data_5D4O # _entry.id 5D4O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5D4O pdb_00005d4o 10.2210/pdb5d4o/pdb WWPDB D_1000212433 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5D4L unspecified PDB . 5D4M unspecified PDB . 5D4N unspecified PDB . 5D4P unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5D4O _pdbx_database_status.recvd_initial_deposition_date 2015-08-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wheatley, N.M.' 1 'Ngo, J.' 2 'Cascio, D.' 3 'Sawaya, M.R.' 4 'Yeates, T.O.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 428 _citation.language ? _citation.page_first 4013 _citation.page_last 4030 _citation.title 'A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2016.07.015 _citation.pdbx_database_id_PubMed 27464895 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wheatley, N.M.' 1 ? primary 'Eden, K.D.' 2 ? primary 'Ngo, J.' 3 ? primary 'Rosinski, J.S.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Cascio, D.' 6 ? primary 'Collazo, M.' 7 ? primary 'Hoveida, H.' 8 ? primary 'Hubbell, W.L.' 9 ? primary 'Yeates, T.O.' 10 ? # _cell.length_a 51.440 _cell.length_b 75.450 _cell.length_c 80.020 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5D4O _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 5D4O _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nitrogen regulatory protein P-II' 11950.863 3 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'BICARBONATE ION' 61.017 2 ? ? ? ? 4 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 5 water nat water 18.015 100 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNAIKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEGHLMFNEDDALIMIIAAVPEELVGPLLE GFQPFFEAHSGVVFVHDIQVGRPIKFRN ; _entity_poly.pdbx_seq_one_letter_code_can ;MNAIKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEGHLMFNEDDALIMIIAAVPEELVGPLLE GFQPFFEAHSGVVFVHDIQVGRPIKFRN ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ALA n 1 4 ILE n 1 5 LYS n 1 6 LEU n 1 7 TYR n 1 8 PRO n 1 9 LEU n 1 10 LYS n 1 11 LYS n 1 12 LEU n 1 13 GLU n 1 14 ILE n 1 15 ILE n 1 16 LEU n 1 17 GLU n 1 18 GLY n 1 19 ALA n 1 20 HIS n 1 21 LYS n 1 22 GLU n 1 23 PHE n 1 24 ALA n 1 25 THR n 1 26 ASP n 1 27 LEU n 1 28 LEU n 1 29 ASP n 1 30 ARG n 1 31 ALA n 1 32 GLY n 1 33 VAL n 1 34 LYS n 1 35 GLY n 1 36 TYR n 1 37 THR n 1 38 ILE n 1 39 VAL n 1 40 GLY n 1 41 ASN n 1 42 LEU n 1 43 SER n 1 44 GLY n 1 45 LYS n 1 46 GLY n 1 47 SER n 1 48 HIS n 1 49 GLY n 1 50 MET n 1 51 TYR n 1 52 GLU n 1 53 GLY n 1 54 HIS n 1 55 LEU n 1 56 MET n 1 57 PHE n 1 58 ASN n 1 59 GLU n 1 60 ASP n 1 61 ASP n 1 62 ALA n 1 63 LEU n 1 64 ILE n 1 65 MET n 1 66 ILE n 1 67 ILE n 1 68 ALA n 1 69 ALA n 1 70 VAL n 1 71 PRO n 1 72 GLU n 1 73 GLU n 1 74 LEU n 1 75 VAL n 1 76 GLY n 1 77 PRO n 1 78 LEU n 1 79 LEU n 1 80 GLU n 1 81 GLY n 1 82 PHE n 1 83 GLN n 1 84 PRO n 1 85 PHE n 1 86 PHE n 1 87 GLU n 1 88 ALA n 1 89 HIS n 1 90 SER n 1 91 GLY n 1 92 VAL n 1 93 VAL n 1 94 PHE n 1 95 VAL n 1 96 HIS n 1 97 ASP n 1 98 ILE n 1 99 GLN n 1 100 VAL n 1 101 GLY n 1 102 ARG n 1 103 PRO n 1 104 ILE n 1 105 LYS n 1 106 PHE n 1 107 ARG n 1 108 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 108 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Tint_0114 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thiomonas intermedia (strain K12)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 75379 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.db_code D5X329_THIK1 _struct_ref.db_name UNP _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession D5X329 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ;MNAIKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEGHLMFNEDDALIMIIAAVPEELVGPLLE GFQPFFEAHSGVVFVHDIQVGRPIKFRN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5D4O B 1 ? 108 ? D5X329 1 ? 108 ? 1 108 2 1 5D4O A 1 ? 108 ? D5X329 1 ? 108 ? 1 108 3 1 5D4O C 1 ? 108 ? D5X329 1 ? 108 ? 1 108 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BCT non-polymer . 'BICARBONATE ION' ? 'C H O3 -1' 61.017 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5D4O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.15 M KBr, 30% (w/v) PEG MME 2000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS HTC' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.d_resolution_high 1.800 _reflns.pdbx_number_measured_all 191688 _reflns.number_obs 29590 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_netI_over_sigmaI 19.240 _reflns.pdbx_chi_squared 1.033 _reflns.percent_possible_obs 99.400 _reflns.Rmerge_F_obs 0.999 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.055 _reflns.B_iso_Wilson_estimate 30.420 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5D4O _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.800 1.840 11606 ? 2037 0 0.563 2.740 ? ? ? ? ? 2164 ? ? 0.840 ? ? 94.100 0.618 ? ? 1 2 1.840 1.890 14329 ? 2108 0 0.414 4.300 ? ? ? ? ? 2110 ? ? 0.928 ? ? 99.900 0.449 ? ? 1 3 1.890 1.950 13756 ? 2035 0 0.333 5.420 ? ? ? ? ? 2040 ? ? 0.956 ? ? 99.800 0.361 ? ? 1 4 1.950 2.010 13409 ? 2006 0 0.246 7.150 ? ? ? ? ? 2007 ? ? 0.975 ? ? 100.000 0.267 ? ? 1 5 2.010 2.070 13044 ? 1960 0 0.205 8.550 ? ? ? ? ? 1962 ? ? 0.982 ? ? 99.900 0.223 ? ? 1 6 2.070 2.150 11893 ? 1851 0 0.166 10.230 ? ? ? ? ? 1854 ? ? 0.984 ? ? 99.800 0.181 ? ? 1 7 2.150 2.230 11321 ? 1832 0 0.133 12.240 ? ? ? ? ? 1834 ? ? 0.990 ? ? 99.900 0.145 ? ? 1 8 2.230 2.320 12001 ? 1735 0 0.120 14.800 ? ? ? ? ? 1739 ? ? 0.994 ? ? 99.800 0.130 ? ? 1 9 2.320 2.420 11531 ? 1687 0 0.099 17.000 ? ? ? ? ? 1688 ? ? 0.994 ? ? 99.900 0.107 ? ? 1 10 2.420 2.540 10864 ? 1607 0 0.085 19.490 ? ? ? ? ? 1609 ? ? 0.996 ? ? 99.900 0.093 ? ? 