data_5D3H # _entry.id 5D3H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5D3H WWPDB D_1000212611 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5D3H _pdbx_database_status.recvd_initial_deposition_date 2015-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wohlwend, D.' 1 'Huegle, M.' 2 'Weitzel, G.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 1518 _citation.page_last 1530 _citation.title '4-Acyl Pyrrole Derivatives Yield Novel Vectors for Designing Inhibitors of the Acetyl-Lysine Recognition Site of BRD4(1).' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.5b01267 _citation.pdbx_database_id_PubMed 26731611 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hugle, M.' 1 primary 'Lucas, X.' 2 primary 'Weitzel, G.' 3 primary 'Ostrovskyi, D.' 4 primary 'Breit, B.' 5 primary 'Gerhardt, S.' 6 primary 'Einsle, O.' 7 primary 'Gunther, S.' 8 primary 'Wohlwend, D.' 9 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5D3H _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.350 _cell.length_a_esd ? _cell.length_b 49.090 _cell.length_b_esd ? _cell.length_c 57.960 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 4' 15012.301 1 ? ? 'First bromodomain, UNP residues 44-168' ? 2 non-polymer syn 'N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]-3-ethyl-4-(hydroxyacetyl)-5-methyl-1H-pyrrole-2-carboxamide' 437.510 1 ? ? ? ? 3 water nat water 18.015 146 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein HUNK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 PRO n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 GLU n 1 8 THR n 1 9 SER n 1 10 ASN n 1 11 PRO n 1 12 ASN n 1 13 LYS n 1 14 PRO n 1 15 LYS n 1 16 ARG n 1 17 GLN n 1 18 THR n 1 19 ASN n 1 20 GLN n 1 21 LEU n 1 22 GLN n 1 23 TYR n 1 24 LEU n 1 25 LEU n 1 26 ARG n 1 27 VAL n 1 28 VAL n 1 29 LEU n 1 30 LYS n 1 31 THR n 1 32 LEU n 1 33 TRP n 1 34 LYS n 1 35 HIS n 1 36 GLN n 1 37 PHE n 1 38 ALA n 1 39 TRP n 1 40 PRO n 1 41 PHE n 1 42 GLN n 1 43 GLN n 1 44 PRO n 1 45 VAL n 1 46 ASP n 1 47 ALA n 1 48 VAL n 1 49 LYS n 1 50 LEU n 1 51 ASN n 1 52 LEU n 1 53 PRO n 1 54 ASP n 1 55 TYR n 1 56 TYR n 1 57 LYS n 1 58 ILE n 1 59 ILE n 1 60 LYS n 1 61 THR n 1 62 PRO n 1 63 MET n 1 64 ASP n 1 65 MET n 1 66 GLY n 1 67 THR n 1 68 ILE n 1 69 LYS n 1 70 LYS n 1 71 ARG n 1 72 LEU n 1 73 GLU n 1 74 ASN n 1 75 ASN n 1 76 TYR n 1 77 TYR n 1 78 TRP n 1 79 ASN n 1 80 ALA n 1 81 GLN n 1 82 GLU n 1 83 CYS n 1 84 ILE n 1 85 GLN n 1 86 ASP n 1 87 PHE n 1 88 ASN n 1 89 THR n 1 90 MET n 1 91 PHE n 1 92 THR n 1 93 ASN n 1 94 CYS n 1 95 TYR n 1 96 ILE n 1 97 TYR n 1 98 ASN n 1 99 LYS n 1 100 PRO n 1 101 GLY n 1 102 ASP n 1 103 ASP n 1 104 ILE n 1 105 VAL n 1 106 LEU n 1 107 MET n 1 108 ALA n 1 109 GLU n 1 110 ALA n 1 111 LEU n 1 112 GLU n 1 113 LYS n 1 114 LEU n 1 115 PHE n 1 116 LEU n 1 117 GLN n 1 118 LYS n 1 119 ILE n 1 120 ASN n 1 121 GLU n 1 122 LEU n 1 123 PRO n 1 124 THR n 1 125 GLU n 1 126 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 126 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD4, HUNK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.pdbx_db_accession O60885 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _struct_ref.pdbx_align_begin 44 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5D3H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60885 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 168 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5D3H _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O60885 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 43 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 57G non-polymer . 