HEADER IMMUNE SYSTEM 07-AUG-15 5D4K TITLE CRYSTAL STRUCTURE OF THE HUMAN POLYMERIC IG RECEPTOR (PIGR) ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERIC IMMUNOGLOBULIN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN (UNP RESIDUES 19-565); COMPND 5 SYNONYM: POLY-IG RECEPTOR,HEPATOCELLULAR CARCINOMA-ASSOCIATED PROTEIN COMPND 6 TB6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIGR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTT5 KEYWDS IG SUPER FAMILY (IGSF), POLYMERIC IG-BINDING PROTEIN, MUCOSAL KEYWDS 2 IMMUNITY, SECRETORY COMPONENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.M.STADTMUELLER,P.J.BJORKMAN REVDAT 5 27-SEP-23 5D4K 1 HETSYN LINK REVDAT 4 29-JUL-20 5D4K 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-DEC-19 5D4K 1 REMARK REVDAT 2 27-SEP-17 5D4K 1 REMARK REVDAT 1 16-MAR-16 5D4K 0 JRNL AUTH B.M.STADTMUELLER,K.E.HUEY-TUBMAN,C.J.LOPEZ,Z.YANG, JRNL AUTH 2 W.L.HUBBELL,P.J.BJORKMAN JRNL TITL THE STRUCTURE AND DYNAMICS OF SECRETORY COMPONENT AND ITS JRNL TITL 2 INTERACTIONS WITH POLYMERIC IMMUNOGLOBULINS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 26943617 JRNL DOI 10.7554/ELIFE.10640 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 46450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9873 - 6.2557 0.94 3318 147 0.1956 0.2366 REMARK 3 2 6.2557 - 4.9691 0.93 3282 142 0.1837 0.2392 REMARK 3 3 4.9691 - 4.3421 0.96 3356 149 0.1502 0.1967 REMARK 3 4 4.3421 - 3.9456 0.95 3306 154 0.1703 0.2110 REMARK 3 5 3.9456 - 3.6631 0.95 3346 150 0.1850 0.2442 REMARK 3 6 3.6631 - 3.4473 0.96 3351 148 0.2044 0.2643 REMARK 3 7 3.4473 - 3.2747 0.95 3290 149 0.2127 0.2326 REMARK 3 8 3.2747 - 3.1323 0.95 3340 147 0.2295 0.2581 REMARK 3 9 3.1323 - 3.0117 0.89 3079 145 0.2476 0.3811 REMARK 3 10 3.0117 - 2.9078 0.89 3094 137 0.2635 0.3577 REMARK 3 11 2.9078 - 2.8170 0.89 3098 146 0.2657 0.3023 REMARK 3 12 2.8170 - 2.7365 0.87 2991 132 0.2631 0.3152 REMARK 3 13 2.7365 - 2.6644 0.84 2901 125 0.2805 0.3585 REMARK 3 14 2.6644 - 2.5995 0.77 2701 126 0.3053 0.3967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8671 REMARK 3 ANGLE : 1.241 11728 REMARK 3 CHIRALITY : 0.048 1305 REMARK 3 PLANARITY : 0.006 1515 REMARK 3 DIHEDRAL : 13.923 3153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 6224 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000210830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.599 