1 11 2.540 2.680 10050 ? 1527 0 0.076 21.540 ? ? ? ? ? 1532 ? ? 0.997 ? ? 99.700 0.083 ? ? 1 12 2.680 2.840 8783 ? 1458 0 0.061 25.320 ? ? ? ? ? 1464 ? ? 0.997 ? ? 99.600 0.067 ? ? 1 13 2.840 3.030 9378 ? 1386 0 0.054 30.850 ? ? ? ? ? 1389 ? ? 0.997 ? ? 99.800 0.059 ? ? 1 14 3.030 3.280 8488 ? 1276 0 0.045 36.240 ? ? ? ? ? 1282 ? ? 0.998 ? ? 99.500 0.049 ? ? 1 15 3.280 3.590 7525 ? 1174 0 0.038 40.930 ? ? ? ? ? 1179 ? ? 0.999 ? ? 99.600 0.041 ? ? 1 16 3.590 4.010 6473 ? 1083 0 0.036 42.570 ? ? ? ? ? 1088 ? ? 0.999 ? ? 99.500 0.039 ? ? 1 17 4.010 4.630 5797 ? 956 0 0.031 46.090 ? ? ? ? ? 962 ? ? 0.999 ? ? 99.400 0.033 ? ? 1 18 4.630 5.680 5298 ? 833 0 0.029 48.170 ? ? ? ? ? 833 ? ? 0.999 ? ? 100.000 0.032 ? ? 1 19 5.680 8.030 3832 ? 647 0 0.029 43.850 ? ? ? ? ? 653 ? ? 0.999 ? ? 99.100 0.032 ? ? 1 20 8.030 ? 2310 ? 392 0 0.024 50.920 ? ? ? ? ? 393 ? ? 0.999 ? ? 99.700 0.027 ? ? # _refine.entry_id 5D4O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 54.9000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7400 _refine.ls_number_reflns_obs 29486 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2072 _refine.ls_R_factor_R_work 0.2059 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2319 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1503 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.6900 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.6196 _refine.aniso_B[2][2] 0.3755 _refine.aniso_B[3][3] 2.2441 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9467 _refine.correlation_coeff_Fo_to_Fc_free 0.9328 _refine.overall_SU_R_Cruickshank_DPI 0.1310 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1210 _refine.pdbx_overall_SU_R_Blow_DPI 0.1320 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1200 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 5D4L _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 117.690 _refine.B_iso_min 17.310 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 5D4O _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.244 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 54.9000 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 2477 _refine_hist.pdbx_number_residues_total 300 _refine_hist.pdbx_B_iso_mean_ligand 25.17 _refine_hist.pdbx_B_iso_mean_solvent 37.06 _refine_hist.pdbx_number_atoms_protein 2293 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 851 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 49 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 388 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2444 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 305 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2735 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2444 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 3328 1.100 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.570 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 17.550 ? ? ? # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8600 _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.percent_reflns_obs 99.7400 _refine_ls_shell.number_reflns_R_work 2731 _refine_ls_shell.R_factor_all 0.2251 _refine_ls_shell.R_factor_R_work 0.2244 _refine_ls_shell.R_factor_R_free 0.2389 _refine_ls_shell.percent_reflns_R_free 4.6100 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2863 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5D4O _struct.title 'Structure of CPII, a nitrogen regulatory PII-like protein from Thiomonas intermedia K12, bound to ADP, AMP and bicarbonate.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5D4O _struct_keywords.text ;carbon regulatory PII protein, CPII, nitrogen regulatory PII protein, nucleotide binding, ADP hydrolysis, bicarbonate binding, acetate binding, SIGNALING PROTEIN ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 20 ? GLY A 32 ? HIS A 20 GLY A 32 1 ? 13 HELX_P HELX_P2 AA2 GLU A 52 ? MET A 56 ? GLU A 52 MET A 56 5 ? 5 HELX_P HELX_P3 AA3 ASN A 58 ? ASP A 61 ? ASN A 58 ASP A 61 5 ? 4 HELX_P HELX_P4 AA4 PRO A 71 ? HIS A 89 ? PRO A 71 HIS A 89 1 ? 19 HELX_P HELX_P5 AA5 ARG A 102 ? PHE A 106 ? ARG A 102 PHE A 106 5 ? 5 HELX_P HELX_P6 AA6 HIS B 20 ? GLY B 32 ? HIS B 20 GLY B 32 1 ? 13 HELX_P HELX_P7 AA7 PRO B 71 ? GLU B 73 ? PRO B 71 GLU B 73 5 ? 3 HELX_P HELX_P8 AA8 LEU B 74 ? HIS B 89 ? LEU B 74 HIS B 89 1 ? 16 HELX_P HELX_P9 AA9 HIS C 20 ? ALA C 31 ? HIS C 20 ALA C 31 1 ? 12 HELX_P HELX_P10 AB1 PRO C 71 ? GLU C 73 ? PRO C 71 GLU C 73 5 ? 3 HELX_P HELX_P11 AB2 LEU C 74 ? HIS C 89 ? LEU C 74 HIS C 89 1 ? 16 HELX_P HELX_P12 AB3 ARG C 102 ? PHE C 106 ? ARG C 102 PHE C 106 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 10 ? AA2 ? 11 ? AA3 ? 10 ? AA4 ? 4 ? AA5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA2 8 9 ? anti-parallel AA2 9 10 ? anti-parallel AA2 10 11 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA3 8 9 ? anti-parallel AA3 9 10 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 49 ? TYR A 51 ? GLY A 49 TYR A 51 AA1 2 TYR A 36 ? GLY A 46 ? TYR A 36 GLY A 46 AA1 3 LEU A 63 ? VAL A 70 ? LEU A 63 VAL A 70 AA1 4 TYR A 7 ? GLU A 17 ? TYR A 7 GLU A 17 AA1 5 VAL A 92 ? VAL A 100 ? VAL A 92 VAL A 100 AA1 6 VAL B 92 ? GLY B 101 ? VAL B 92 GLY B 101 AA1 7 LEU B 6 ? GLU B 17 ? LEU B 6 GLU B 17 AA1 8 LEU B 63 ? VAL B 70 ? LEU B 63 VAL B 70 AA1 9 GLY B 35 ? GLY B 46 ? GLY B 35 GLY B 46 AA1 10 GLY B 49 ? TYR B 51 ? GLY B 49 TYR B 51 AA2 1 GLY A 49 ? TYR A 51 ? GLY A 49 TYR A 51 AA2 2 TYR A 36 ? GLY A 46 ? TYR A 36 GLY A 46 AA2 3 LEU A 63 ? VAL A 70 ? LEU A 63 VAL A 70 AA2 4 TYR A 7 ? GLU A 17 ? TYR A 7 GLU A 17 AA2 5 VAL A 92 ? VAL A 100 ? VAL A 92 VAL A 100 AA2 6 VAL B 92 ? GLY B 101 ? VAL B 92 GLY B 101 AA2 7 VAL C 92 ? VAL C 100 ? VAL C 92 VAL C 100 AA2 8 TYR C 7 ? GLU C 17 ? TYR C 7 GLU C 17 AA2 9 LEU C 63 ? VAL C 70 ? LEU C 63 VAL C 70 AA2 10 TYR C 36 ? SER C 47 ? TYR C 36 SER C 47 AA2 11 MET C 56 ? PHE C 57 ? MET C 56 PHE C 57 AA3 1 GLY A 49 ? TYR A 51 ? GLY A 49 TYR A 51 AA3 2 TYR A 36 ? GLY A 46 ? TYR A 36 GLY A 46 AA3 3 LEU A 63 ? VAL A 70 ? LEU A 63 VAL A 70 AA3 4 TYR A 7 ? GLU A 17 ? TYR A 7 GLU A 17 AA3 5 VAL A 92 ? VAL A 100 ? VAL A 92 VAL A 100 AA3 6 VAL C 92 ? VAL C 100 ? VAL C 92 VAL C 100 AA3 7 TYR C 7 ? GLU C 17 ? TYR C 7 GLU C 17 AA3 8 LEU C 63 ? VAL C 70 ? LEU C 63 VAL C 70 AA3 9 TYR C 36 ? SER C 47 ? TYR C 36 SER C 47 AA3 10 MET C 56 ? PHE C 57 ? MET C 56 PHE C 57 AA4 1 GLY A 49 ? TYR A 51 ? GLY A 49 TYR A 51 AA4 2 TYR A 36 ? GLY A 46 ? TYR A 36 GLY A 46 AA4 3 GLY B 35 ? GLY B 46 ? GLY B 35 GLY B 46 AA4 4 GLY B 49 ? TYR B 51 ? GLY B 49 TYR B 51 AA5 1 GLY A 49 ? TYR A 51 ? GLY A 49 TYR A 51 AA5 2 TYR A 36 ? GLY A 46 ? TYR A 36 GLY A 46 AA5 3 TYR C 36 ? SER C 47 ? TYR C 36 SER C 47 AA5 4 MET C 56 ? PHE C 57 ? MET C 56 PHE C 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 51 ? O TYR A 51 N GLY A 44 ? N GLY A 44 AA1 2 3 N THR A 37 ? N THR A 37 O ILE A 67 ? O ILE A 67 AA1 3 4 O ILE A 66 ? O ILE A 66 N ILE A 14 ? N ILE A 14 AA1 4 5 N ILE A 15 ? N ILE A 15 O VAL A 92 ? O VAL A 92 AA1 5 6 N GLN A 99 ? N GLN A 99 O VAL B 95 ? O VAL B 95 AA1 6 7 O VAL B 100 ? O VAL B 100 N TYR B 7 ? N TYR B 7 AA1 7 8 N LYS B 10 ? N LYS B 10 O VAL B 70 ? O VAL B 70 AA1 8 9 O ILE B 67 ? O ILE B 67 N THR B 37 ? N THR B 37 AA1 9 10 N GLY B 46 ? N GLY B 46 O GLY B 49 ? O GLY B 49 AA2 1 2 O TYR A 51 ? O TYR A 51 N GLY A 44 ? N GLY A 44 AA2 2 3 N THR A 37 ? N THR A 37 O ILE A 67 ? O ILE A 67 AA2 3 4 O ILE A 66 ? O ILE A 66 N ILE A 14 ? N ILE A 14 AA2 4 5 N ILE A 15 ? N ILE A 15 O VAL A 92 ? O VAL A 92 AA2 5 6 N GLN A 99 ? N GLN A 99 O VAL B 95 ? O VAL B 95 AA2 6 7 N GLN B 99 ? N GLN B 99 O VAL C 95 ? O VAL C 95 AA2 7 8 O HIS C 96 ? O HIS C 96 N LYS C 11 ? N LYS C 11 AA2 8 9 N LEU C 12 ? N LEU C 12 O ALA C 68 ? O ALA C 68 AA2 9 10 O ILE C 67 ? O ILE C 67 N THR C 37 ? N THR C 37 AA2 10 11 N GLY C 46 ? N GLY C 46 O PHE C 57 ? O PHE C 57 AA3 1 2 O TYR A 51 ? O TYR A 51 N GLY A 44 ? N GLY A 44 AA3 2 3 N THR A 37 ? N THR A 37 O ILE A 67 ? O ILE A 67 AA3 3 4 O ILE A 66 ? O ILE A 66 N ILE A 14 ? N ILE A 14 AA3 4 5 N ILE A 15 ? N ILE A 15 O VAL A 92 ? O VAL A 92 AA3 5 6 N VAL A 95 ? N VAL A 95 O GLN C 99 ? O GLN C 99 AA3 6 7 O HIS C 96 ? O HIS C 96 N LYS C 11 ? N LYS C 11 AA3 7 8 N LEU C 12 ? N LEU C 12 O ALA C 68 ? O ALA C 68 AA3 8 9 O ILE C 67 ? O ILE C 67 N THR C 37 ? N THR C 37 AA3 9 10 N GLY C 46 ? N GLY C 46 O PHE C 57 ? O PHE C 57 AA4 1 2 O TYR A 51 ? O TYR A 51 N GLY A 44 ? N GLY A 44 AA4 2 3 N ILE A 38 ? N ILE A 38 O SER B 43 ? O SER B 43 AA4 3 4 N GLY B 46 ? N GLY B 46 O GLY B 49 ? O GLY B 49 AA5 1 2 O TYR A 51 ? O TYR A 51 N GLY A 44 ? N GLY A 44 AA5 2 3 N SER A 43 ? N SER A 43 O ILE C 38 ? O ILE C 38 AA5 3 4 N GLY C 46 ? N GLY C 46 O PHE C 57 ? O PHE C 57 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 201 ? 21 'binding site for residue ADP A 201' AC2 Software A BCT 202 ? 5 'binding site for residue BCT A 202' AC3 Software A AMP 203 ? 17 'binding site for residue AMP A 203' AC4 Software C BCT 201 ? 5 'binding site for residue BCT C 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 GLY A 44 ? GLY A 44 . ? 1_555 ? 2 AC1 21 LYS A 45 ? LYS A 45 . ? 1_555 ? 3 AC1 21 GLY A 46 ? GLY A 46 . ? 1_555 ? 4 AC1 21 SER A 47 ? SER A 47 . ? 1_555 ? 5 AC1 21 HIS A 48 ? HIS A 48 . ? 1_555 ? 6 AC1 21 GLY A 49 ? GLY A 49 . ? 1_555 ? 7 AC1 21 TYR A 51 ? TYR A 51 . ? 1_555 ? 8 AC1 21 LEU A 63 ? LEU A 63 . ? 1_555 ? 9 AC1 21 SER A 90 ? SER A 90 . ? 1_555 ? 10 AC1 21 GLY A 91 ? GLY A 91 . ? 1_555 ? 11 AC1 21 VAL A 92 ? VAL A 92 . ? 1_555 ? 12 AC1 21 PHE A 94 ? PHE A 94 . ? 1_555 ? 13 AC1 21 HOH H . ? HOH A 332 . ? 1_555 ? 14 AC1 21 GLY C 35 ? GLY C 35 . ? 1_555 ? 15 AC1 21 TYR C 36 ? TYR C 36 . ? 1_555 ? 16 AC1 21 THR C 37 ? THR C 37 . ? 1_555 ? 17 AC1 21 ILE C 67 ? ILE C 67 . ? 1_555 ? 18 AC1 21 ALA C 68 ? ALA C 68 . ? 1_555 ? 19 AC1 21 ALA C 69 ? ALA C 69 . ? 1_555 ? 20 AC1 21 LYS C 105 ? LYS C 105 . ? 1_555 ? 21 AC1 21 PHE C 106 ? PHE C 106 . ? 1_555 ? 22 AC2 5 VAL A 100 ? VAL A 100 . ? 1_555 ? 23 AC2 5 GLY A 101 ? GLY A 101 . ? 1_555 ? 24 AC2 5 ARG A 102 ? ARG A 102 . ? 1_555 ? 25 AC2 5 VAL B 92 ? VAL B 92 . ? 1_555 ? 26 AC2 5 VAL B 93 ? VAL B 93 . ? 1_555 ? 27 AC3 17 GLY A 35 ? GLY A 35 . ? 1_555 ? 28 AC3 17 TYR A 36 ? TYR A 36 . ? 1_555 ? 29 AC3 17 THR A 37 ? THR A 37 . ? 1_555 ? 30 AC3 17 ILE A 67 ? ILE A 67 . ? 1_555 ? 31 AC3 17 ALA A 69 ? ALA A 69 . ? 1_555 ? 32 AC3 17 LYS A 105 ? LYS A 105 . ? 1_555 ? 33 AC3 17 PHE A 106 ? PHE A 106 . ? 1_555 ? 34 AC3 17 GLY B 44 ? GLY B 44 . ? 1_555 ? 35 AC3 17 LYS B 45 ? LYS B 45 . ? 1_555 ? 36 AC3 17 GLY B 46 ? GLY B 46 . ? 1_555 ? 37 AC3 17 SER B 47 ? SER B 47 . ? 1_555 ? 38 AC3 17 TYR B 51 ? TYR B 51 . ? 1_555 ? 39 AC3 17 LEU B 63 ? LEU B 63 . ? 1_555 ? 40 AC3 17 SER B 90 ? SER B 90 . ? 1_555 ? 41 AC3 17 GLY B 91 ? GLY B 91 . ? 1_555 ? 42 AC3 17 VAL B 92 ? VAL B 92 . ? 1_555 ? 43 AC3 17 PHE B 94 ? PHE B 94 . ? 1_555 ? 44 AC4 5 VAL A 92 ? VAL A 92 . ? 1_555 ? 45 AC4 5 VAL A 93 ? VAL A 93 . ? 1_555 ? 46 AC4 5 VAL C 100 ? VAL C 100 . ? 1_555 ? 47 AC4 5 GLY C 101 ? GLY C 101 . ? 1_555 ? 48 AC4 5 ARG C 102 ? ARG C 102 . ? 