'N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]-3-ethyl-4-(hydroxyacetyl)-5-methyl-1H-pyrrole-2-carboxamide' ? 'C20 H27 N3 O6 S' 437.510 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5D3H _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 34.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG3350, Bis-tris' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5D3H _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 27.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11275 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.7 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.266 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 475 _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 74.5 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] -0.22 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.31 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.09 _refine.B_iso_max ? _refine.B_iso_mean 14.789 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5D3H _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 27.1 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10137 _refine.ls_number_reflns_R_free 1115 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.50 _refine.ls_percent_reflns_R_free 9.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.16531 _refine.ls_R_factor_R_free 0.19644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.16188 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'in-house model of apo-BRD4(1)' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.128 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.612 _refine.overall_SU_ML 0.082 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1046 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 1222 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 27.1 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.020 1151 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1089 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.314 1.998 1577 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.767 3.000 2520 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.456 5.000 134 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.911 26.071 56 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.376 15.000 202 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 12.117 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.066 0.200 162 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.021 1320 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 261 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.421 0.580 524 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.417 0.579 523 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 0.523 0.870 662 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 0.523 0.870 663 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 0.558 0.670 627 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.556 0.666 625 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 0.686 0.993 916 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 1.297 6.282 5019 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 0.979 5.911 4890 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 1.377 3.000 2240 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 13.536 5.000 18 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 3.128 5.000 2332 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_R_work 610 _refine_ls_shell.percent_reflns_obs 73.70 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.257 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5D3H _struct.title 'First bromodomain of BRD4 bound to inhibitor XD29' _struct.pdbx_descriptor 'Bromodomain-containing protein 4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5D3H _struct_keywords.text 'Gene regulation, Bromodomain, Inhibitor, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 18 ? VAL A 27 ? THR A 60 VAL A 69 1 ? 10 HELX_P HELX_P2 AA2 VAL A 27 ? LYS A 34 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 AA3 ALA A 38 ? GLN A 42 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 AA4 ASP A 54 ? ILE A 59 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P5 AA5 ASP A 64 ? ASN A 74 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P6 AA6 ASN A 79 ? ASN A 98 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P7 AA7 ASP A 102 ? ASN A 120 ? ASP A 144 ASN A 162 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 57G _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'binding site for residue 57G A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLN A 17 ? GLN A 59 . ? 2_575 ? 2 AC1 16 PRO A 40 ? PRO A 82 . ? 1_555 ? 3 AC1 16 PHE A 41 ? PHE A 83 . ? 1_555 ? 4 AC1 16 GLN A 43 ? GLN A 85 . ? 1_555 ? 5 AC1 16 VAL A 45 ? VAL A 87 . ? 1_555 ? 6 AC1 16 LYS A 49 ? LYS A 91 . ? 1_555 ? 7 AC1 16 LEU A 50 ? LEU A 92 . ? 1_555 ? 8 AC1 16 TYR A 55 ? TYR A 97 . ? 1_555 ? 9 AC1 16 ASN A 75 ? ASN A 117 . ? 2_575 ? 10 AC1 16 TYR A 97 ? TYR A 139 . ? 1_555 ? 11 AC1 16 ASN A 98 ? ASN A 140 . ? 1_555 ? 12 AC1 16 ILE A 104 ? ILE A 146 . ? 1_555 ? 13 AC1 16 HOH C . ? HOH A 306 . ? 1_555 ? 14 AC1 16 HOH C . ? HOH A 314 . ? 1_555 ? 15 AC1 16 HOH C . ? HOH A 324 . ? 1_555 ? 16 AC1 16 HOH C . ? HOH A 382 . ? 1_555 ? # _atom_sites.entry_id 5D3H _atom_sites.fract_transf_matrix[1][1] 0.025413 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020371 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017253 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 43 43 MET MET A . n A 1 2 ASN 2 44 44 ASN ASN A . n A 1 3 PRO 3 45 45 PRO PRO A . n A 1 4 PRO 4 46 46 PRO PRO A . n A 1 5 PRO 5 47 47 PRO PRO A . n A 1 6 PRO 6 48 48 PRO PRO A . n A 1 7 GLU 7 49 49 GLU GLU A . n A 1 8 THR 8 50 50 THR THR A . n A 1 9 SER 9 51 51 SER SER A . n A 1 10 ASN 10 52 52 ASN ASN A . n A 1 11 PRO 11 53 53 PRO PRO A . n A 1 12 ASN 12 54 54 ASN ASN A . n A 1 13 LYS 