REMARK 200 RESOLUTION RANGE LOW (A) : 39.623 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.4.0 REMARK 200 STARTING MODEL: 1XED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1M BISTRIS REMARK 280 PH 5.5, 31% POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 121.21700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 ILE A 334 REMARK 465 PRO A 335 REMARK 465 GLY A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 LEU A 430 REMARK 465 TRP A 431 REMARK 465 TRP A 550 REMARK 465 SER A 551 REMARK 465 HIS A 552 REMARK 465 PRO A 553 REMARK 465 GLN A 554 REMARK 465 PHE A 555 REMARK 465 GLU A 556 REMARK 465 LYS A 557 REMARK 465 LYS B 1 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 GLU B 259 REMARK 465 GLU B 331 REMARK 465 SER B 332 REMARK 465 THR B 333 REMARK 465 ILE B 334 REMARK 465 GLY B 427 REMARK 465 ASP B 428 REMARK 465 THR B 429 REMARK 465 LEU B 430 REMARK 465 TRP B 431 REMARK 465 TRP B 550 REMARK 465 SER B 551 REMARK 465 HIS B 552 REMARK 465 PRO B 553 REMARK 465 GLN B 554 REMARK 465 PHE B 555 REMARK 465 GLU B 556 REMARK 465 LYS B 557 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 459 O ASN A 514 1.52 REMARK 500 H GLU A 223 O HOH A 702 1.54 REMARK 500 OD1 ASP B 382 H GLU B 384 1.55 REMARK 500 HG1 THR B 459 O ASN B 514 1.58 REMARK 500 HH TYR B 122 O1 SO4 B 606 1.59 REMARK 500 ND2 ASN A 168 O5 NAG A 604 1.82 REMARK 500 ND2 ASN B 481 O5 NAG B 605 1.89 REMARK 500 ND2 ASN A 65 C2 NAG A 601 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -177.79 -65.46 REMARK 500 PRO A 26 47.29 -74.51 REMARK 500 ASN A 117 -175.63 73.33 REMARK 500 ARG A 232 13.82 59.31 REMARK 500 ARG A 278 26.73 -142.88 REMARK 500 SER A 347 -143.58 -119.90 REMARK 500 GLU A 359 35.43 -79.92 REMARK 500 THR A 425 -141.62 -138.50 REMARK 500 PRO A 467 -174.62 -62.62 REMARK 500 PRO A 495 178.06 -56.47 REMARK 500 ASP A 503 -63.85 -143.86 REMARK 500 SER A 506 -179.03 -63.97 REMARK 500 GLU A 545 -166.76 -115.19 REMARK 500 ARG A 547 -76.84 -80.69 REMARK 500 ASN B 16 -177.38 -62.24 REMARK 500 PRO B 26 47.71 -73.95 REMARK 500 LEU B 101 91.85 -69.92 REMARK 500 LEU B 126 137.59 -39.07 REMARK 500 ARG B 232 14.13 58.57 REMARK 500 ARG B 278 26.04 -140.48 REMARK 500 SER B 347 -145.85 -116.37 REMARK 500 ARG B 357 -33.85 -37.65 REMARK 500 GLU B 359 31.46 -77.13 REMARK 500 THR B 425 -137.71 -138.84 REMARK 500 PRO B 467 -177.24 -60.08 REMARK 500 PRO B 495 174.24 -54.06 REMARK 500 ASP B 503 -66.65 -145.77 REMARK 500 SER B 506 -178.81 -65.91 REMARK 500 GLU B 545 -166.09 -113.41 REMARK 500 GLU B 546 -21.44 -143.28 REMARK 500 ARG B 547 -75.20 -85.