HEADER TRANSCRIPTION 06-AUG-15 5D3H TITLE FIRST BROMODOMAIN OF BRD4 BOUND TO INHIBITOR XD29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST BROMODOMAIN, UNP RESIDUES 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE REGULATION, BROMODOMAIN, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.WOHLWEND,M.HUEGLE,G.WEITZEL REVDAT 4 01-MAY-24 5D3H 1 REMARK REVDAT 3 06-SEP-17 5D3H 1 REMARK REVDAT 2 09-MAR-16 5D3H 1 JRNL REVDAT 1 20-JAN-16 5D3H 0 JRNL AUTH M.HUGLE,X.LUCAS,G.WEITZEL,D.OSTROVSKYI,B.BREIT,S.GERHARDT, JRNL AUTH 2 O.EINSLE,S.GUNTHER,D.WOHLWEND JRNL TITL 4-ACYL PYRROLE DERIVATIVES YIELD NOVEL VECTORS FOR DESIGNING JRNL TITL 2 INHIBITORS OF THE ACETYL-LYSINE RECOGNITION SITE OF BRD4(1). JRNL REF J.MED.CHEM. V. 59 1518 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26731611 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01267 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 10137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1151 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1089 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1577 ; 1.314 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2520 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 4.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;35.911 ;26.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;14.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 162 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1320 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 261 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 524 ; 0.421 ; 0.580 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.417 ; 0.579 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 662 ; 0.523 ; 0.870 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 663 ; 0.523 ; 0.870 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 627 ; 0.558 ; 0.670 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 625 ; 0.556 ; 0.666 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 916 ; 0.686 ; 0.993 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5019 ; 1.297 ; 6.282 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4890 ; 0.979 ; 5.911 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2240 ; 1.377 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 18 ;13.536 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2332 ; 3.128 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6209 59.0922 6.7226 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.3692 REMARK 3 T33: 0.0454 T12: -0.0154 REMARK 3 T13: -0.0248 T23: 0.0941 REMARK 3 L TENSOR REMARK 3 L11: 5.4240 L22: 7.7861 REMARK 3 L33: 6.6985 L12: -2.0584 REMARK 3 L13: -0.9461 L23: 5.0531 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.7422 S13: 0.0910 REMARK 3 S21: -0.0459 S22: 0.0559 S23: 0.2509 REMARK 3 S31: 0.0592 S32: -0.8261 S33: -0.0839 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3386 54.1199 -5.8058 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.0650 REMARK 3 T33: 0.0992 T12: -0.0506 REMARK 3 T13: 0.0087 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.7699 L22: 0.8427 REMARK 3 L33: 5.2562 L12: 1.7952 REMARK 3 L13: 3.1574 L23: 1.9151 REMARK 3 S TENSOR REMARK 3 S11: -0.1474 S12: 0.1062 S13: 0.2522 REMARK 3 S21: -0.0376 S22: -0.0214 S23: 0.0994 REMARK 3 S31: -0.0152 S32: -0.2143 S33: 0.1687 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6718 49.7011 9.2058 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0144 REMARK 3 T33: 0.0814 T12: 0.0150 REMARK 3 T13: 0.0142 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.3013 L22: 0.3369 REMARK 3 L33: 6.1843 L12: 1.1928 REMARK 3 L13: -1.8308 L23: -0.5852 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: -0.0679 S13: -0.0943 REMARK 3 S21: -0.0391 S22: -0.0272 S23: -0.0425 REMARK 3 S31: 0.2198 S32: 0.1794 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3041 52.8958 19.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0332 REMARK 3 T33: 0.0296 T12: -0.0126 REMARK 3 T13: 0.0121 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 6.7689 L22: 2.6427 REMARK 3 L33: 2.0495 L12: -3.3234 REMARK 3 L13: 0.7704 L23: -0.4352 REMARK 3 S TENSOR REMARK 3 S11: -0.1327 S12: -0.2088 S13: -0.0602 REMARK 3 S21: 0.2277 S22: 0.0065 S23: 0.0106 REMARK 3 S31: 0.1300 S32: -0.0558 S33: 0.1262 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7383 61.0989 20.