13 55 55 LYS LYS A . n A 1 14 PRO 14 56 56 PRO PRO A . n A 1 15 LYS 15 57 57 LYS LYS A . n A 1 16 ARG 16 58 58 ARG ARG A . n A 1 17 GLN 17 59 59 GLN GLN A . n A 1 18 THR 18 60 60 THR THR A . n A 1 19 ASN 19 61 61 ASN ASN A . n A 1 20 GLN 20 62 62 GLN GLN A . n A 1 21 LEU 21 63 63 LEU LEU A . n A 1 22 GLN 22 64 64 GLN GLN A . n A 1 23 TYR 23 65 65 TYR TYR A . n A 1 24 LEU 24 66 66 LEU LEU A . n A 1 25 LEU 25 67 67 LEU LEU A . n A 1 26 ARG 26 68 68 ARG ARG A . n A 1 27 VAL 27 69 69 VAL VAL A . n A 1 28 VAL 28 70 70 VAL VAL A . n A 1 29 LEU 29 71 71 LEU LEU A . n A 1 30 LYS 30 72 72 LYS LYS A . n A 1 31 THR 31 73 73 THR THR A . n A 1 32 LEU 32 74 74 LEU LEU A . n A 1 33 TRP 33 75 75 TRP TRP A . n A 1 34 LYS 34 76 76 LYS LYS A . n A 1 35 HIS 35 77 77 HIS HIS A . n A 1 36 GLN 36 78 78 GLN GLN A . n A 1 37 PHE 37 79 79 PHE PHE A . n A 1 38 ALA 38 80 80 ALA ALA A . n A 1 39 TRP 39 81 81 TRP TRP A . n A 1 40 PRO 40 82 82 PRO PRO A . n A 1 41 PHE 41 83 83 PHE PHE A . n A 1 42 GLN 42 84 84 GLN GLN A . n A 1 43 GLN 43 85 85 GLN GLN A . n A 1 44 PRO 44 86 86 PRO PRO A . n A 1 45 VAL 45 87 87 VAL VAL A . n A 1 46 ASP 46 88 88 ASP ASP A . n A 1 47 ALA 47 89 89 ALA ALA A . n A 1 48 VAL 48 90 90 VAL VAL A . n A 1 49 LYS 49 91 91 LYS LYS A . n A 1 50 LEU 50 92 92 LEU LEU A . n A 1 51 ASN 51 93 93 ASN ASN A . n A 1 52 LEU 52 94 94 LEU LEU A . n A 1 53 PRO 53 95 95 PRO PRO A . n A 1 54 ASP 54 96 96 ASP ASP A . n A 1 55 TYR 55 97 97 TYR TYR A . n A 1 56 TYR 56 98 98 TYR TYR A . n A 1 57 LYS 57 99 99 LYS LYS A . n A 1 58 ILE 58 100 100 ILE ILE A . n A 1 59 ILE 59 101 101 ILE ILE A . n A 1 60 LYS 60 102 102 LYS LYS A . n A 1 61 THR 61 103 103 THR THR A . n A 1 62 PRO 62 104 104 PRO PRO A . n A 1 63 MET 63 105 105 MET MET A . n A 1 64 ASP 64 106 106 ASP ASP A . n A 1 65 MET 65 107 107 MET MET A . n A 1 66 GLY 66 108 108 GLY GLY A . n A 1 67 THR 67 109 109 THR THR A . n A 1 68 ILE 68 110 110 ILE ILE A . n A 1 69 LYS 69 111 111 LYS LYS A . n A 1 70 LYS 70 112 112 LYS LYS A . n A 1 71 ARG 71 113 113 ARG ARG A . n A 1 72 LEU 72 114 114 LEU LEU A . n A 1 73 GLU 73 115 115 GLU GLU A . n A 1 74 ASN 74 116 116 ASN ASN A . n A 1 75 ASN 75 117 117 ASN ASN A . n A 1 76 TYR 76 118 118 TYR TYR A . n A 1 77 TYR 77 119 119 TYR TYR A . n A 1 78 TRP 78 120 120 TRP TRP A . n A 1 79 ASN 79 121 121 ASN ASN A . n A 1 80 ALA 80 122 122 ALA ALA A . n A 1 81 GLN 81 123 123 GLN GLN A . n A 1 82 GLU 82 124 124 GLU GLU A . n A 1 83 CYS 83 125 125 CYS CYS A . n A 1 84 ILE 84 126 126 ILE ILE A . n A 1 85 GLN 85 127 127 GLN GLN A . n A 1 86 ASP 86 128 128 ASP ASP A . n A 1 87 PHE 87 129 129 PHE PHE A . n A 1 88 ASN 88 130 130 ASN ASN A . n A 1 89 THR 89 131 131 THR THR A . n A 1 90 MET 90 132 132 MET MET A . n A 1 91 PHE 91 133 133 PHE PHE A . n A 1 92 THR 92 134 134 THR THR A . n A 1 93 ASN 93 135 135 ASN ASN A . n A 1 94 CYS 94 136 136 CYS CYS A . n A 1 95 TYR 95 137 137 TYR TYR A . n A 1 96 ILE 96 138 138 ILE ILE A . n A 1 97 TYR 97 139 139 TYR TYR A . n A 1 98 ASN 98 140 140 ASN ASN A . n A 1 99 LYS 99 141 141 LYS LYS A . n A 1 100 PRO 100 142 142 PRO PRO A . n A 1 101 GLY 101 143 143 GLY GLY A . n A 1 102 ASP 102 144 144 ASP ASP A . n A 1 103 ASP 103 145 