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F1S RELATED DB: PDB DBREF 5D4K A 1 547 UNP P01833 PIGR_HUMAN 19 565 DBREF 5D4K B 1 547 UNP P01833 PIGR_HUMAN 19 565 SEQADV 5D4K SER A 347 UNP P01833 GLY 365 VARIANT SEQADV 5D4K GLY A 548 UNP P01833 EXPRESSION TAG SEQADV 5D4K SER A 549 UNP P01833 EXPRESSION TAG SEQADV 5D4K TRP A 550 UNP P01833 EXPRESSION TAG SEQADV 5D4K SER A 551 UNP P01833 EXPRESSION TAG SEQADV 5D4K HIS A 552 UNP P01833 EXPRESSION TAG SEQADV 5D4K PRO A 553 UNP P01833 EXPRESSION TAG SEQADV 5D4K GLN A 554 UNP P01833 EXPRESSION TAG SEQADV 5D4K PHE A 555 UNP P01833 EXPRESSION TAG SEQADV 5D4K GLU A 556 UNP P01833 EXPRESSION TAG SEQADV 5D4K LYS A 557 UNP P01833 EXPRESSION TAG SEQADV 5D4K SER B 347 UNP P01833 GLY 365 VARIANT SEQADV 5D4K GLY B 548 UNP P01833 EXPRESSION TAG SEQADV 5D4K SER B 549 UNP P01833 EXPRESSION TAG SEQADV 5D4K TRP B 550 UNP P01833 EXPRESSION TAG SEQADV 5D4K SER B 551 UNP P01833 EXPRESSION TAG SEQADV 5D4K HIS B 552 UNP P01833 EXPRESSION TAG SEQADV 5D4K PRO B 553 UNP P01833 EXPRESSION TAG SEQADV 5D4K GLN B 554 UNP P01833 EXPRESSION TAG SEQADV 5D4K PHE B 555 UNP P01833 EXPRESSION TAG SEQADV 5D4K GLU B 556 UNP P01833 EXPRESSION TAG SEQADV 5D4K LYS B 557 UNP P01833 EXPRESSION TAG SEQRES 1 A 557 LYS SER PRO ILE PHE GLY PRO GLU GLU VAL ASN SER VAL SEQRES 2 A 557 GLU GLY ASN SER VAL SER ILE THR CYS TYR TYR PRO PRO SEQRES 3 A 557 THR SER VAL ASN ARG HIS THR ARG LYS TYR TRP CYS ARG SEQRES 4 A 557 GLN GLY ALA ARG GLY GLY CYS ILE THR LEU ILE SER SER SEQRES 5 A 557 GLU GLY TYR VAL SER SER LYS TYR ALA GLY ARG ALA ASN SEQRES 6 A 557 LEU THR ASN PHE PRO GLU ASN GLY THR PHE VAL VAL ASN SEQRES 7 A 557 ILE ALA GLN LEU SER GLN ASP ASP SER GLY ARG TYR LYS SEQRES 8 A 557 CYS GLY LEU GLY ILE ASN SER ARG GLY LEU SER PHE ASP SEQRES 9 A 557 VAL SER LEU GLU VAL SER GLN GLY PRO GLY LEU LEU ASN SEQRES 10 A 557 ASP THR LYS VAL TYR THR VAL ASP LEU GLY ARG THR VAL SEQRES 11 A 557 THR ILE ASN CYS PRO PHE LYS THR GLU ASN ALA GLN LYS SEQRES 12 A 557 ARG LYS SER LEU TYR LYS GLN ILE GLY LEU TYR PRO VAL SEQRES 13 A 557 LEU VAL ILE ASP SER SER GLY TYR VAL ASN PRO ASN TYR SEQRES 14 A 557 THR GLY ARG ILE ARG LEU ASP ILE GLN GLY THR GLY GLN SEQRES 15 A 557 LEU LEU PHE SER VAL VAL