1_555 ? # _atom_sites.entry_id 5D4O _atom_sites.fract_transf_matrix[1][1] 0.019440 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012497 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ASN 108 108 108 ASN ASN A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASN 2 2 ? ? ? B . n B 1 3 ALA 3 3 ? ? ? B . n B 1 4 ILE 4 4 ? ? ? B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 TYR 7 7 7 TYR TYR B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 LYS 10 10 10 LYS LYS B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 HIS 20 20 20 HIS HIS B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 ASP 26 26 26 ASP ASP B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 ALA 31 31 31 ALA ALA B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 TYR 36 36 36 TYR TYR B . n B 1 37 THR 37 37 37 THR THR B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ASN 41 41 41 ASN ASN B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 GLY 44 44 44 GLY GLY B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 HIS 48 48 48 HIS HIS B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 MET 50 50 50 MET MET B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 GLU 52 52 ? ? ? B . n B 1 53 GLY 53 53 ? ? ? B . n B 1 54 HIS 54 54 ? ? ? B . n B 1 55 LEU 55 55 ? ? ? B . n B 1 56 MET 56 56 ? ? ? B . n B 1 57 PHE 57 57 ? ? ? B . n B 1 58 ASN 58 58 ? ? ? B . n B 1 59 GLU 59 59 ? ? ? B . n B 1 60 ASP 60 60 ? ? ? B . n B 1 61 ASP 61 61 ? ? ? B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 MET 65 65 65 MET MET B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 LEU 74 74 74 LEU LEU B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 PRO 77 77 77 PRO PRO B . n B 1 78 LEU 78 78 78 LEU LEU B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 PHE 82 82 82 PHE PHE B . n B 1 83 GLN 83 83 83 GLN GLN B . n B 1 84 PRO 84 84 84 PRO PRO B . n B 1 85 PHE 85 85 85 PHE PHE B . n B 1 86 PHE 86 86 86 PHE PHE B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 HIS 89 89 89 HIS HIS B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 GLY 91 91 91 GLY GLY B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 PHE 94 94 94 PHE PHE B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 HIS 96 96 96 HIS HIS B . n B 1 97 ASP 97 97 97 ASP ASP B . n B 1 98 ILE 98 98 98 ILE ILE B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 PRO 103 103 103 PRO PRO B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 LYS 105 105 ? ? ? B . n B 1 106 PHE 106 106 ? ? ? B . n B 1 107 ARG 107 107 ? ? ? B . n B 1 108 ASN 108 108 ? ? ? B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 ASN 2 2 ? ? ? C . n C 1 3 ALA 3 3 ? ? ? C . n C 1 4 ILE 4 4 4 ILE ILE C . n C 1 5 LYS 5 5 5 LYS LYS C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 TYR 7 7 7 TYR TYR C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 LYS 10 10 10 LYS LYS C . n C 1 11 LYS 11 11 11 LYS LYS C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 GLU 13 13 13 GLU GLU C . n C 1 14 ILE 14 14 14 ILE ILE C . n C 1 15 ILE 15 15 15 ILE ILE C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 GLU 17 17 17 GLU GLU C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 HIS 20 20 20 HIS HIS C . n C 1 21 LYS 21 21 21 LYS LYS C . n C 1 22 GLU 22 22 22 GLU GLU C . n C 1 23 PHE 23 23 23 PHE PHE C . n C 1 24 ALA 24 24 24 ALA ALA C . n C 1 25 THR 25 25 25 THR THR C . n C 1 26 ASP 26 26 26 ASP ASP C . n C 1 27 LEU 27 27 27 LEU LEU C . n C 1 28 LEU 28 28 28 LEU LEU C . n C 1 29 ASP 29 29 29 ASP ASP C . n C 1 30 ARG 30 30 30 ARG ARG C . n C 1 31 ALA 31 31 31 ALA ALA C . n C 1 32 GLY 32 32 32 GLY GLY C . n C 1 33 VAL 33 33 33 VAL VAL C . n C 1 34 LYS 34 34 34 LYS LYS C . n C 1 35 GLY 35 35 35 GLY GLY C . n C 1 36 TYR 36 36 36 TYR TYR C . n C 1 37 THR 37 37 37 THR THR C . n C 1 38 ILE 38 38 38 ILE ILE C . n C 1 39 VAL 39 39 39 VAL VAL C . n C 1 40 GLY 40 40 40 GLY GLY C . n C 1 41 ASN 41 41 41 ASN ASN C . n C 1 42 LEU 42 42 42 LEU LEU C . n C 1 43 SER 43 43 43 SER SER C . n C 1 44 GLY 44 44 44 GLY GLY C . n C 1 45 LYS 45 45 45 LYS LYS C . n C 1 46 GLY 46 46 46 GLY GLY C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 HIS 48 48 48 HIS HIS C . n C 1 49 GLY 49 49 49 GLY GLY C . n C 1 50 MET 50 50 50 MET MET C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 GLU 52 52 52 GLU GLU C . n C 1 53 GLY 53 53 53 GLY GLY C . n C 1 54 HIS 54 54 54 HIS HIS C . n C 1 55 LEU 55 55 55 LEU LEU C . n C 1 56 MET 56 56 56 MET MET C . n C 1 57 PHE 57 57 57 PHE PHE C . n C 1 58 ASN 58 58 58 ASN ASN C . n C 1 59 GLU 59 59 59 GLU GLU C . n C 1 60 ASP 60 60 60 ASP ASP C . n C 1 61 ASP 61 61 61 ASP ASP C . n C 1 62 ALA 62 62 62 ALA ALA C . n C 1 63 LEU 63 63 63 LEU LEU C . n C 1 64 ILE 64 64 64 ILE ILE C . n C 1 65 MET 65 65 65 MET MET C . n C 1 66 ILE 66 66 66 ILE ILE C . n C 1 67 ILE 67 67 67 ILE ILE C . n C 1 68 ALA 68 68 68 ALA ALA C . n C 1 69 ALA 69 69 69 ALA ALA C . n C 1 70 VAL 70 70 70 VAL VAL C . n C 1 71 PRO 71 71 71 PRO PRO C . n C 1 72 GLU 72 72 72 GLU GLU C . n C 1 73 GLU 73 73 73 GLU GLU C . n C 1 74 LEU 74 74 74 LEU LEU C . n C 1 75 VAL 75 75 75 VAL VAL C . n C 1 76 GLY 76 76 76 GLY GLY C . n C 1 77 PRO 77 77 77 PRO PRO C . n C 1 78 LEU 78 78 78 LEU LEU C . n C 1 79 LEU 79 79 79 LEU LEU C . n C 1 80 GLU 80 80 80 GLU GLU C . n C 1 81 GLY 81 81 81 GLY GLY C . n C 1 82 PHE 82 82 82 PHE PHE C . n C 1 83 GLN 83 83 83 GLN GLN C . n C 1 84 PRO 84 84 84 PRO PRO C . n C 1 85 PHE 85 85 85 PHE PHE C . n C 1 86 PHE 86 86 86 PHE PHE C . n C 1 87 GLU 87 87 87 GLU GLU C . n C 1 88 ALA 88 88 88 ALA ALA C . n C 1 89 HIS 89 89 89 HIS HIS C . n C 1 90 SER 90 90 90 SER SER C . n C 1 91 GLY 91 91 91 GLY GLY C . n C 1 92 VAL 92 92 92 VAL VAL C . n C 1 93 VAL 93 93 93 VAL VAL C . n C 1 94 PHE 94 94 94 PHE PHE C . n C 1 95 VAL 95 95 95 VAL VAL C . n C 1 96 HIS 96 96 96 HIS HIS C . n C 1 97 ASP 97 97 97 ASP ASP C . n C 