145 ASP ASP A . n A 1 104 ILE 104 146 146 ILE ILE A . n A 1 105 VAL 105 147 147 VAL VAL A . n A 1 106 LEU 106 148 148 LEU LEU A . n A 1 107 MET 107 149 149 MET MET A . n A 1 108 ALA 108 150 150 ALA ALA A . n A 1 109 GLU 109 151 151 GLU GLU A . n A 1 110 ALA 110 152 152 ALA ALA A . n A 1 111 LEU 111 153 153 LEU LEU A . n A 1 112 GLU 112 154 154 GLU GLU A . n A 1 113 LYS 113 155 155 LYS LYS A . n A 1 114 LEU 114 156 156 LEU LEU A . n A 1 115 PHE 115 157 157 PHE PHE A . n A 1 116 LEU 116 158 158 LEU LEU A . n A 1 117 GLN 117 159 159 GLN GLN A . n A 1 118 LYS 118 160 160 LYS LYS A . n A 1 119 ILE 119 161 161 ILE ILE A . n A 1 120 ASN 120 162 162 ASN ASN A . n A 1 121 GLU 121 163 163 GLU GLU A . n A 1 122 LEU 122 164 164 LEU LEU A . n A 1 123 PRO 123 165 165 PRO PRO A . n A 1 124 THR 124 166 166 THR THR A . n A 1 125 GLU 125 167 167 GLU GLU A . n A 1 126 GLU 126 168 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 57G 1 201 1 57G L29 A . C 3 HOH 1 301 130 HOH HOH A . C 3 HOH 2 302 56 HOH HOH A . C 3 HOH 3 303 101 HOH HOH A . C 3 HOH 4 304 106 HOH HOH A . C 3 HOH 5 305 143 HOH HOH A . C 3 HOH 6 306 52 HOH HOH A . C 3 HOH 7 307 58 HOH HOH A . C 3 HOH 8 308 87 HOH HOH A . C 3 HOH 9 309 49 HOH HOH A . C 3 HOH 10 310 127 HOH HOH A . C 3 HOH 11 311 68 HOH HOH A . C 3 HOH 12 312 15 HOH HOH A . C 3 HOH 13 313 8 HOH HOH A . C 3 HOH 14 314 4 HOH HOH A . C 3 HOH 15 315 16 HOH HOH A . C 3 HOH 16 316 13 HOH HOH A . C 3 HOH 17 317 43 HOH HOH A . C 3 HOH 18 318 95 HOH HOH A . C 3 HOH 19 319 98 HOH HOH A . C 3 HOH 20 320 60 HOH HOH A . C 3 HOH 21 321 19 HOH HOH A . C 3 HOH 22 322 1 HOH HOH A . C 3 HOH 23 323 69 HOH HOH A . C 3 HOH 24 324 114 HOH HOH A . C 3 HOH 25 325 38 HOH HOH A . C 3 HOH 26 326 119 HOH HOH A . C 3 HOH 27 327 22 HOH HOH A . C 3 HOH 28 328 122 HOH HOH A . C 3 HOH 29 329 66 HOH HOH A . C 3 HOH 30 330 39 HOH HOH A . C 3 HOH 31 331 29 HOH HOH A . C 3 HOH 32 332 51 HOH HOH A . C 3 HOH 33 333 5 HOH HOH A . C 3 HOH 34 334 64 HOH HOH A . C 3 HOH 35 335 45 HOH HOH A . C 3 HOH 36 336 94 HOH HOH A . C 3 HOH 37 337 23 HOH HOH A . C 3 HOH 38 338 50 HOH HOH A . C 3 HOH 39 339 74 HOH HOH A . C 3 HOH 40 340 30 HOH HOH A . C 3 HOH 41 341 67 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 41 HOH HOH A . C 3 HOH 44 344 133 HOH HOH A . C 3 HOH 45 345 76 HOH HOH A . C 3 HOH 46 346 145 HOH HOH A . C 3 HOH 47 347 17 HOH HOH A . C 3 HOH 48 348 31 HOH HOH A . C 3 HOH 49 349 36 HOH HOH A . C 3 HOH 50 350 27 HOH HOH A . C 3 HOH 51 351 53 HOH HOH A . C 3 HOH 52 352 126 HOH HOH A . C 3 HOH 53 353 47 HOH HOH A . C 3 HOH 54 354 9 HOH HOH A . C 3 HOH 55 355 37 HOH HOH A . C 3 HOH 56 356 48 HOH HOH A . C 3 HOH 57 357 33 HOH HOH A . C 3 HOH 58 358 77 HOH HOH A . C 3 HOH 59 359 40 HOH HOH A . C 3 HOH 60 360 18 HOH HOH A . C 3 HOH 61 361 3 HOH HOH A . C 3 HOH 62 362 73 HOH HOH A . C 3 HOH 63 363 125 HOH HOH A . C 3 HOH 64 364 24 HOH HOH A . C 3 HOH 65 365 11 HOH HOH A . C 3 HOH 66 366 97 HOH HOH A . C 3 HOH 67 367 72 HOH HOH A . C 3 HOH 68 368 89 HOH HOH A . C 3 HOH 69 369 139 HOH HOH A . C 3 HOH 70 370 14 HOH HOH A . C 3 HOH 71 371 44 HOH HOH A . C 3 HOH 72 372 78 HOH HOH A . C 3 HOH 73 373 81 HOH HOH A . C 3 HOH 74 374 79 HOH HOH A . C 