ILE ASN GLN LEU ARG LEU SER SEQRES 16 A 557 ASP ALA GLY GLN TYR LEU CYS GLN ALA GLY ASP ASP SER SEQRES 17 A 557 ASN SER ASN LYS LYS ASN ALA ASP LEU GLN VAL LEU LYS SEQRES 18 A 557 PRO GLU PRO GLU LEU VAL TYR GLU ASP LEU ARG GLY SER SEQRES 19 A 557 VAL THR PHE HIS CYS ALA LEU GLY PRO GLU VAL ALA ASN SEQRES 20 A 557 VAL ALA LYS PHE LEU CYS ARG GLN SER SER GLY GLU ASN SEQRES 21 A 557 CYS ASP VAL VAL VAL ASN THR LEU GLY LYS ARG ALA PRO SEQRES 22 A 557 ALA PHE GLU GLY ARG ILE LEU LEU ASN PRO GLN ASP LYS SEQRES 23 A 557 ASP GLY SER PHE SER VAL VAL ILE THR GLY LEU ARG LYS SEQRES 24 A 557 GLU ASP ALA GLY ARG TYR LEU CYS GLY ALA HIS SER ASP SEQRES 25 A 557 GLY GLN LEU GLN GLU GLY SER PRO ILE GLN ALA TRP GLN SEQRES 26 A 557 LEU PHE VAL ASN GLU GLU SER THR ILE PRO ARG SER PRO SEQRES 27 A 557 THR VAL VAL LYS GLY VAL ALA GLY SER SER VAL ALA VAL SEQRES 28 A 557 LEU CYS PRO TYR ASN ARG LYS GLU SER LYS SER ILE LYS SEQRES 29 A 557 TYR TRP CYS LEU TRP GLU GLY ALA GLN ASN GLY ARG CYS SEQRES 30 A 557 PRO LEU LEU VAL ASP SER GLU GLY TRP VAL LYS ALA GLN SEQRES 31 A 557 TYR GLU GLY ARG LEU SER LEU LEU GLU GLU PRO GLY ASN SEQRES 32 A 557 GLY THR PHE THR VAL ILE LEU ASN GLN LEU THR SER ARG SEQRES 33 A 557 ASP ALA GLY PHE TYR TRP CYS LEU THR ASN GLY ASP THR SEQRES 34 A 557 LEU TRP ARG THR THR VAL GLU ILE LYS ILE ILE GLU GLY SEQRES 35 A 557 GLU PRO ASN LEU LYS VAL PRO GLY ASN VAL THR ALA VAL SEQRES 36 A 557 LEU GLY GLU THR LEU LYS VAL PRO CYS HIS PHE PRO CYS SEQRES 37 A 557 LYS PHE SER SER TYR GLU LYS TYR TRP CYS LYS TRP ASN SEQRES 38 A 557 ASN THR GLY CYS GLN ALA LEU PRO SER GLN ASP GLU GLY SEQRES 39 A 557 PRO SER LYS ALA PHE VAL ASN CYS ASP GLU ASN SER ARG SEQRES 40 A 557 LEU VAL SER LEU THR LEU ASN LEU VAL THR ARG ALA ASP SEQRES 41 A 557 GLU GLY TRP TYR TRP CYS GLY VAL LYS GLN GLY HIS PHE SEQRES 42 A 557 TYR GLY GLU THR ALA ALA VAL TYR VAL ALA VAL GLU GLU SEQRES 43 A 557 ARG GLY SER TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 557 LYS SER PRO ILE PHE GLY PRO GLU GLU VAL ASN SER VAL SEQRES 2 B 557 GLU GLY ASN SER VAL SER ILE THR CYS TYR TYR PRO PRO SEQRES 3 B 557 THR SER VAL ASN ARG HIS THR ARG LYS TYR TRP CYS ARG SEQRES 4 B 557 GLN GLY ALA ARG GLY GLY CYS ILE THR LEU ILE SER SER SEQRES 5 B 557 GLU GLY TYR VAL SER SER LYS TYR ALA GLY ARG ALA ASN SEQRES 6 B 557 LEU THR ASN PHE PRO GLU ASN GLY THR PHE VAL VAL ASN SEQRES 7 B 557 ILE ALA GLN LEU SER GLN ASP ASP SER