1 98 ILE 98 98 98 ILE ILE C . n C 1 99 GLN 99 99 99 GLN GLN C . n C 1 100 VAL 100 100 100 VAL VAL C . n C 1 101 GLY 101 101 101 GLY GLY C . n C 1 102 ARG 102 102 102 ARG ARG C . n C 1 103 PRO 103 103 103 PRO PRO C . n C 1 104 ILE 104 104 104 ILE ILE C . n C 1 105 LYS 105 105 105 LYS LYS C . n C 1 106 PHE 106 106 106 PHE PHE C . n C 1 107 ARG 107 107 107 ARG ARG C . n C 1 108 ASN 108 108 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP 1 201 1 ADP ADP A . E 3 BCT 1 202 1 BCT BCT A . F 4 AMP 1 203 1 AMP AMP A . G 3 BCT 1 201 3 BCT BCT C . H 5 HOH 1 301 33 HOH HOH A . H 5 HOH 2 302 51 HOH HOH A . H 5 HOH 3 303 21 HOH HOH A . H 5 HOH 4 304 69 HOH HOH A . H 5 HOH 5 305 109 HOH HOH A . H 5 HOH 6 306 44 HOH HOH A . H 5 HOH 7 307 31 HOH HOH A . H 5 HOH 8 308 3 HOH HOH A . H 5 HOH 9 309 54 HOH HOH A . H 5 HOH 10 310 1 HOH HOH A . H 5 HOH 11 311 68 HOH HOH A . H 5 HOH 12 312 10 HOH HOH A . H 5 HOH 13 313 103 HOH HOH A . H 5 HOH 14 314 25 HOH HOH A . H 5 HOH 15 315 79 HOH HOH A . H 5 HOH 16 316 34 HOH HOH A . H 5 HOH 17 317 32 HOH HOH A . H 5 HOH 18 318 8 HOH HOH A . H 5 HOH 19 319 13 HOH HOH A . H 5 HOH 20 320 6 HOH HOH A . H 5 HOH 21 321 46 HOH HOH A . H 5 HOH 22 322 7 HOH HOH A . H 5 HOH 23 323 94 HOH HOH A . H 5 HOH 24 324 74 HOH HOH A . H 5 HOH 25 325 71 HOH HOH A . H 5 HOH 26 326 35 HOH HOH A . H 5 HOH 27 327 58 HOH HOH A . H 5 HOH 28 328 27 HOH HOH A . H 5 HOH 29 329 18 HOH HOH A . H 5 HOH 30 330 84 HOH HOH A . H 5 HOH 31 331 104 HOH HOH A . H 5 HOH 32 332 78 HOH HOH A . H 5 HOH 33 333 72 HOH HOH A . H 5 HOH 34 334 16 HOH HOH A . H 5 HOH 35 335 98 HOH HOH A . H 5 HOH 36 336 50 HOH HOH A . H 5 HOH 37 337 60 HOH HOH A . H 5 HOH 38 338 42 HOH HOH A . H 5 HOH 39 339 62 HOH HOH A . H 5 HOH 40 340 5 HOH HOH A . H 5 HOH 41 341 41 HOH HOH A . H 5 HOH 42 342 48 HOH HOH A . H 5 HOH 43 343 53 HOH HOH A . H 5 HOH 44 344 37 HOH HOH A . H 5 HOH 45 345 80 HOH HOH A . H 5 HOH 46 346 88 HOH HOH A . H 5 HOH 47 347 95 HOH HOH A . I 5 HOH 1 201 83 HOH HOH B . I 5 HOH 2 202 75 HOH HOH B . I 5 HOH 3 203 30 HOH HOH B . I 5 HOH 4 204 2 HOH HOH B . I 5 HOH 5 205 28 HOH HOH B . I 5 HOH 6 206 81 HOH HOH B . I 5 HOH 7 207 73 HOH HOH B . I 5 HOH 8 208 76 HOH HOH B . I 5 HOH 9 209 96 HOH HOH B . I 5 HOH 10 210 107 HOH HOH B . I 5 HOH 11 211 4 HOH HOH B . I 5 HOH 12 212 55 HOH HOH B . I 5 HOH 13 213 115 HOH HOH B . I 5 HOH 14 214 40 HOH HOH B . I 5 HOH 15 215 36 HOH HOH B . I 5 HOH 16 216 29 HOH HOH B . I 5 HOH 17 217 85 HOH HOH B . I 5 HOH 18 218 112 HOH HOH B . I 5 HOH 19 219 19 HOH HOH B . I 5 HOH 20 220 70 HOH HOH B . I 5 HOH 21 221 20 HOH HOH B . I 5 HOH 22 222 102 HOH HOH B . I 5 HOH 23 223 59 HOH HOH B . J 5 HOH 1 301 43 HOH HOH C . J 5 HOH 2 302 64 HOH HOH C . J 5 HOH 3 303 24 HOH HOH C . J 5 HOH 4 304 38 HOH HOH C . J 5 HOH 5 305 114 HOH HOH C . J 5 HOH 6 306 61 HOH HOH C . J 5 HOH 7 307 57 HOH HOH C . J 5 HOH 8 308 11 HOH HOH C . J 5 HOH 9 309 63 HOH HOH C . J 5 HOH 10 310 87 HOH HOH C . J 5 HOH 11 311 56 HOH HOH C . J 5 HOH 12 312 65 HOH HOH C . J 5 HOH 13 313 92 HOH HOH C . J 5 HOH 14 314 17 HOH HOH C . J 5 HOH 15 315 113 HOH HOH C . J 5 HOH 16 316 15 HOH HOH C . J 5 HOH 17 317 77 HOH HOH C . J 5 HOH 18 318 111 HOH HOH C . J 5 HOH 19 319 66 HOH HOH C . J 5 HOH 20 320 39 HOH HOH C . J 5 HOH 21 321 93 HOH HOH C . J 5 HOH 22 322 82 HOH HOH C . J 5 HOH 23 323 89 HOH HOH C . J 5 HOH 24 324 45 HOH HOH C . J 5 HOH 25 325 9 HOH HOH C . J 5 HOH 26 326 91 HOH HOH C . J 5 HOH 27 327 86 HOH HOH C . J 5 HOH 28 328 101 HOH HOH C . J 5 HOH 29 329 105 HOH HOH C . J 5 HOH 30 330 22 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7000 ? 1 MORE -24 ? 1 'SSA (A^2)' 13630 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-28 2 'Structure model' 1 1 2019-10-23 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_prerelease_seq 4 2 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 14 3 'Structure model' '_database_2.pdbx_DOI' 15 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 19.7433 -17.5239 -28.8359 -0.0228 -0.0495 -0.0640 -0.0073 0.0233 0.0133 1.3429 1.6511 1.5592 -0.0818 -0.1243 0.6224 0.0306 0.0088 -0.0394 0.1042 0.1006 -0.1256 -0.2625 -0.1601 -0.0030 'X-RAY DIFFRACTION' 2 ? refined 15.9917 -15.7523 -9.8956 -0.0418 -0.0291 -0.0838 -0.0133 0.0072 0.0021 1.1820 3.3924 1.7711 1.1310 0.2713 0.7423 0.0787 -0.1006 0.0220 -0.1944 0.1288 0.0915 0.4641 0.0034 -0.0217 'X-RAY DIFFRACTION' 3 ? refined 7.1770 -29.5849 -19.4820 -0.0648 -0.0664 -0.0603 -0.0421 0.0209 0.0153 1.3408 2.2916 3.6520 0.0464 -0.0252 0.3171 -0.0343 0.0070 0.0273 -0.0647 -0.1686 0.3721 0.1931 0.4160 -0.3146 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 108 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 5 B 104 '{ B|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 4 C 107 '{ C|* }' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 2.10.0 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS B 48 ? ? 52.21 73.83 2 1 GLU C 52 ? ? -34.30 -37.20 3 1 ARG C 102 ? ? -117.09 77.