3 HOH 75 375 34 HOH HOH A . C 3 HOH 76 376 26 HOH HOH A . C 3 HOH 77 377 12 HOH HOH A . C 3 HOH 78 378 7 HOH HOH A . C 3 HOH 79 379 46 HOH HOH A . C 3 HOH 80 380 134 HOH HOH A . C 3 HOH 81 381 63 HOH HOH A . C 3 HOH 82 382 6 HOH HOH A . C 3 HOH 83 383 75 HOH HOH A . C 3 HOH 84 384 90 HOH HOH A . C 3 HOH 85 385 2 HOH HOH A . C 3 HOH 86 386 80 HOH HOH A . C 3 HOH 87 387 131 HOH HOH A . C 3 HOH 88 388 25 HOH HOH A . C 3 HOH 89 389 99 HOH HOH A . C 3 HOH 90 390 135 HOH HOH A . C 3 HOH 91 391 59 HOH HOH A . C 3 HOH 92 392 92 HOH HOH A . C 3 HOH 93 393 111 HOH HOH A . C 3 HOH 94 394 93 HOH HOH A . C 3 HOH 95 395 21 HOH HOH A . C 3 HOH 96 396 10 HOH HOH A . C 3 HOH 97 397 57 HOH HOH A . C 3 HOH 98 398 55 HOH HOH A . C 3 HOH 99 399 110 HOH HOH A . C 3 HOH 100 400 62 HOH HOH A . C 3 HOH 101 401 70 HOH HOH A . C 3 HOH 102 402 61 HOH HOH A . C 3 HOH 103 403 54 HOH HOH A . C 3 HOH 104 404 65 HOH HOH A . C 3 HOH 105 405 88 HOH HOH A . C 3 HOH 106 406 129 HOH HOH A . C 3 HOH 107 407 105 HOH HOH A . C 3 HOH 108 408 132 HOH HOH A . C 3 HOH 109 409 28 HOH HOH A . C 3 HOH 110 410 108 HOH HOH A . C 3 HOH 111 411 128 HOH HOH A . C 3 HOH 112 412 124 HOH HOH A . C 3 HOH 113 413 116 HOH HOH A . C 3 HOH 114 414 146 HOH HOH A . C 3 HOH 115 415 91 HOH HOH A . C 3 HOH 116 416 32 HOH HOH A . C 3 HOH 117 417 118 HOH HOH A . C 3 HOH 118 418 115 HOH HOH A . C 3 HOH 119 419 83 HOH HOH A . C 3 HOH 120 420 20 HOH HOH A . C 3 HOH 121 421 136 HOH HOH A . C 3 HOH 122 422 84 HOH HOH A . C 3 HOH 123 423 120 HOH HOH A . C 3 HOH 124 424 104 HOH HOH A . C 3 HOH 125 425 107 HOH HOH A . C 3 HOH 126 426 103 HOH HOH A . C 3 HOH 127 427 85 HOH HOH A . C 3 HOH 128 428 35 HOH HOH A . C 3 HOH 129 429 137 HOH HOH A . C 3 HOH 130 430 140 HOH HOH A . C 3 HOH 131 431 144 HOH HOH A . C 3 HOH 132 432 123 HOH HOH A . C 3 HOH 133 433 96 HOH HOH A . C 3 HOH 134 434 138 HOH HOH A . C 3 HOH 135 435 112 HOH HOH A . C 3 HOH 136 436 100 HOH HOH A . C 3 HOH 137 437 121 HOH HOH A . C 3 HOH 138 438 82 HOH HOH A . C 3 HOH 139 439 113 HOH HOH A . C 3 HOH 140 440 117 HOH HOH A . C 3 HOH 141 441 141 HOH HOH A . C 3 HOH 142 442 71 HOH HOH A . C 3 HOH 143 443 142 HOH HOH A . C 3 HOH 144 444 102 HOH HOH A . C 3 HOH 145 445 86 HOH HOH A . C 3 HOH 146 446 109 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 7570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-20 2 'Structure model' 1 1 2016-03-09 3 'Structure model' 1 2 2017-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_audit_support # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 0.6209 59.0922 6.7226 0.0433 ? -0.0154 ? -0.0248 ? 0.3692 ? 0.0941 ? 0.0454 ? 5.4240 ? -2.0584 ? -0.9461 ? 7.7861 ? 5.0531 ? 6.6985 ? 0.0280 ? 0.7422 ? 0.0910 ? -0.0459 ? 0.0559 ? 0.2509 ? 0.0592 ? -0.8261 ? -0.0839 ? 2 'X-RAY DIFFRACTION' ? refined 16.3386 54.1199 -5.8058 0.1118 ? -0.0506 ? 0.0087 ? 0.0650 ? 0.0375 ? 0.0992 ? 4.7699 ? 1.7952 ? 3.1574 ? 0.8427 ? 1.9151 ? 5.2562 ? -0.1474 ? 0.1062 ? 0.2522 ? -0.0376 ? -0.0214 ? 0.0994 ? -0.0152 ? -0.2143 ? 0.1687 ? 3 'X-RAY DIFFRACTION' ? refined 20.6718 49.7011 9.2058 0.0686 ? 0.0150 ? 0.0142 ? 0.0144 ? 0.0296 ? 0.0814 ? 4.3013 ? 1.1928 ? -1.8308 ? 0.3369 ? -0.5852 ? 