GLY ARG TYR LYS SEQRES 8 B 557 CYS GLY LEU GLY ILE ASN SER ARG GLY LEU SER PHE ASP SEQRES 9 B 557 VAL SER LEU GLU VAL SER GLN GLY PRO GLY LEU LEU ASN SEQRES 10 B 557 ASP THR LYS VAL TYR THR VAL ASP LEU GLY ARG THR VAL SEQRES 11 B 557 THR ILE ASN CYS PRO PHE LYS THR GLU ASN ALA GLN LYS SEQRES 12 B 557 ARG LYS SER LEU TYR LYS GLN ILE GLY LEU TYR PRO VAL SEQRES 13 B 557 LEU VAL ILE ASP SER SER GLY TYR VAL ASN PRO ASN TYR SEQRES 14 B 557 THR GLY ARG ILE ARG LEU ASP ILE GLN GLY THR GLY GLN SEQRES 15 B 557 LEU LEU PHE SER VAL VAL ILE ASN GLN LEU ARG LEU SER SEQRES 16 B 557 ASP ALA GLY GLN TYR LEU CYS GLN ALA GLY ASP ASP SER SEQRES 17 B 557 ASN SER ASN LYS LYS ASN ALA ASP LEU GLN VAL LEU LYS SEQRES 18 B 557 PRO GLU PRO GLU LEU VAL TYR GLU ASP LEU ARG GLY SER SEQRES 19 B 557 VAL THR PHE HIS CYS ALA LEU GLY PRO GLU VAL ALA ASN SEQRES 20 B 557 VAL ALA LYS PHE LEU CYS ARG GLN SER SER GLY GLU ASN SEQRES 21 B 557 CYS ASP VAL VAL VAL ASN THR LEU GLY LYS ARG ALA PRO SEQRES 22 B 557 ALA PHE GLU GLY ARG ILE LEU LEU ASN PRO GLN ASP LYS SEQRES 23 B 557 ASP GLY SER PHE SER VAL VAL ILE THR GLY LEU ARG LYS SEQRES 24 B 557 GLU ASP ALA GLY ARG TYR LEU CYS GLY ALA HIS SER ASP SEQRES 25 B 557 GLY GLN LEU GLN GLU GLY SER PRO ILE GLN ALA TRP GLN SEQRES 26 B 557 LEU PHE VAL ASN GLU GLU SER THR ILE PRO ARG SER PRO SEQRES 27 B 557 THR VAL VAL LYS GLY VAL ALA GLY SER SER VAL ALA VAL SEQRES 28 B 557 LEU CYS PRO TYR ASN ARG LYS GLU SER LYS SER ILE LYS SEQRES 29 B 557 TYR TRP CYS LEU TRP GLU GLY ALA GLN ASN GLY ARG CYS SEQRES 30 B 557 PRO LEU LEU VAL ASP SER GLU GLY TRP VAL LYS ALA GLN SEQRES 31 B 557 TYR GLU GLY ARG LEU SER LEU LEU GLU GLU PRO GLY ASN SEQRES 32 B 557 GLY THR PHE THR VAL ILE LEU ASN GLN LEU THR SER ARG SEQRES 33 B 557 ASP ALA GLY PHE TYR TRP CYS LEU THR ASN GLY ASP THR SEQRES 34 B 557 LEU TRP ARG THR THR VAL GLU ILE LYS ILE ILE GLU GLY SEQRES 35 B 557 GLU PRO ASN LEU LYS VAL PRO GLY ASN VAL THR ALA VAL SEQRES 36 B 557 LEU GLY GLU THR LEU LYS VAL PRO CYS HIS PHE PRO CYS SEQRES 37 B 557 LYS PHE SER SER TYR GLU LYS TYR TRP CYS LYS TRP ASN SEQRES 38 B 557 ASN THR GLY CYS GLN ALA LEU PRO SER GLN ASP GLU GLY SEQRES 39 B 557 PRO SER LYS ALA PHE VAL ASN CYS ASP GLU ASN SER ARG SEQRES 40 B 557 LEU VAL SER LEU THR LEU ASN LEU VAL THR ARG ALA ASP SEQRES 41 B 557 GLU GLY TRP TYR TRP CYS GLY VAL LYS GLN GLY HIS PHE SEQRES 42 B 557 TYR GLY GLU THR ALA ALA VAL TYR VAL ALA VAL