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 48 ? CG ? A HIS 48 CG 2 1 Y 1 A HIS 48 ? ND1 ? A HIS 48 ND1 3 1 Y 1 A HIS 48 ? CD2 ? A HIS 48 CD2 4 1 Y 1 A HIS 48 ? CE1 ? A HIS 48 CE1 5 1 Y 1 A HIS 48 ? NE2 ? A HIS 48 NE2 6 1 Y 1 A GLU 59 ? CG ? A GLU 59 CG 7 1 Y 1 A GLU 59 ? CD ? A GLU 59 CD 8 1 Y 1 A GLU 59 ? OE1 ? A GLU 59 OE1 9 1 Y 1 A GLU 59 ? OE2 ? A GLU 59 OE2 10 1 Y 1 A GLN 83 ? CG ? A GLN 83 CG 11 1 Y 1 A GLN 83 ? CD ? A GLN 83 CD 12 1 Y 1 A GLN 83 ? OE1 ? A GLN 83 OE1 13 1 Y 1 A GLN 83 ? NE2 ? A GLN 83 NE2 14 1 Y 1 B HIS 48 ? CG ? B HIS 48 CG 15 1 Y 1 B HIS 48 ? ND1 ? B HIS 48 ND1 16 1 Y 1 B HIS 48 ? CD2 ? B HIS 48 CD2 17 1 Y 1 B HIS 48 ? CE1 ? B HIS 48 CE1 18 1 Y 1 B HIS 48 ? NE2 ? B HIS 48 NE2 19 1 Y 1 B ILE 104 ? CG1 ? B ILE 104 CG1 20 1 Y 1 B ILE 104 ? CG2 ? B ILE 104 CG2 21 1 Y 1 B ILE 104 ? CD1 ? B ILE 104 CD1 22 1 Y 1 C ILE 4 ? CG1 ? C ILE 4 CG1 23 1 Y 1 C ILE 4 ? CG2 ? C ILE 4 CG2 24 1 Y 1 C ILE 4 ? CD1 ? C ILE 4 CD1 25 1 Y 1 C MET 50 ? CG ? C MET 50 CG 26 1 Y 1 C MET 50 ? SD ? C MET 50 SD 27 1 Y 1 C MET 50 ? CE ? C MET 50 CE 28 1 Y 1 C LEU 55 ? CG ? C LEU 55 CG 29 1 Y 1 C LEU 55 ? CD1 ? C LEU 55 CD1 30 1 Y 1 C LEU 55 ? CD2 ? C LEU 55 CD2 31 1 Y 1 C GLU 87 ? CG ? C GLU 87 CG 32 1 Y 1 C GLU 87 ? CD ? C GLU 87 CD 33 1 Y 1 C GLU 87 ? OE1 ? C GLU 87 OE1 34 1 Y 1 C GLU 87 ? OE2 ? C GLU 87 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 B MET 1 ? B MET 1 4 1 Y 1 B ASN 2 ? B ASN 2 5 1 Y 1 B ALA 3 ? B ALA 3 6 1 Y 1 B ILE 4 ? B ILE 4 7 1 Y 1 B GLU 52 ? B GLU 52 8 1 Y 1 B GLY 53 ? B GLY 53 9 1 Y 1 B HIS 54 ? B HIS 54 10 1 Y 1 B LEU 55 ? B LEU 55 11 1 Y 1 B MET 56 ? B MET 56 12 1 Y 1 B PHE 57 ? B PHE 57 13 1 Y 1 B ASN 58 ? B ASN 58 14 1 Y 1 B GLU 59 ? B GLU 59 15 1 Y 1 B ASP 60 ? B ASP 60 16 1 Y 1 B ASP 61 ? B ASP 61 17 1 Y 1 B LYS 105 ? B LYS 105 18 1 Y 1 B PHE 106 ? B PHE 106 19 1 Y 1 B ARG 107 ? B ARG 107 20 1 Y 1 B ASN 108 ? B ASN 108 21 1 Y 1 C MET 1 ? C MET 1 22 1 Y 1 C ASN 2 ? C ASN 2 23 1 Y 1 C ALA 3 ? C ALA 3 24 1 Y 1 C ASN 108 ? C ASN 108 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 AMP P P N N 56 AMP O1P O N N 57 AMP O2P O N N 58 AMP O3P O N N 59 AMP "O5'" O N N 60 AMP "C5'" C N N 61 AMP "C4'" C N R 62 AMP "O4'" O N N 63 AMP "C3'" C N S 64 AMP "O3'" O N N 65 AMP "C2'" C N R 66 AMP "O2'" O N N 67 AMP "C1'" C N R 68 AMP N9 N Y N 69 AMP C8 C Y N 70 AMP N7 N Y N 71 AMP C5 C Y N 72 AMP C6 C Y N 73 AMP N6 N N N 74 AMP N1 N Y N 75 AMP C2 C Y N 76 AMP N3 N Y N 77 AMP C4 C Y N 78 AMP HOP2 H N N 79 AMP HOP3 H N N 80 AMP "H5'1" H N N 81 AMP "H5'2" H N N 82 AMP "H4'" H N N 83 AMP "H3'" H N N 84 AMP "HO3'" H N N 85 AMP "H2'" H N N 86 AMP "HO2'" H N N 87 AMP "H1'" H N N 88 AMP H8 H N N 89 AMP HN61 H N N 90 AMP HN62 H N N 91 AMP H2 H N N 92 ARG N N N N 93 ARG CA C N S 94 ARG C C N N 95 ARG O O N N 96 ARG CB C N N 97 ARG CG C N N 98 ARG CD C N N 99 ARG NE N N N 100 ARG CZ C N N 101 ARG NH1 N N N 102 ARG NH2 N N N 103 ARG OXT O N N 104 ARG H H N N 105 ARG H2 H N N 106 ARG HA H N N 107 ARG HB2 H N N 108 ARG HB3 H N N 109 ARG HG2 H N N 110 ARG HG3 H N N 111 ARG HD2 H N N 112 ARG HD3 H N N 113 ARG HE H N N 114 ARG HH11 H N N 115 ARG HH12 H N N 116 ARG HH21 H N N 117 ARG HH22 H N N 118 ARG HXT H N N 119 ASN N N N N 120 ASN CA C N S 121 ASN C C N N 122 ASN O O N N 123 ASN CB C N N 124 ASN CG C N N 125 ASN OD1 O N N 126 ASN ND2 N N N 127 ASN OXT O N N 128 ASN H H N N 129 ASN H2 H N N 130 ASN HA H N N 131 ASN HB2 H N N 132 ASN HB3 H N N 133 ASN HD21 H N N 134 ASN HD22 H N N 135 ASN HXT H N N 136 ASP N N N N 137 ASP CA C N S 138 ASP C C N N 139 ASP O O N N 140 ASP CB C N N 141 ASP CG C N N 142 ASP OD1 O N N 143 ASP OD2 O N N 144 ASP OXT O N N 145 ASP H H N N 146 ASP H2 H N N 147 ASP HA H N N 148 ASP HB2 H N N 149 ASP HB3 H N N 150 ASP HD2 H N N 151 ASP HXT H N N 152 BCT C C N N 153 BCT O1 O N N 154 BCT O2 O N N 155 BCT O3 O N N 156 BCT HO3 H N N 157 GLN N N N N 158 GLN CA C N S 159 GLN C C N N 160 GLN O O N N 161 GLN CB C N N 162 GLN CG C N N 163 GLN CD C N N 164 GLN OE1 O N N 165 GLN NE2 N N N 166 GLN OXT O N N 167 GLN H H N N 168 GLN H2 H N N 169 GLN HA H N N 170 GLN HB2 H N N 171 GLN HB3 H N N 172 GLN HG2 H N N 173 GLN HG3 H N N 174 GLN HE21 H N N 175 GLN HE22 H N N 176 GLN HXT H N N 177 GLU N N N N 178 GLU CA C N S 179 GLU C C N N 180 GLU O O N N 181 GLU CB C N N 182 GLU CG C N N 183 GLU CD C N N 184 GLU OE1 O N N 185 GLU OE2 O N N 186 GLU OXT O N N 187 GLU H H N N 188 GLU H2 H N N 189 GLU HA H N N 190 GLU HB2 H N N 191 GLU HB3 H N N 192 GLU HG2 H N N 193 GLU HG3 H N N 194 GLU HE2 H N N 195 GLU HXT H N N 196 GLY N N N N 197 GLY CA C N N 198 GLY C C N N 199 GLY O O N N 200 GLY OXT O N N 201 GLY H H N N 202 GLY H2 H N N 203 GLY HA2 H N N 204 GLY HA3 H N N 205 GLY HXT H N N 206 HIS N N N N 207 HIS CA C N S 208 HIS C C N N 209 HIS O O N N 210 HIS CB C N N 211 HIS CG C Y N 212 HIS ND1 N Y N 213 HIS CD2 C Y N 214 HIS CE1 C Y N 215 HIS NE2 N Y N 216 HIS OXT O N N 217 HIS H H N N 218 HIS H2 H N N 219 HIS HA H N N 220 HIS HB2 H N N 221 HIS HB3 H N N 222 HIS HD1 H N N 223 HIS HD2 H N N 224 HIS HE1 H N N 225 HIS HE2 H N N 226 HIS HXT H N N 227 HOH O O N N 228 HOH H1 H N N 229 HOH H2 H N N 230 ILE N N N N 231 ILE CA C N S 232 ILE C C N N 233 ILE O O N N 234 ILE CB C N S 235 ILE CG1 C N N 236 ILE CG2 C N N 237 ILE CD1 C N N 238 ILE OXT O N N 239 ILE H H N N 240 ILE H2 H N N 241 ILE HA H N N 242 ILE HB H N N 243 ILE HG12 H N N 244 ILE HG13 H N N 245 ILE HG21 H N N 246 ILE HG22 H N N 247 ILE HG23 H N N 248 ILE HD11 H N N 249 ILE HD12 H N N 250 ILE HD13 H N N 251 ILE HXT H N N 252 LEU N N N N 253 LEU CA C N S 254 LEU C C N N 255 LEU O O N N 256 LEU CB C N N 257 LEU CG C N N 258 LEU CD1 C N N 259 LEU CD2 C N N 260 LEU OXT O N N 261 LEU H H N N 262 LEU H2 H N N 263 LEU HA H N N 264 LEU HB2 H N N 265 LEU HB3 H N N 266 LEU HG H N N 267 LEU HD11 H N N 268 LEU HD12 H N N 269 LEU HD13 H N N 270 LEU HD21 H N N 271 LEU HD22 H N N 272 LEU HD23 H N N 273 LEU HXT H N N 274 LYS N N N N 275 LYS CA C N S 276 LYS C C N N 277 LYS O O N N 278 LYS CB C N N 279 LYS CG C N N 280 LYS CD C N N 281 LYS CE C N N 282 LYS NZ N N N 283 LYS OXT O N N 284 LYS H H N N 285 LYS H2 H N N 286 LYS HA H N N 287 LYS HB2 H N N 288 LYS HB3 H N N 289 LYS HG2 H N N 290 LYS HG3 H N N 291 LYS HD2 H N N 292 LYS HD3 H N N 293 LYS HE2 H N N 294 LYS HE3 H N N 295 LYS HZ1 H N N 296 LYS HZ2 H N N 297 LYS HZ3 H