1 24 HELIX 2 AA2 ASP A 67 ASN A 90 1 24 HELIX 3 AA3 THR A 138 GLY A 147 1 10 HELIX 4 AA4 SER A 192 GLU A 197 1 6 HELIX 5 AA5 THR A 200 LEU A 208 1 9 HELIX 6 AA6 ASN A 212 HIS A 227 1 16 SHEET 1 AA1 5 ASP A 2 ASP A 8 0 SHEET 2 AA1 5 VAL A 233 SER A 239 -1 O VAL A 237 N ALA A 4 SHEET 3 AA1 5 ARG A 187 CYS A 191 -1 N LEU A 188 O ILE A 238 SHEET 4 AA1 5 ARG A 121 ARG A 126 -1 N TRP A 125 O ARG A 187 SHEET 5 AA1 5 GLN A 129 GLN A 132 -1 O GLN A 131 N ARG A 124 SHEET 1 AA2 3 ASP A 18 ILE A 22 0 SHEET 2 AA2 3 PHE A 29 MET A 36 -1 O ALA A 33 N ALA A 19 SHEET 3 AA2 3 GLY A 97 THR A 98 -1 O GLY A 97 N MET A 36 SHEET 1 AA3 5 ASP A 18 ILE A 22 0 SHEET 2 AA3 5 PHE A 29 MET A 36 -1 O ALA A 33 N ALA A 19 SHEET 3 AA3 5 ALA A 100 LEU A 105 -1 O VAL A 101 N VAL A 32 SHEET 4 AA3 5 ARG A 111 VAL A 117 -1 O TRP A 113 N LEU A 104 SHEET 5 AA3 5 ASP A 176 ASP A 181 -1 O GLN A 178 N CYS A 114 LINK OD1 ASP A 34 CA CA A 301 1555 1555 3.03 LINK OD2 ASP A 34 CA CA A 301 1555 1555 2.45 LINK OD1 ASP A 34 CA CA A 302 1555 1555 2.39 LINK O GLY A 35 CA CA A 302 1555 1555 2.34 LINK OD2 ASP A 119 CA CA A 303 1555 1555 2.46 LINK OD1 ASP A 193 CA CA A 301 1555 1555 2.46 LINK OD2 ASP A 193 CA CA A 303 1555 1555 2.44 LINK OE1 GLU A 198 CA CA A 304 1555 1555 2.50 LINK O HIS A 227 CA CA A 304 1555 1555 2.27 LINK OD2 ASP A 231 CA CA A 301 1555 1555 2.42 LINK CA CA A 301 O HOH A 411 1555 1555 2.16 LINK CA CA A 301 O HOH A 429 1555 1555 2.35 LINK CA CA A 301 O HOH A 441 1555 1555 2.40 LINK CA CA A 301 O HOH A 480 1555 1555 2.81 LINK CA CA A 302 O HOH A 408 1555 1555 2.43 LINK CA CA A 302 O HOH A 429 1555 1555 2.34 LINK CA CA A 302 O HOH A 430 1555 1555 3.15 LINK CA CA A 302 O HOH A 444 1555 1555 2.31 LINK CA CA A 302 O HOH A 476 1555 1555 2.33 LINK CA CA A 302 O HOH A 484 1555 1555 2.47 LINK CA CA A 303 O HOH A 454 1555 1555 2.42 LINK CA CA A 303 O HOH A 475 1555 1555 2.24 LINK CA CA A 304 O HOH A 443 1555 1555 2.58 LINK CA CA A 304 O HOH A 449 1555 1555 2.96 LINK CA CA A 304 O HOH A 453 1555 1555 2.72 LINK CA CA A 304 O HOH A 461 1555 1555 2.67 LINK CA CA A 304 O HOH A 500 1555 1555 3.19 LINK CA CA A 304 O HOH A 501 1555 1555 2.75 CISPEP 1 ALA A 39 ALA A 40 0 -4.99 CISPEP 2 ALA A 40 GLY A 41 0 3.53 CISPEP 3 GLY A 41 GLY A 42 0 -7.17 CISPEP 4 LEU A 146 GLY A 147 0 -8.73 CISPEP 5 GLY A 147 SER A 148 0 10.17 CISPEP 6 GLU A 152 GLN A 153 0 -6.31 CISPEP 7 ARG A 155 GLN A 156 0 12.43 CISPEP 8 TRP A 159 ARG A 160 0 6.39 SITE 1 AC1 8 ASP A 34 ASP A 193 ASP A 231 CA A 302 SITE 2 AC1 8 HOH A 411 HOH A 429 HOH A 441 HOH A 480 SITE 1 AC2 8 ASP A 34 GLY A 35 CA A 301 HOH A 408 SITE 2 AC2 8 HOH A 429 HOH A 444 HOH A 476 HOH A 484 SITE 1 AC3 4 ASP A 119 ASP A 193 HOH A 454 HOH A 475 SITE 1 AC4 7 GLU A 198 HIS A 227 HOH A 443 HOH A 449 SITE 2 AC4 7 HOH A 453 HOH A 461 HOH A 501 CRYST1 38.042 153.872 82.761 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012083 0.00000