GLU GLU SEQRES 43 B 557 ARG GLY SER TRP SER HIS PRO GLN PHE GLU LYS HET NAG C 1 26 HET FUC C 2 21 HET NAG D 1 26 HET FUC D 2 21 HET NAG A 601 27 HET NAG A 604 27 HET NAG A 605 27 HET SO4 A 606 5 HET SO4 A 607 5 HET NAG B 601 27 HET NAG B 604 27 HET NAG B 605 27 HET SO4 B 606 5 HET SO4 B 607 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 8 SO4 4(O4 S 2-) FORMUL 15 HOH *58(H2 O) HELIX 1 AA1 SER A 28 HIS A 32 5 5 HELIX 2 AA2 ALA A 42 GLY A 44 5 3 HELIX 3 AA3 SER A 83 SER A 87 5 5 HELIX 4 AA4 LYS A 137 ALA A 141 5 5 HELIX 5 AA5 ARG A 193 ALA A 197 5 5 HELIX 6 AA6 ALA A 272 GLU A 276 5 5 HELIX 7 AA7 ARG A 298 ALA A 302 5 5 HELIX 8 AA8 ASN A 356 SER A 360 5 5 HELIX 9 AA9 LYS A 388 GLU A 392 5 5 HELIX 10 AB1 THR A 414 ALA A 418 5 5 HELIX 11 AB2 THR A 517 GLU A 521 5 5 HELIX 12 AB3 SER B 28 HIS B 32 5 5 HELIX 13 AB4 ALA B 42 GLY B 44 5 3 HELIX 14 AB5 SER B 83 SER B 87 5 5 HELIX 15 AB6 LYS B 137 ALA B 141 5 5 HELIX 16 AB7 ARG B 193 ALA B 197 5 5 HELIX 17 AB8 ALA B 272 GLU B 276 5 5 HELIX 18 AB9 ARG B 298 ALA B 302 5 5 HELIX 19 AC1 LYS B 358 SER B 362 5 5 HELIX 20 AC2 LYS B 388 GLU B 392 5 5 HELIX 21 AC3 THR B 414 ALA B 418 5 5 HELIX 22 AC4 THR B 517 GLU B 521 5 5 SHEET 1 AA1 5 GLU A 9 VAL A 13 0 SHEET 2 AA1 5 SER A 102 SER A 110 1 O GLU A 108 N VAL A 10 SHEET 3 AA1 5 GLY A 88 LEU A 94 -1 N TYR A 90 O VAL A 105 SHEET 4 AA1 5 LYS A 35 GLN A 40 -1 N CYS A 38 O LYS A 91 SHEET 5 AA1 5 CYS A 46 SER A 51 -1 O LEU A 49 N TRP A 37 SHEET 1 AA2 3 VAL A 18 TYR A 23 0 SHEET 2 AA2 3 THR A 74 ILE A 79 -1 O PHE A 75 N CYS A 22 SHEET 3 AA2 3 ALA A 64 PHE A 69 -1 N PHE A 69 O THR A 74 SHEET 1 AA3 5 THR A 119 ASP A 125 0 SHEET 2 AA3 5 ASN A 211 LEU A 220 1 O ASP A 216 N TYR A 122 SHEET 3 AA3 5 GLY A 198 ALA A 204 -1 N TYR A 200 O ALA A 215 SHEET 4 AA3 5 LYS A 145 GLN A 150 -1 N GLN A 150 O GLN A 199 SHEET 5 AA3 5 PRO A 155 ASP A 160 -1 O VAL A 158 N LEU A 147 SHEET 1 AA4 3 VAL A 130 PRO A 135 0 SHEET 2 AA4 3 LEU A 184 ILE A 189 -1 O PHE A 185 N CYS A 134 SHEET 3 AA4 3 ILE A 173 ILE A 177 -1 N ARG A 174 O VAL A 188 SHEET 1 AA5 5 GLU A 225 ASP A 230 0 SHEET 2 AA5 5 ILE A 321 ASN A 329 1 O GLN A 325 N GLU A 225 SHEET 3 AA5 5 ARG A 304 ALA A 309 -1 N TYR A 305 O TRP A 324 SHEET 4 AA5 5 LYS A 250 GLN A 255 -1 N GLN A 255 O ARG A 304 SHEET 5 AA5 5 CYS A 261 ASN A 266 -1 O VAL A 264 N LEU A 252 SHEET 1 AA6 3 VAL A 235 CYS A 239 0 SHEET 2 AA6 3 PHE A 290 ILE A 294 -1 O ILE A 