HEADER TRANSCRIPTION 06-AUG-15 5D3N TITLE FIRST BROMODOMAIN OF BRD4 BOUND TO INHIBITOR XD40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST BROMODOMAIN, UNP RESIDUES 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE REGULATION, BROMODOMAIN, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.WOHLWEND,M.HUEGLE REVDAT 3 06-SEP-17 5D3N 1 REMARK REVDAT 2 09-MAR-16 5D3N 1 JRNL REVDAT 1 20-JAN-16 5D3N 0 JRNL AUTH M.HUGLE,X.LUCAS,G.WEITZEL,D.OSTROVSKYI,B.BREIT,S.GERHARDT, JRNL AUTH 2 O.EINSLE,S.GUNTHER,D.WOHLWEND JRNL TITL 4-ACYL PYRROLE DERIVATIVES YIELD NOVEL VECTORS FOR DESIGNING JRNL TITL 2 INHIBITORS OF THE ACETYL-LYSINE RECOGNITION SITE OF BRD4(1). JRNL REF J.MED.CHEM. V. 59 1518 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26731611 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01267 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.93000 REMARK 3 B22 (A**2) : -1.74000 REMARK 3 B33 (A**2) : -2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.327 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1131 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1074 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1546 ; 1.322 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2481 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 129 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;35.529 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 199 ;16.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;13.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1281 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 513 ; 1.111 ; 2.419 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 512 ; 1.105 ; 2.414 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 643 ; 1.703 ; 3.623 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 644 ; 1.702 ; 3.628 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 618 ; 1.061 ; 2.510 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 619 ; 1.060 ; 2.511 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 904 ; 1.641 ; 3.744 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4812 ; 4.210 ;22.898 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4768 ; 4.152 ;22.794 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5441 8.9128 15.7204 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.1093 REMARK 3 T33: 0.0808 T12: 0.0695 REMARK 3 T13: -0.0748 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 6.1700 L22: 0.4470 REMARK 3 L33: 4.7989 L12: -1.4284 REMARK 3 L13: 1.1119 L23: -0.2148 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: -0.1593 S13: 0.1384 REMARK 3 S21: 0.1471 S22: 0.1011 S23: -0.1128 REMARK 3 S31: -0.4165 S32: -0.3937 S33: -0.2265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6208 -6.0668 27.0579 REMARK 3 T TENSOR REMARK 3 T11: 0.1527 T22: 0.1243 REMARK 3 T33: 0.1792 T12: -0.0430 REMARK 3 T13: -0.0031 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1476 L22: 9.6614 REMARK 3 L33: 1.2301 L12: 1.0472 REMARK 3 L13: 0.0042 L23: -1.6208 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0315 S13: 0.0042 REMARK 3 S21: 0.2814 S22: 0.0253 S23: 0.1452 REMARK 3 S31: 0.0632 S32: -0.1827 S33: -0.0701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2853 -14.4333 15.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.2524 REMARK 3 T33: 0.3002 T12: 0.0927 REMARK 3 T13: -0.0155 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 6.3512 L22: 8.6556 REMARK 3 L33: 4.6280 L12: -0.8425 REMARK 3 L13: -1.2201 L23: 3.6582 REMARK 3 S TENSOR REMARK 3 S11: 0.1469 S12: -0.1479 S13: 0.0489 REMARK 3 S21: 0.8169 S22: 0.0630 S23: -0.4128 REMARK 3 S31: 0.7895 S32: 0.8465 S33: -0.2098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1918 -2.8478 4.0114 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.1417 REMARK 3 T33: 0.3927 T12: 0.0450 REMARK 3 T13: 0.0738 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 2.0272 L22: 10.7152 REMARK 3 L33: 7.6066 L12: -2.7389 REMARK 3 L13: 1.2718 L23: 2.1557 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.0159 S13: -0.4050 REMARK 3 S21: -0.0260 S22: 0.0840 S23: -0.5808 REMARK 3 S31: 0.4698 S32: 0.6346 S33: -0.1050 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9706 13.0136 3.3182 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1633 REMARK 3 T33: 0.0698 T12: 0.0335 REMARK 3 T13: 0.0369 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 7.1479 L22: 1.9210 REMARK 3 L33: 4.7917 L12: 0.7564 REMARK 3 L13: 3.4251 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.2741 S12: 0.6785 S13: 0.1537 REMARK 3 S21: -0.0272 S22: 0.3833 S23: -0.1714 REMARK 3 S31: -0.6287 S32: -0.0595 S33: -0.1092 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2367 4.7282 8.