N N 298 LYS HXT H N N 299 MET N N N N 300 MET CA C N S 301 MET C C N N 302 MET O O N N 303 MET CB C N N 304 MET CG C N N 305 MET SD S N N 306 MET CE C N N 307 MET OXT O N N 308 MET H H N N 309 MET H2 H N N 310 MET HA H N N 311 MET HB2 H N N 312 MET HB3 H N N 313 MET HG2 H N N 314 MET HG3 H N N 315 MET HE1 H N N 316 MET HE2 H N N 317 MET HE3 H N N 318 MET HXT H N N 319 PHE N N N N 320 PHE CA C N S 321 PHE C C N N 322 PHE O O N N 323 PHE CB C N N 324 PHE CG C Y N 325 PHE CD1 C Y N 326 PHE CD2 C Y N 327 PHE CE1 C Y N 328 PHE CE2 C Y N 329 PHE CZ C Y N 330 PHE OXT O N N 331 PHE H H N N 332 PHE H2 H N N 333 PHE HA H N N 334 PHE HB2 H N N 335 PHE HB3 H N N 336 PHE HD1 H N N 337 PHE HD2 H N N 338 PHE HE1 H N N 339 PHE HE2 H N N 340 PHE HZ H N N 341 PHE HXT H N N 342 PRO N N N N 343 PRO CA C N S 344 PRO C C N N 345 PRO O O N N 346 PRO CB C N N 347 PRO CG C N N 348 PRO CD C N N 349 PRO OXT O N N 350 PRO H H N N 351 PRO HA H N N 352 PRO HB2 H N N 353 PRO HB3 H N N 354 PRO HG2 H N N 355 PRO HG3 H N N 356 PRO HD2 H N N 357 PRO HD3 H N N 358 PRO HXT H N N 359 SER N N N N 360 SER CA C N S 361 SER C C N N 362 SER O O N N 363 SER CB C N N 364 SER OG O N N 365 SER OXT O N N 366 SER H H N N 367 SER H2 H N N 368 SER HA H N N 369 SER HB2 H N N 370 SER HB3 H N N 371 SER HG H N N 372 SER HXT H N N 373 THR N N N N 374 THR CA C N S 375 THR C C N N 376 THR O O N N 377 THR CB C N R 378 THR OG1 O N N 379 THR CG2 C N N 380 THR OXT O N N 381 THR H H N N 382 THR H2 H N N 383 THR HA H N N 384 THR HB H N N 385 THR HG1 H N N 386 THR HG21 H N N 387 THR HG22 H N N 388 THR HG23 H N N 389 THR HXT H N N 390 TYR N N N N 391 TYR CA C N S 392 TYR C C N N 393 TYR O O N N 394 TYR CB C N N 395 TYR CG C Y N 396 TYR CD1 C Y N 397 TYR CD2 C Y N 398 TYR CE1 C Y N 399 TYR CE2 C Y N 400 TYR CZ C Y N 401 TYR OH O N N 402 TYR OXT O N N 403 TYR H H N N 404 TYR H2 H N N 405 TYR HA H N N 406 TYR HB2 H N N 407 TYR HB3 H N N 408 TYR HD1 H N N 409 TYR HD2 H N N 410 TYR HE1 H N N 411 TYR HE2 H N N 412 TYR HH H N N 413 TYR HXT H N N 414 VAL N N N N 415 VAL CA C N S 416 VAL C C N N 417 VAL O O N N 418 VAL CB C N N 419 VAL CG1 C N N 420 VAL CG2 C N N 421 VAL OXT O N N 422 VAL H H N N 423 VAL H2 H N N 424 VAL HA H N N 425 VAL HB H N N 426 VAL HG11 H N N 427 VAL HG12 H N N 428 VAL HG13 H N N 429 VAL HG21 H N N 430 VAL HG22 H N N 431 VAL HG23 H N N 432 VAL HXT H N N 433 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 AMP P O1P doub N N 57 AMP P O2P sing N N 58 AMP P O3P sing N N 59 AMP P "O5'" sing N N 60 AMP O2P HOP2 sing N N 61 AMP O3P HOP3 sing N N 62 AMP "O5'" "C5'" sing N N 63 AMP "C5'" "C4'" sing N N 64 AMP "C5'" "H5'1" sing N N 65 AMP "C5'" "H5'2" sing N N 66 AMP "C4'" "O4'" sing N N 67 AMP "C4'" "C3'" sing N N 68 AMP "C4'" "H4'" sing N N 69 AMP "O4'" "C1'" sing N N 70 AMP "C3'" "O3'" sing N N 71 AMP "C3'" "C2'" sing N N 72 AMP "C3'" "H3'" sing N N 73 AMP "O3'" "HO3'" sing N N 74 AMP "C2'" "O2'" sing N N 75 AMP "C2'" "C1'" sing N N 76 AMP "C2'" "H2'" sing N N 77 AMP "O2'" "HO2'" sing N N 78 AMP "C1'" N9 sing N N 79 AMP "C1'" "H1'" sing N N 80 AMP N9 C8 sing Y N 81 AMP N9 C4 sing Y N 82 AMP C8 N7 doub Y N 83 AMP C8 H8 sing N N 84 AMP N7 C5 sing Y N 85 AMP C5 C6 sing Y N 86 AMP C5 C4 doub Y N 87 AMP C6 N6 sing N N 88 AMP C6 N1 doub Y N 89 AMP N6 HN61 sing N N 90 AMP N6 HN62 sing N N 91 AMP N1 C2 sing Y N 92 AMP C2 N3 doub Y N 93 AMP C2 H2 sing N N 94 AMP N3 C4 sing Y N 95 ARG N CA sing N N 96 ARG N H sing N N 97 ARG N H2 sing N N 98 ARG CA C sing N N 99 ARG CA CB sing N N 100 ARG CA HA sing N N 101 ARG C O doub N N 102 ARG C OXT sing N N 103 ARG CB CG sing N N 104 ARG CB HB2 sing N N 105 ARG CB HB3 sing N N 106 ARG CG CD sing N N 107 ARG CG HG2 sing N N 108 ARG CG HG3 sing N N 109 ARG CD NE sing N N 110 ARG CD HD2 sing N N 111 ARG CD HD3 sing N N 112 ARG NE CZ sing N N 113 ARG NE HE sing N N 114 ARG CZ NH1 sing N N 115 ARG CZ NH2 doub N N 116 ARG NH1 HH11 sing N N 117 ARG NH1 HH12 sing N N 118 ARG NH2 HH21 sing N N 119 ARG NH2 HH22 sing N N 120 ARG OXT HXT sing N N 121 ASN N CA sing N N 122 ASN N H sing N N 123 ASN N H2 sing N N 124 ASN CA C sing N N 125 ASN CA CB sing N N 126 ASN CA HA sing N N 127 ASN C O doub N N 128 ASN C OXT sing N N 129 ASN CB CG sing N N 130 ASN CB HB2 sing N N 131 ASN CB HB3 sing N N 132 ASN CG OD1 doub N N 133 ASN CG ND2 sing N N 134 ASN ND2 HD21 sing N N 135 ASN ND2 HD22 sing N N 136 ASN OXT HXT sing N N 137 ASP N CA sing N N 138 ASP N H sing N N 139 ASP N H2 sing N N 140 ASP CA C sing N N 141 ASP CA CB sing N N 142 ASP CA HA sing N N 143 ASP C O doub N N 144 ASP C OXT sing N N 145 ASP CB CG sing N N 146 ASP CB HB2 sing N N 147 ASP CB HB3 sing N N 148 ASP CG OD1 doub N N 149 ASP CG OD2 sing N N 150 ASP OD2 HD2 sing N N 151 ASP OXT HXT sing N N 152 BCT C O1 doub N N 153 BCT C O2 sing N N 154 BCT C O3 sing N N 155 BCT O3 HO3 sing N N 156 GLN N CA sing N N 157 GLN N H sing N N 158 GLN N H2 sing N N 159 GLN CA C sing N N 160 GLN CA CB sing N N 161 GLN CA HA sing N N 162 GLN C O doub N N 163 GLN C OXT sing N N 164 GLN CB CG sing N N 165 GLN CB HB2 sing N N 166 GLN CB HB3 sing N N 167 GLN CG CD sing N N 168 GLN CG HG2 sing N N 169 GLN CG HG3 sing N N 170 GLN CD OE1 doub N N 171 GLN CD NE2 sing N N 172 GLN NE2 HE21 sing N N 173 GLN NE2 HE22 sing N N 174 GLN OXT HXT sing N N 175 GLU N CA sing N N 176 GLU N H sing N N 177 GLU N H2 sing N N 178 GLU CA C sing N N 179 GLU CA CB sing N N 180 GLU CA HA sing N N 181 GLU C O doub N N 182 GLU C OXT sing N N 183 GLU CB CG sing N N 184 GLU CB HB2 sing N N 185 GLU CB HB3 sing N N 186 GLU CG CD sing N N 187 GLU CG HG2 sing N N 188 GLU CG HG3 sing N N 189 GLU CD OE1 doub N N 190 GLU CD OE2 sing N N 