294 N VAL A 235 SHEET 3 AA6 3 ILE A 279 LEU A 281 -1 N LEU A 280 O VAL A 293 SHEET 1 AA7 5 THR A 339 GLY A 343 0 SHEET 2 AA7 5 THR A 433 ILE A 439 1 O GLU A 436 N VAL A 341 SHEET 3 AA7 5 GLY A 419 LEU A 424 -1 N TYR A 421 O VAL A 435 SHEET 4 AA7 5 TYR A 365 LEU A 368 -1 N CYS A 367 O TRP A 422 SHEET 5 AA7 5 LEU A 379 ASP A 382 -1 O VAL A 381 N TRP A 366 SHEET 1 AA8 3 SER A 348 PRO A 354 0 SHEET 2 AA8 3 THR A 405 ASN A 411 -1 O PHE A 406 N CYS A 353 SHEET 3 AA8 3 LEU A 395 PRO A 401 -1 N LEU A 398 O THR A 407 SHEET 1 AA9 5 ASN A 451 VAL A 455 0 SHEET 2 AA9 5 PHE A 533 GLU A 545 1 O ALA A 543 N ALA A 454 SHEET 3 AA9 5 GLY A 522 GLN A 530 -1 N GLY A 522 O VAL A 542 SHEET 4 AA9 5 GLU A 474 LYS A 479 -1 N GLU A 474 O LYS A 529 SHEET 5 AA9 5 GLN A 486 ALA A 487 -1 O GLN A 486 N LYS A 479 SHEET 1 AB1 3 LEU A 460 PHE A 466 0 SHEET 2 AB1 3 ARG A 507 LEU A 513 -1 O LEU A 513 N LEU A 460 SHEET 3 AB1 3 SER A 490 ASP A 492 -1 N GLN A 491 O SER A 510 SHEET 1 AB2 5 GLU B 9 VAL B 13 0 SHEET 2 AB2 5 SER B 102 SER B 110 1 O SER B 110 N SER B 12 SHEET 3 AB2 5 GLY B 88 LEU B 94 -1 N TYR B 90 O VAL B 105 SHEET 4 AB2 5 LYS B 35 GLN B 40 -1 N CYS B 38 O LYS B 91 SHEET 5 AB2 5 CYS B 46 SER B 51 -1 O LEU B 49 N TRP B 37 SHEET 1 AB3 3 VAL B 18 TYR B 23 0 SHEET 2 AB3 3 THR B 74 ILE B 79 -1 O PHE B 75 N CYS B 22 SHEET 3 AB3 3 ALA B 64 PHE B 69 -1 N ASN B 65 O ASN B 78 SHEET 1 AB4 5 THR B 119 ASP B 125 0 SHEET 2 AB4 5 ASN B 211 LEU B 220 1 O ASP B 216 N LYS B 120 SHEET 3 AB4 5 GLY B 198 ALA B 204 -1 N TYR B 200 O ALA B 215 SHEET 4 AB4 5 LYS B 145 ILE B 151 -1 N TYR B 148 O LEU B 201 SHEET 5 AB4 5 TYR B 154 ASP B 160 -1 O VAL B 156 N LYS B 149 SHEET 1 AB5 3 VAL B 130 PRO B 135 0 SHEET 2 AB5 3 LEU B 184 ILE B 189 -1 O PHE B 185 N CYS B 134 SHEET 3 AB5 3 ILE B 173 ILE B 177 -1 N ARG B 174 O VAL B 188 SHEET 1 AB6 5 GLU B 225 ASP B 230 0 SHEET 2 AB6 5 ILE B 321 ASN B 329 1 O ASN B 329 N GLU B 229 SHEET 3 AB6 5 ARG B 304 ALA B 309 -1 N TYR B 305 O TRP B 324 SHEET 4 AB6 5 LYS B 250 ARG B 254 -1 N CYS B 253 O LEU B 306 SHEET 5 AB6 5 ASP B 262 ASN B 266 -1 O VAL B 265 N LEU B 252 SHEET 1 AB7 3 VAL B 235 CYS B 239 0 SHEET 2 AB7 3 PHE B 290 ILE B 294 -1 O VAL B 292 N PHE B 237 SHEET 3 AB7 3 ILE B 279 LEU B 281 -1 N LEU B 280 O VAL B 293 SHEET 1 AB8 5 THR B 339 GLY B 343 0 SHEET 2 AB8 5 THR B 433 ILE B 439 1 O LYS B 438 N VAL B 341 SHEET 3 AB8 5 GLY B 419 LEU B 424 -1 N GLY B 419 O ILE