6.1843 ? -0.0849 ? -0.0679 ? -0.0943 ? -0.0391 ? -0.0272 ? -0.0425 ? 0.2198 ? 0.1794 ? 0.1121 ? 4 'X-RAY DIFFRACTION' ? refined 9.3041 52.8958 19.8013 0.0756 ? -0.0126 ? 0.0121 ? 0.0332 ? 0.0195 ? 0.0296 ? 6.7689 ? -3.3234 ? 0.7704 ? 2.6427 ? -0.4352 ? 2.0495 ? -0.1327 ? -0.2088 ? -0.0602 ? 0.2277 ? 0.0065 ? 0.0106 ? 0.1300 ? -0.0558 ? 0.1262 ? 5 'X-RAY DIFFRACTION' ? refined -3.7383 61.0989 20.9740 0.1359 ? 0.0337 ? 0.0501 ? 0.1944 ? -0.0069 ? 0.0628 ? 6.6294 ? 3.3170 ? -1.3876 ? 6.5700 ? -1.1885 ? 1.7525 ? 0.1172 ? 0.0207 ? -0.0030 ? 0.3134 ? -0.0885 ? -0.0641 ? 0.1404 ? -0.2025 ? -0.0287 ? 6 'X-RAY DIFFRACTION' ? refined 7.3424 60.5287 10.9444 0.0333 ? -0.0129 ? -0.0149 ? 0.0264 ? 0.0057 ? 0.0191 ? 2.3693 ? -0.0918 ? -1.5787 ? 0.9529 ? 1.5189 ? 3.2959 ? 0.0847 ? -0.0269 ? 0.0759 ? 0.0071 ? -0.1044 ? 0.0465 ? -0.0310 ? -0.1568 ? 0.0197 ? 7 'X-RAY DIFFRACTION' ? refined 14.9914 60.7002 8.9956 0.0313 ? -0.0070 ? -0.0168 ? 0.0124 ? 0.0075 ? 0.0162 ? 2.0502 ? -1.3023 ? -2.5030 ? 2.2742 ? 2.7374 ? 5.5996 ? 0.0386 ? -0.0454 ? 0.0605 ? -0.0210 ? 0.0563 ? -0.0677 ? -0.1579 ? -0.0077 ? -0.0949 ? 8 'X-RAY DIFFRACTION' ? refined 13.0978 61.7096 26.3315 0.1387 ? 0.0063 ? -0.0325 ? 0.0756 ? 0.0136 ? 0.0468 ? 3.2666 ? -2.1401 ? -4.0492 ? 4.6123 ? 6.0896 ? 8.7018 ? 0.2082 ? -0.0483 ? 0.0843 ? 0.0257 ? -0.0594 ? -0.0941 ? -0.0640 ? -0.0466 ? -0.1487 ? 9 'X-RAY DIFFRACTION' ? refined 24.2812 56.5148 17.4436 0.0787 ? 0.0000 ? -0.0219 ? 0.0805 ? 0.0018 ? 0.0816 ? 6.4268 ? -0.6351 ? -1.7250 ? 2.5046 ? 1.3692 ? 3.2636 ? 0.0383 ? -0.1253 ? 0.0840 ? 0.0564 ? -0.0180 ? -0.2267 ? 0.0405 ? 0.0714 ? -0.0203 ? 10 'X-RAY DIFFRACTION' ? refined 30.4146 54.8826 6.7891 0.1047 ? 0.0059 ? 0.0154 ? 0.1490 ? 0.0318 ? 0.1711 ? 3.5746 ? -0.1806 ? 0.2588 ? 1.8261 ? 1.6823 ? 12.4034 ? -0.2292 ? -0.0495 ? -0.0974 ? -0.1399 ? -0.1831 ? -0.1720 ? 0.4641 ? 0.4023 ? 0.4123 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 43 ? ? A 51 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? A 52 ? ? A 61 ? ? 3 'X-RAY DIFFRACTION' 3 ? ? A 62 ? ? A 75 ? ? 4 'X-RAY DIFFRACTION' 4 ? ? A 76 ? ? A 89 ? ? 5 'X-RAY DIFFRACTION' 5 ? ? A 90 ? ? A 96 ? ? 6 'X-RAY DIFFRACTION' 6 ? ? A 97 ? ? A 114 ? ? 7 'X-RAY DIFFRACTION' 7 ? ? A 115 ? ? A 140 ? ? 8 'X-RAY DIFFRACTION' 8 ? ? A 141 ? ? A 153 ? ? 9 'X-RAY DIFFRACTION' 9 ? ? A 154 ? ? A 161 ? ? 10 'X-RAY DIFFRACTION' 10 ? ? A 162 ? ? A 167 ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0069 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.2.17 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 7.0.9 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 94 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.13 _pdbx_validate_torsion.psi 71.76 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 446 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.52 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 168 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLU _pdbx_unobs_or_zero_occ_residues.label_seq_id 126 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number WO2012/1-1 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]-3-ethyl-4-(hydroxyacetyl)-5-methyl-1H-pyrrole-2-carboxamide' 57G 3 water HOH #