HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-AUG-15 5D41 TITLE EGFR KINASE DOMAIN IN COMPLEX WITH MUTANT SELECTIVE ALLOSTERIC TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRIEX 1.1 KEYWDS ALLOSTERIC INHIBITOR, EGFR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.YUN,E.PARK,M.J.ECK REVDAT 4 27-SEP-23 5D41 1 LINK REVDAT 3 25-DEC-19 5D41 1 REMARK REVDAT 2 18-APR-18 5D41 1 JRNL REMARK REVDAT 1 08-JUN-16 5D41 0 JRNL AUTH Y.JIA,C.H.YUN,E.PARK,D.ERCAN,M.MANUIA,J.JUAREZ,C.XU,K.RHEE, JRNL AUTH 2 T.CHEN,H.ZHANG,S.PALAKURTHI,J.JANG,G.LELAIS,M.DIDONATO, JRNL AUTH 3 B.BURSULAYA,P.Y.MICHELLYS,R.EPPLE,T.H.MARSILJE,M.MCNEILL, JRNL AUTH 4 W.LU,J.HARRIS,S.BENDER,K.K.WONG,P.A.JANNE,M.J.ECK JRNL TITL OVERCOMING EGFR(T790M) AND EGFR(C797S) RESISTANCE WITH JRNL TITL 2 MUTANT-SELECTIVE ALLOSTERIC INHIBITORS. JRNL REF NATURE V. 534 129 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27251290 JRNL DOI 10.1038/NATURE17960 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 33348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2442 - 5.2854 0.98 2742 145 0.1594 0.1638 REMARK 3 2 5.2854 - 4.1964 0.99 2703 141 0.1471 0.1864 REMARK 3 3 4.1964 - 3.6663 0.99 2683 168 0.1488 0.1938 REMARK 3 4 3.6663 - 3.3312 0.99 2667 139 0.1667 0.2053 REMARK 3 5 3.3312 - 3.0925 0.98 2659 135 0.1771 0.1955 REMARK 3 6 3.0925 - 2.9103 0.98 2640 138 0.1853 0.2255 REMARK 3 7 2.9103 - 2.7645 0.98 2624 144 0.1894 0.2148 REMARK 3 8 2.7645 - 2.6442 0.98 2639 156 0.1911 0.2795 REMARK 3 9 2.6442 - 2.5424 0.98 2612 134 0.2078 0.2215 REMARK 3 10 2.5424 - 2.4547 0.97 2619 122 0.2081 0.2526 REMARK 3 11 2.4547 - 2.3780 0.96 2564 127 0.2197 0.2412 REMARK 3 12 2.3780 - 2.3100 0.94 2511 136 0.2379 0.2795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5032 REMARK 3 ANGLE : 1.134 6830 REMARK 3 CHIRALITY : 0.045 757 REMARK 3 PLANARITY : 0.006 854 REMARK 3 DIHEDRAL : 15.554 1887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 42.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEG3350, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.56650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.24850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.56650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.24850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 692 REMARK 465 SER A 693 REMARK 465 THR A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 GLU A 697 REMARK 465 ALA A 859 REMARK 465 LYS A 860 REMARK 465 LEU A 861 REMARK 465 LEU A 862 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 GLU A 1015 REMARK 465 TYR A 1016 REMARK 465 LEU A 1017 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 465 GLY B 692 REMARK 465 SER B 693 REMARK 465 THR B 694 REMARK 465 SER B 695 REMARK 465 GLY B 696 REMARK 465 GLU B 697 REMARK 465 ALA B 698 REMARK 465 PRO B 699 REMARK 465 ASN B 700 REMARK 465 GLY B 863 REMARK 465 ALA B 864 REMARK 465 GLU B 865 REMARK 465 GLU B 866 REMARK 465 LYS B 867 REMARK 465 GLU B 868 REMARK 465 TYR B 869 REMARK 465 HIS B 870 REMARK 465 ALA B 871 REMARK 465 GLU B 872 REMARK 465 GLY B 873 REMARK 465 GLY B 874 REMARK 465 GLU B 1015 REMARK 465 TYR B 1016 REMARK 465 LEU B 1017 REMARK 465 ILE B 1018 REMARK 465 PRO B 1019 REMARK 465 GLN B 1020 REMARK 465 GLN B 1021 REMARK 465 GLY B 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 VAL A1010 CG1 CG2 REMARK 470 LYS B 754 CG CD CE NZ REMARK 470 LEU B 858 CD1 REMARK 470 LYS B 860 CG CD CE NZ REMARK 470 LEU B 861 CG CD1 CD2 REMARK 470 LEU B 862 CG CD1 CD2 REMARK 470 HIS B 988 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1B ANP B 2001 O HOH B 2101 1.85 REMARK 500 O HOH B 2247 O HOH B 2271 1.88 