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1339 REMARK 3 T33: 0.0817 T12: 0.0033 REMARK 3 T13: -0.0032 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 5.7045 L22: 2.3596 REMARK 3 L33: 2.3386 L12: -2.2119 REMARK 3 L13: 1.7015 L23: -2.2935 REMARK 3 S TENSOR REMARK 3 S11: -0.1467 S12: -0.0116 S13: 0.1068 REMARK 3 S21: 0.0837 S22: 0.1174 S23: -0.0557 REMARK 3 S31: -0.1037 S32: -0.1983 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7000 -3.3324 17.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1807 REMARK 3 T33: 0.2151 T12: -0.0617 REMARK 3 T13: -0.0766 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 7.6269 L22: 5.5886 REMARK 3 L33: 9.1337 L12: -6.5227 REMARK 3 L13: 2.3110 L23: -1.9335 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.4055 S13: 0.5510 REMARK 3 S21: 0.0663 S22: 0.3070 S23: -0.5080 REMARK 3 S31: 0.1100 S32: 0.4019 S33: -0.2528 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6053 -9.5072 17.7995 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.1596 REMARK 3 T33: 0.0620 T12: -0.0402 REMARK 3 T13: 0.0558 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.0427 L22: 5.9574 REMARK 3 L33: 6.1169 L12: 0.4988 REMARK 3 L13: -0.3481 L23: -3.5101 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.0126 S13: 0.0126 REMARK 3 S21: -0.0595 S22: 0.0962 S23: 0.1852 REMARK 3 S31: 0.5105 S32: -0.4782 S33: -0.0693 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9461 -1.0458 1.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.3691 REMARK 3 T33: 0.0348 T12: -0.0536 REMARK 3 T13: 0.0042 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.5094 L22: 10.2042 REMARK 3 L33: 10.2158 L12: -2.1096 REMARK 3 L13: 3.4180 L23: -5.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.1605 S12: 0.2339 S13: -0.0284 REMARK 3 S21: -0.5549 S22: -0.1345 S23: 0.1735 REMARK 3 S31: 0.5722 S32: -0.3761 S33: -0.0260 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1139 -0.0683 -6.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1626 REMARK 3 T33: 0.1051 T12: 0.0325 REMARK 3 T13: 0.1128 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 3.5375 L22: 2.0776 REMARK 3 L33: 8.2965 L12: -1.3103 REMARK 3 L13: 0.8610 L23: -3.8875 REMARK 3 S TENSOR REMARK 3 S11: -0.1992 S12: 0.2699 S13: -0.0979 REMARK 3 S21: 0.0050 S22: 0.0358 S23: -0.0772 REMARK 3 S31: -0.0317 S32: -0.3014 S33: 0.1634 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3122 -10.2786 -0.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1124 REMARK 3 T33: 0.1429 T12: 0.0131 REMARK 3 T13: 0.0181 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 5.0551 L22: 6.9976 REMARK 3 L33: 6.0986 L12: -0.1503 REMARK 3 L13: -4.9523 L23: -2.8000 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.1902 S13: -0.1693 REMARK 3 S21: -0.0542 S22: -0.0466 S23: 0.0490 REMARK 3 S31: 0.1108 S32: -0.1589 S33: 0.1262 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8674 -19.5711 10.6974 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1022 REMARK 3 T33: 0.2536 T12: -0.0036 REMARK 3 T13: 0.0090 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.8111 L22: 0.7332 REMARK 3 L33: 8.2303 L12: 0.1023 REMARK 3 L13: 0.1820 L23: -2.3865 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.1775 S13: -0.1176 REMARK 3 S21: -0.0102 S22: -0.0010 S23: -0.0707 REMARK 3 S31: 0.1754 S32: -0.0271 S33: -0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 123 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 104.71 -165.13 REMARK 500 LEU A 94 77.52 -113.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L40 A 201 DBREF 5D3N A 43 168 UNP O60885 BRD4_HUMAN 43 168 SEQADV 5D3N MET A 43 UNP O60885 THR 43 ENGINEERED MUTATION SEQRES 1 A 126 MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 A 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 A 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 A 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 A 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 A 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 A 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 A 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 A 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 A 126 LYS ILE ASN GLU LEU PRO THR GLU GLU HET L40 A 201 26 HETNAM L40 4-ACETYL-3-ETHYL-5-METHYL-N-[2-METHYL-5- HETNAM 2 L40 (METHYLSULFAMOYL)PHENYL]-1H-PYRROLE-2-CARBOXAMIDE FORMUL 2 L40 C18 H23 N3 O4 S FORMUL 3 HOH *62(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 SITE 1 AC1 12 TRP A 81 PRO A 82 VAL A 87 LYS A 91 SITE 2 AC1 12 LEU A 92 ASP A 96 LYS A 99 ASN A 140 SITE 3 AC1 12 ILE A 146 HOH A 316 HOH A 325 HOH A 341 CRYST1 39.080 43.500 79.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012641 0.00000