B 437 SHEET 4 AB8 5 TYR B 365 LEU B 368 -1 N CYS B 367 O TRP B 422 SHEET 5 AB8 5 LEU B 379 ASP B 382 -1 O VAL B 381 N TRP B 366 SHEET 1 AB9 3 SER B 348 PRO B 354 0 SHEET 2 AB9 3 THR B 405 ASN B 411 -1 O PHE B 406 N CYS B 353 SHEET 3 AB9 3 LEU B 395 PRO B 401 -1 N LEU B 398 O THR B 407 SHEET 1 AC1 5 ASN B 451 VAL B 455 0 SHEET 2 AC1 5 PHE B 533 GLU B 545 1 O ALA B 543 N ALA B 454 SHEET 3 AC1 5 GLY B 522 GLN B 530 -1 N GLN B 530 O PHE B 533 SHEET 4 AC1 5 GLU B 474 LYS B 479 -1 N CYS B 478 O TRP B 525 SHEET 5 AC1 5 GLN B 486 ALA B 487 -1 O GLN B 486 N LYS B 479 SHEET 1 AC2 3 LEU B 460 PHE B 466 0 SHEET 2 AC2 3 ARG B 507 LEU B 513 -1 O VAL B 509 N CYS B 464 SHEET 3 AC2 3 SER B 490 ASP B 492 -1 N GLN B 491 O SER B 510 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 38 CYS A 46 1555 1555 2.06 SSBOND 3 CYS A 134 CYS A 202 1555 1555 2.04 SSBOND 4 CYS A 239 CYS A 307 1555 1555 2.04 SSBOND 5 CYS A 253 CYS A 261 1555 1555 2.06 SSBOND 6 CYS A 353 CYS A 423 1555 1555 2.04 SSBOND 7 CYS A 367 CYS A 377 1555 1555 2.05 SSBOND 8 CYS A 464 CYS A 526 1555 1555 2.03 SSBOND 9 CYS A 468 CYS A 502 1555 1555 2.04 SSBOND 10 CYS A 478 CYS A 485 1555 1555 2.04 SSBOND 11 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 12 CYS B 38 CYS B 46 1555 1555 2.05 SSBOND 13 CYS B 134 CYS B 202 1555 1555 2.07 SSBOND 14 CYS B 239 CYS B 307 1555 1555 2.07 SSBOND 15 CYS B 253 CYS B 261 1555 1555 2.04 SSBOND 16 CYS B 353 CYS B 423 1555 1555 2.04 SSBOND 17 CYS B 367 CYS B 377 1555 1555 2.04 SSBOND 18 CYS B 464 CYS B 526 1555 1555 2.04 SSBOND 19 CYS B 468 CYS B 502 1555 1555 2.04 SSBOND 20 CYS B 478 CYS B 485 1555 1555 2.04 LINK ND2 ASN A 65 C1 NAG A 601 1555 1555 1.56 LINK ND2 ASN A 72 C1 NAG C 1 1555 1555 1.55 LINK ND2 ASN A 168 C1 NAG A 604 1555 1555 1.58 LINK ND2 ASN A 481 C1 NAG A 605 1555 1555 1.53 LINK ND2 ASN B 65 C1 NAG B 601 1555 1555 1.53 LINK ND2 ASN B 72 C1 NAG D 1 1555 1555 1.49 LINK ND2 ASN B 168 C1 NAG B 604 1555 1555 1.48 LINK ND2 ASN B 481 C1 NAG B 605 1555 1555 1.58 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.49 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.49 CISPEP 1 GLU A 400 PRO A 401 0 5.17 CISPEP 2 GLU B 400 PRO B 401 0 8.22 CRYST1 61.258 242.434 63.046 90.00 114.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016324 0.000000 0.007575 0.00000 SCALE2 0.000000 0.004125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017486 0.00000