REMARK 500 O HOH A 1301 O HOH A 1390 1.91 REMARK 500 O HOH B 2181 O HOH B 2242 1.92 REMARK 500 O HOH A 1347 O HOH A 1398 1.93 REMARK 500 O HOH A 1354 O HOH A 1371 1.93 REMARK 500 O HOH B 2273 O HOH B 2276 1.94 REMARK 500 O HOH B 2212 O HOH B 2272 1.94 REMARK 500 NH1 ARG A 986 O HOH A 1201 1.95 REMARK 500 O HOH B 2236 O HOH B 2267 1.96 REMARK 500 O HOH B 2150 O HOH B 2264 1.96 REMARK 500 O PRO B 733 O HOH B 2102 2.00 REMARK 500 O HOH A 1349 O HOH A 1402 2.00 REMARK 500 OE1 GLU A 922 O HOH A 1202 2.02 REMARK 500 O HOH A 1403 O HOH A 1409 2.03 REMARK 500 O HOH B 2182 O HOH B 2260 2.04 REMARK 500 OE2 GLU B 985 O HOH B 2103 2.06 REMARK 500 O HOH B 2249 O HOH B 2269 2.06 REMARK 500 O HOH B 2180 O HOH B 2251 2.10 REMARK 500 OD2 ASP B 1006 O HOH B 2104 2.11 REMARK 500 O HOH A 1208 O HOH A 1342 2.11 REMARK 500 NH2 ARG B 973 O HOH B 2105 2.12 REMARK 500 NH2 ARG A 962 O HOH A 1203 2.14 REMARK 500 OE1 GLU B 1004 O HOH B 2106 2.14 REMARK 500 OE1 GLN A 701 O HOH A 1204 2.14 REMARK 500 OE2 GLU B 749 O HOH B 2107 2.14 REMARK 500 O HOH A 1318 O HOH A 1329 2.15 REMARK 500 O HOH A 1292 O HOH A 1393 2.15 REMARK 500 O THR A 783 O HOH A 1205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1378 O HOH B 2190 4455 1.85 REMARK 500 O HOH A 1355 O HOH B 2203 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 807 44.25 -104.32 REMARK 500 ARG A 836 -14.31 78.51 REMARK 500 ASP A 837 38.76 -145.38 REMARK 500 ASP A1003 75.94 -150.30 REMARK 500 ILE B 715 -75.51 -106.51 REMARK 500 THR B 783 -125.86 -115.02 REMARK 500 ARG B 836 -10.72 80.95 REMARK 500 ASP B 837 42.77 -145.50 REMARK 500 ASP B1003 74.37 -153.15 REMARK 500 MET B1007 144.57 -170.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1415 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2283 DISTANCE = 6.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 842 OD1 REMARK 620 2 ASP A 855 OD2 89.4 REMARK 620 3 ANP A1102 O1B 95.2 175.3 REMARK 620 4 ANP A1102 O2A 170.9 83.4 92.1 REMARK 620 5 HOH A1212 O 95.5 93.3 85.5 90.6 REMARK 620 6 HOH A1304 O 83.6 87.0 94.4 90.4 179.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 842 OD1 REMARK 620 2 ASP B 855 OD2 86.9 REMARK 620 3 ANP B2001 O2G 116.2 117.4 REMARK 620 4 ANP B2001 O2B 89.2 166.5 75.9 REMARK 620 5 ANP B2001 O1A 159.3 84.4 84.5 94.9 REMARK 620 6 HOH B2192 O 75.8 81.2 157.1 85.3 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 57N A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 2001 DBREF 5D41 A 693 1022 UNP P00533 EGFR_HUMAN 693 1022 DBREF 5D41 B 693 1022 UNP P00533 EGFR_HUMAN 693 1022 SEQADV 5D41 GLY A 692 UNP P00533 EXPRESSION TAG SEQADV 5D41 SER A 693 UNP P00533 THR 693 EXPRESSION TAG SEQADV 5D41 THR A 694 UNP P00533 PRO 694 EXPRESSION TAG SEQADV 5D41 MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 5D41 ARG A 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQADV 5D41 GLY B 692 UNP P00533 EXPRESSION TAG SEQADV 5D41 SER B 693 UNP P00533 THR 693 EXPRESSION TAG SEQADV 5D41 THR B 694 UNP P00533 PRO 694 EXPRESSION TAG SEQADV 5D41 MET B 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQADV 5D41 ARG B 948 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 331 GLY SER THR SER GLY GLU ALA PRO ASN GLN ALA LEU LEU SEQRES 2 A 331 ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL SEQRES 3 A 331 LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU SEQRES 4 A 331 TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA SEQRES 5 A 331 ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN SEQRES 6 A 331 LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL SEQRES 7 A 331 ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU SEQRES 8 