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1944 REMARK 3 T33: 0.0628 T12: 0.0337 REMARK 3 T13: 0.0501 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 6.6294 L22: 6.5700 REMARK 3 L33: 1.7525 L12: 3.3170 REMARK 3 L13: -1.3876 L23: -1.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.1172 S12: 0.0207 S13: -0.0030 REMARK 3 S21: 0.3134 S22: -0.0885 S23: -0.0641 REMARK 3 S31: 0.1404 S32: -0.2025 S33: -0.0287 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3424 60.5287 10.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0264 REMARK 3 T33: 0.0191 T12: -0.0129 REMARK 3 T13: -0.0149 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.3693 L22: 0.9529 REMARK 3 L33: 3.2959 L12: -0.0918 REMARK 3 L13: -1.5787 L23: 1.5189 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: -0.0269 S13: 0.0759 REMARK 3 S21: 0.0071 S22: -0.1044 S23: 0.0465 REMARK 3 S31: -0.0310 S32: -0.1568 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9914 60.7002 8.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0124 REMARK 3 T33: 0.0162 T12: -0.0070 REMARK 3 T13: -0.0168 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.0502 L22: 2.2742 REMARK 3 L33: 5.5996 L12: -1.3023 REMARK 3 L13: -2.5030 L23: 2.7374 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.0454 S13: 0.0605 REMARK 3 S21: -0.0210 S22: 0.0563 S23: -0.0677 REMARK 3 S31: -0.1579 S32: -0.0077 S33: -0.0949 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0978 61.7096 26.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.0756 REMARK 3 T33: 0.0468 T12: 0.0063 REMARK 3 T13: -0.0325 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.2666 L22: 4.6123 REMARK 3 L33: 8.7018 L12: -2.1401 REMARK 3 L13: -4.0492 L23: 6.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.2082 S12: -0.0483 S13: 0.0843 REMARK 3 S21: 0.0257 S22: -0.0594 S23: -0.0941 REMARK 3 S31: -0.0640 S32: -0.0466 S33: -0.1487 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2812 56.5148 17.4436 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0805 REMARK 3 T33: 0.0816 T12: 0.0000 REMARK 3 T13: -0.0219 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.4268 L22: 2.5046 REMARK 3 L33: 3.2636 L12: -0.6351 REMARK 3 L13: -1.7250 L23: 1.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.1253 S13: 0.0840 REMARK 3 S21: 0.0564 S22: -0.0180 S23: -0.2267 REMARK 3 S31: 0.0405 S32: 0.0714 S33: -0.0203 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4146 54.8826 6.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1490 REMARK 3 T33: 0.1711 T12: 0.0059 REMARK 3 T13: 0.0154 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.5746 L22: 1.8261 REMARK 3 L33: 12.4034 L12: -0.1806 REMARK 3 L13: 0.2588 L23: 1.6823 REMARK 3 S TENSOR REMARK 3 S11: -0.2292 S12: -0.0495 S13: -0.0974 REMARK 3 S21: -0.1399 S22: -0.1831 S23: -0.1720 REMARK 3 S31: 0.4641 S32: 0.4023 S33: 0.4123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.0.9 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11275 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: IN-HOUSE MODEL OF APO-BRD4(1) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, BIS-TRIS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 94 71.76 -117.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 446 DISTANCE = 6.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 57G A 201 DBREF 5D3H A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 5D3H MET A 43 UNP O60885 INITIATING METHIONINE SEQRES 1 A 126 MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 A 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 A 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 A 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 A 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 A 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 A 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 A 126 LYS ILE ASN GLU LEU PRO THR GLU GLU HET 57G A 201 30 HETNAM 57G N-[5-(DIETHYLSULFAMOYL)-2-HYDROXYPHENYL]-3-ETHYL-4- HETNAM 2 57G (HYDROXYACETYL)-5-METHYL-1H-PYRROLE-2-CARBOXAMIDE FORMUL 2 57G C20 H27 N3 O6 S FORMUL 3 HOH *146(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 SITE 1 AC1 16 GLN A 59 PRO A 82 PHE A 83 GLN A 85 SITE 2 AC1 16 VAL A 87 LYS A 91 LEU A 92 TYR A 97 SITE 3 AC1 16 ASN A 117 TYR A 139 ASN A 140 ILE A 146 SITE 4 AC1 16 HOH A 306 HOH A 314 HOH A 324 HOH A 382 CRYST1 39.350 49.090 57.960 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017253 0.00000