191 GLU OE2 HE2 sing N N 192 GLU OXT HXT sing N N 193 GLY N CA sing N N 194 GLY N H sing N N 195 GLY N H2 sing N N 196 GLY CA C sing N N 197 GLY CA HA2 sing N N 198 GLY CA HA3 sing N N 199 GLY C O doub N N 200 GLY C OXT sing N N 201 GLY OXT HXT sing N N 202 HIS N CA sing N N 203 HIS N H sing N N 204 HIS N H2 sing N N 205 HIS CA C sing N N 206 HIS CA CB sing N N 207 HIS CA HA sing N N 208 HIS C O doub N N 209 HIS C OXT sing N N 210 HIS CB CG sing N N 211 HIS CB HB2 sing N N 212 HIS CB HB3 sing N N 213 HIS CG ND1 sing Y N 214 HIS CG CD2 doub Y N 215 HIS ND1 CE1 doub Y N 216 HIS ND1 HD1 sing N N 217 HIS CD2 NE2 sing Y N 218 HIS CD2 HD2 sing N N 219 HIS CE1 NE2 sing Y N 220 HIS CE1 HE1 sing N N 221 HIS NE2 HE2 sing N N 222 HIS OXT HXT sing N N 223 HOH O H1 sing N N 224 HOH O H2 sing N N 225 ILE N CA sing N N 226 ILE N H sing N N 227 ILE N H2 sing N N 228 ILE CA C sing N N 229 ILE CA CB sing N N 230 ILE CA HA sing N N 231 ILE C O doub N N 232 ILE C OXT sing N N 233 ILE CB CG1 sing N N 234 ILE CB CG2 sing N N 235 ILE CB HB sing N N 236 ILE CG1 CD1 sing N N 237 ILE CG1 HG12 sing N N 238 ILE CG1 HG13 sing N N 239 ILE CG2 HG21 sing N N 240 ILE CG2 HG22 sing N N 241 ILE CG2 HG23 sing N N 242 ILE CD1 HD11 sing N N 243 ILE CD1 HD12 sing N N 244 ILE CD1 HD13 sing N N 245 ILE OXT HXT sing N N 246 LEU N CA sing N N 247 LEU N H sing N N 248 LEU N H2 sing N N 249 LEU CA C sing N N 250 LEU CA CB sing N N 251 LEU CA HA sing N N 252 LEU C O doub N N 253 LEU C OXT sing N N 254 LEU CB CG sing N N 255 LEU CB HB2 sing N N 256 LEU CB HB3 sing N N 257 LEU CG CD1 sing N N 258 LEU CG CD2 sing N N 259 LEU CG HG sing N N 260 LEU CD1 HD11 sing N N 261 LEU CD1 HD12 sing N N 262 LEU CD1 HD13 sing N N 263 LEU CD2 HD21 sing N N 264 LEU CD2 HD22 sing N N 265 LEU CD2 HD23 sing N N 266 LEU OXT HXT sing N N 267 LYS N CA sing N N 268 LYS N H sing N N 269 LYS N H2 sing N N 270 LYS CA C sing N N 271 LYS CA CB sing N N 272 LYS CA HA sing N N 273 LYS C O doub N N 274 LYS C OXT sing N N 275 LYS CB CG sing N N 276 LYS CB HB2 sing N N 277 LYS CB HB3 sing N N 278 LYS CG CD sing N N 279 LYS CG HG2 sing N N 280 LYS CG HG3 sing N N 281 LYS CD CE sing N N 282 LYS CD HD2 sing N N 283 LYS CD HD3 sing N N 284 LYS CE NZ sing N N 285 LYS CE HE2 sing N N 286 LYS CE HE3 sing N N 287 LYS NZ HZ1 sing N N 288 LYS NZ HZ2 sing N N 289 LYS NZ HZ3 sing N N 290 LYS OXT HXT sing N N 291 MET N CA sing N N 292 MET N H sing N N 293 MET N H2 sing N N 294 MET CA C sing N N 295 MET CA CB sing N N 296 MET CA HA sing N N 297 MET C O doub N N 298 MET C OXT sing N N 299 MET CB CG sing N N 300 MET CB HB2 sing N N 301 MET CB HB3 sing N N 302 MET CG SD sing N N 303 MET CG HG2 sing N N 304 MET CG HG3 sing N N 305 MET SD CE sing N N 306 MET CE HE1 sing N N 307 MET CE HE2 sing N N 308 MET CE HE3 sing N N 309 MET OXT HXT sing N N 310 PHE N CA sing N N 311 PHE N H sing N N 312 PHE N H2 sing N N 313 PHE CA C sing N N 314 PHE CA CB sing N N 315 PHE CA HA sing N N 316 PHE C O doub N N 317 PHE C OXT sing N N 318 PHE CB CG sing N N 319 PHE CB HB2 sing N N 320 PHE CB HB3 sing N N 321 PHE CG CD1 doub Y N 322 PHE CG CD2 sing Y N 323 PHE CD1 CE1 sing Y N 324 PHE CD1 HD1 sing N N 325 PHE CD2 CE2 doub Y N 326 PHE CD2 HD2 sing N N 327 PHE CE1 CZ doub Y N 328 PHE CE1 HE1 sing N N 329 PHE CE2 CZ sing Y N 330 PHE CE2 HE2 sing N N 331 PHE CZ HZ sing N N 332 PHE OXT HXT sing N N 333 PRO N CA sing N N 334 PRO N CD sing N N 335 PRO N H sing N N 336 PRO CA C sing N N 337 PRO CA CB sing N N 338 PRO CA HA sing N N 339 PRO C O doub N N 340 PRO C OXT sing N N 341 PRO CB CG sing N N 342 PRO CB HB2 sing N N 343 PRO CB HB3 sing N N 344 PRO CG CD sing N N 345 PRO CG HG2 sing N N 346 PRO CG HG3 sing N N 347 PRO CD HD2 sing N N 348 PRO CD HD3 sing N N 349 PRO OXT HXT sing N N 350 SER N CA sing N N 351 SER N H sing N N 352 SER N H2 sing N N 353 SER CA C sing N N 354 SER CA CB sing N N 355 SER CA HA sing N N 356 SER C O doub N N 357 SER C OXT sing N N 358 SER CB OG sing N N 359 SER CB HB2 sing N N 360 SER CB HB3 sing N N 361 SER OG HG sing N N 362 SER OXT HXT sing N N 363 THR N CA sing N N 364 THR N H sing N N 365 THR N H2 sing N N 366 THR CA C sing N N 367 THR CA CB sing N N 368 THR CA HA sing N N 369 THR C O doub N N 370 THR C OXT sing N N 371 THR CB OG1 sing N N 372 THR CB CG2 sing N N 373 THR CB HB sing N N 374 THR OG1 HG1 sing N N 375 THR CG2 HG21 sing N N 376 THR CG2 HG22 sing N N 377 THR CG2 HG23 sing N N 378 THR OXT HXT sing N N 379 TYR N CA sing N N 380 TYR N H sing N N 381 TYR N H2 sing N N 382 TYR CA C sing N N 383 TYR CA CB sing N N 384 TYR CA HA sing N N 385 TYR C O doub N N 386 TYR C OXT sing N N 387 TYR CB CG sing N N 388 TYR CB HB2 sing N N 389 TYR CB HB3 sing N N 390 TYR CG CD1 doub Y N 391 TYR CG CD2 sing Y N 392 TYR CD1 CE1 sing Y N 393 TYR CD1 HD1 sing N N 394 TYR CD2 CE2 doub Y N 395 TYR CD2 HD2 sing N N 396 TYR CE1 CZ doub Y N 397 TYR CE1 HE1 sing N N 398 TYR CE2 CZ sing Y N 399 TYR CE2 HE2 sing N N 400 TYR CZ OH sing N N 401 TYR OH HH sing N N 402 TYR OXT HXT sing N N 403 VAL N CA sing N N 404 VAL N H sing N N 405 VAL N H2 sing N N 406 VAL CA C sing N N 407 VAL CA CB sing N N 408 VAL CA HA sing N N 409 VAL C O doub N N 410 VAL C OXT sing N N 411 VAL CB CG1 sing N N 412 VAL CB CG2 sing N N 413 VAL CB HB sing N N 414 VAL CG1 HG11 sing N N 415 VAL CG1 HG12 sing N N 416 VAL CG1 HG13 sing N N 417 VAL CG2 HG21 sing N N 418 VAL CG2 HG22 sing N N 419 VAL CG2 HG23 sing N N 420 VAL OXT HXT sing N N 421 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'BICARBONATE ION' BCT 4 'ADENOSINE MONOPHOSPHATE' AMP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5D4L _pdbx_initial_refinement_model.details ? #