A 331 THR SER THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE SEQRES 9 A 331 GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN SEQRES 10 A 331 ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE SEQRES 11 A 331 ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL SEQRES 12 A 331 HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR SEQRES 13 A 331 PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS SEQRES 14 A 331 LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY SEQRES 15 A 331 GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE SEQRES 16 A 331 LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER SEQRES 17 A 331 TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER SEQRES 18 A 331 LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER SEQRES 19 A 331 ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE SEQRES 20 A 331 CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP SEQRES 21 A 331 MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU SEQRES 22 A 331 ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG SEQRES 23 A 331 TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SEQRES 24 A 331 SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP SEQRES 25 A 331 GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR SEQRES 26 A 331 LEU ILE PRO GLN GLN GLY SEQRES 1 B 331 GLY SER THR SER GLY GLU ALA PRO ASN GLN ALA LEU LEU SEQRES 2 B 331 ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL SEQRES 3 B 331 LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU SEQRES 4 B 331 TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA SEQRES 5 B 331 ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN SEQRES 6 B 331 LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL SEQRES 7 B 331 ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU SEQRES 8 B 331 THR SER THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE SEQRES 9 B 331 GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN SEQRES 10 B 331 ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE SEQRES 11 B 331 ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL SEQRES 12 B 331 HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR SEQRES 13 B 331 PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS SEQRES 14 B 331 LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY SEQRES 15 B 331 GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE SEQRES 16 B 331 LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER SEQRES 17 B 331 TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER SEQRES 18 B 331 LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER SEQRES 19 B 331 ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE SEQRES 20 B 331 CYS THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP SEQRES 21 B 331 MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU SEQRES 22 B 331 ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG SEQRES 23 B 331 TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SEQRES 24 B 331 SER PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP SEQRES 25 B 331 GLU GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR SEQRES 26 B 331 LEU ILE PRO GLN GLN GLY HET MG A1101 1 HET ANP A1102 31 HET 57N A1103 25 HET MG B2000 1 HET ANP B2001 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM 57N (2R)-2-(1-OXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL)-2-PHENYL-N- HETNAM 2 57N (1,3-THIAZOL-2-YL)ACETAMIDE FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 57N C19 H15 N3 O2 S FORMUL 8 HOH *398(H2 O) HELIX 1 AA1 ASN A 700 LEU A 704 5 5 HELIX 2 AA2 LYS A 708 THR A 710 5 3 HELIX 3 AA3 SER A 752 ALA A 767 1 16 HELIX 4 AA4 CYS A 797 HIS A 805 1 9 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 SER A 921 5 3 HELIX 11 AB2 GLU A 922 LYS A 929 1 8 HELIX 12 AB3 THR A 940 TRP A 951 1 12 HELIX 13 AB4 ASP A 954 ARG A 958 5 5 HELIX 14 AB5 LYS A 960 ASP A 974 1 15 HELIX 15 AB6 ASP A 974 LEU A 979 1 6 HELIX 16 AB7 GLY A 983 MET A 987 5 5 HELIX 17 AB8 SER A 991 ASP A 1003 1 13 HELIX 18 AB9 LYS B 708 THR B 710 5 3 HELIX 19 AC1 SER B 752 VAL B 769 1 18 HELIX 20 AC2 CYS B 797 HIS B 805 1 9 HELIX 21 AC3 GLY B 810 ARG B 831 1 22 HELIX 22 AC4 ALA B 839 ARG B 841 5 3 HELIX 23 AC5 PRO B 877 MET B 881 5 5 HELIX 24 AC6 ALA B 882 ARG B 889 1 8 HELIX 25 AC7 THR B 892 THR B 909 1 18 HELIX 26 AC8 PRO B 919 SER B 921 5 3 HELIX 27 AC9 GLU B 922 LYS B 929 1 8 HELIX 28 AD1 THR B 940 TRP B 951 1 12 HELIX 29 AD2 ASP B 954 ARG B 958 5 5 HELIX 30 AD3 LYS B 960 ASP B 974 1 15 HELIX 31 AD4 PRO B 975 TYR B 978 5 4 HELIX 32 AD5 GLY B 983 MET B 987 5 5 HELIX 33 AD6 SER B 991 ASP B 1003 1 13 SHEET 1 AA1 6 ARG A 705 ILE A 706 0 SHEET 2 AA1 6 GLY A 779 CYS A 781 1 O ILE A 780 N ARG A 705 SHEET 3 AA1 6 GLN A 787 MET A 790 -1 O GLN A 787 N CYS A 781 SHEET 4 AA1 6 ILE A 740 LEU A 747 -1 N LYS A 745 O LEU A 788 SHEET 5 AA1 6 GLY A 724 TRP A 731 -1 N TYR A 727 O ILE A 744 SHEET 6 AA1 6 PHE A 712 SER A 720 -1 N LYS A 716 O LYS A 728 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SHEET 1 AA3 6 ARG B 705 ILE B 706 0 SHEET 2 AA3 6 GLY B 779 LEU B 782 1 O ILE B 780 N ARG B 705 SHEET 3 AA3 6 VAL B 786 GLN B 791 -1 O GLN B 787 N CYS B 781 SHEET 4 AA3 6 ILE B 740 LEU B 747 -1 N ALA B 743 O MET B 790 SHEET 5 AA3 6 GLY B 724 TRP B 731 -1 N TRP B 731 O ILE B 740 SHEET 6 AA3 6 PHE B 712 SER B 720 -1 N LEU B 718 O VAL B 726 SHEET 1 AA4 2 VAL B 843 THR B 847 0 SHEET 2 AA4 2 HIS B 850 ILE B 853 -1 O LYS B 852 N LEU B 844 LINK OD1 ASN A 842 MG MG A1101 1555 1555 2.05 LINK OD2 ASP A 855 MG MG A1101 1555 1555 2.01 LINK MG MG A1101 O1B ANP A1102 1555 1555 1.90 LINK MG MG A1101 O2A ANP A1102 1555 1555 2.17 LINK MG MG A1101 O HOH A1212 1555 1555 2.22 LINK MG MG A1101 O HOH A1304 1555 1555 2.29 LINK OD1 ASN B 842 MG MG B2000 1555 1555 2.13 LINK OD2 ASP B 855 MG MG B2000 1555 1555 2.07 LINK MG MG B2000 O2G ANP B2001 1555 1555 2.48 LINK MG MG B2000 O2B ANP B2001 1555 1555 1.84 LINK MG MG B2000 O1A ANP B2001 1555 1555 2.20 LINK MG MG B2000 O HOH B2192 1555 1555 2.56 CISPEP 1 LYS A 806 ASP A 807 0 -6.45 SITE 1 AC1 5 ASN A 842 ASP A 855 ANP A1102 HOH A1212 SITE 2 AC1 5 HOH A1304 SITE 1 AC2 28 SER A 720 GLY A 721 ALA A 722 GLY A 724 SITE 2 AC2 28 VAL A 726 ALA A 743 LYS A 745 MET A 790 SITE 3 AC2 28 GLN A 791 MET A 793 CYS A 797 ASP A 837 SITE 4 AC2 28 ARG A 841 ASN A 842 LEU A 844 ASP A 855 SITE 5 AC2 28 MG A1101 57N A1103 HOH A1212 HOH A1217 SITE 6 AC2 28 HOH A1218 HOH A1246 HOH A1283 HOH A1285 SITE 7 AC2 28 HOH A1294 HOH A1304 HOH A1330 HOH A1338 SITE 1 AC3 13 ALA A 743 ILE A 744 LYS A 745 ILE A 759 SITE 2 AC3 13 MET A 766 CYS A 775 LEU A 777 LEU A 788 SITE 3 AC3 13 MET A 790 ASP A 855 PHE A 856 LEU A 858 SITE 4 AC3 13 ANP A1102 SITE 1 AC4 4 ASN B 842 ASP B 855 ANP B2001 HOH B2192 SITE 1 AC5 22 GLY B 719 SER B 720 GLY B 721 ALA B 722 SITE 2 AC5 22 GLY B 724 VAL B 726 ALA B 743 LYS B 745 SITE 3 AC5 22 MET B 790 GLN B 791 MET B 793 CYS B 797 SITE 4 AC5 22 ASP B 837 ARG B 841 ASN B 842 ASP B 855 SITE 5 AC5 22 MG B2000 HOH B2101 HOH B2145 HOH B2147 SITE 6 AC5 22 HOH B2192 HOH B2211 CRYST1 155.133 72.497 75.998 90.00 113.24 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006446 0.000000 0.002769 0.00000 SCALE2 0.000000 0.013794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014321 0.00000