HEADER TRANSCRIPTION/DNA 08-AUG-15 5D4S TITLE CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORX1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOSE METABOLISM TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-68; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*TP*AP*TP*GP*TP*AP*TP*T)- COMPND 9 3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*AP*AP*TP*AP*CP*AP*TP*AP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)- COMPND 15 3'); COMPND 16 CHAIN: U; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: ARAR, ARAC, YVBS, BSU33970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDJN1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS ARAR, TRANSCRIPTION FACTOR, WINGED-HELIX-TURN-HELIX, TRANSCRIPTION- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.JAIN,N.NARAYANAN,D.T.NAIR REVDAT 4 08-NOV-23 5D4S 1 REMARK REVDAT 3 27-SEP-23 5D4S 1 REMARK REVDAT 2 27-JAN-16 5D4S 1 JRNL REMARK REVDAT 1 04-NOV-15 5D4S 0 JRNL AUTH D.JAIN,N.NARAYANAN,D.T.NAIR JRNL TITL PLASTICITY IN REPRESSOR-DNA INTERACTIONS NEUTRALIZES LOSS OF JRNL TITL 2 SYMMETRY IN BIPARTITE OPERATORS. JRNL REF J.BIOL.CHEM. V. 291 1235 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26511320 JRNL DOI 10.1074/JBC.M115.689695 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8738 - 4.1003 1.00 2741 172 0.1706 0.1988 REMARK 3 2 4.1003 - 3.2552 0.99 2656 134 0.1700 0.2250 REMARK 3 3 3.2552 - 2.8439 0.99 2630 138 0.2217 0.2863 REMARK 3 4 2.8439 - 2.5840 1.00 2667 141 0.2166 0.2703 REMARK 3 5 2.5840 - 2.3988 1.00 2639 140 0.2096 0.2747 REMARK 3 6 2.3988 - 2.2574 1.00 2660 117 0.2109 0.2696 REMARK 3 7 2.2574 - 2.1444 1.00 2632 148 0.2152 0.2774 REMARK 3 8 2.1444 - 2.0510 0.99 2636 130 0.2237 0.2562 REMARK 3 9 2.0510 - 1.9721 0.98 2611 129 0.2615 0.2909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2185 REMARK 3 ANGLE : 1.233 3129 REMARK 3 CHIRALITY : 0.049 348 REMARK 3 PLANARITY : 0.007 256 REMARK 3 DIHEDRAL : 24.110 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.1542 7.4116 10.9911 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1716 REMARK 3 T33: 0.2338 T12: -0.0581 REMARK 3 T13: -0.0106 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.4129 L22: 3.4983 REMARK 3 L33: 2.5459 L12: -0.2082 REMARK 3 L13: -0.4733 L23: 0.4228 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.1066 S13: -0.2161 REMARK 3 S21: 0.0753 S22: -0.2120 S23: 0.3006 REMARK 3 S31: 0.3618 S32: -0.2342 S33: 0.1420 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.1710 31.0359 0.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.1632 REMARK 3 T33: 0.2682 T12: 0.0520 REMARK 3 T13: 0.0379 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 3.3513 L22: 3.2483 REMARK 3 L33: 4.0809 L12: -0.2496 REMARK 3 L13: 0.6859 L23: 0.3257 REMARK 3 S TENSOR REMARK 3 S11: 0.1353 S12: 0.2133 S13: 0.4496 REMARK 3 S21: 0.0106 S22: -0.1528 S23: 0.2931 REMARK 3 S31: -0.4177 S32: -0.1481 S33: 0.0370 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN T REMARK 3 ORIGIN FOR THE GROUP (A): 23.0860 18.5013 5.3285 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.3121 REMARK 3 T33: 0.2709 T12: 0.0115 REMARK 3 T13: -0.0335 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.7582 L22: 1.6419 REMARK 3 L33: 4.6034 L12: -0.1143 REMARK 3 L13: -1.9369 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: -0.2417 S13: 0.2188 REMARK 3 S21: -0.1096 S22: 0.1122 S23: -0.1321 REMARK 3 S31: 0.2097 S32: 0.6670 S33: -0.2403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN U REMARK 3 ORIGIN FOR THE GROUP (A): 21.4520 18.5539 8.2078 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.2560 REMARK 3 T33: 0.2405 T12: -0.0537 REMARK 3 T13: -0.0013 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 1.5659 L22: 1.5721 REMARK 3 L33: 3.7950 L12: -1.0961 REMARK 3 L13: -1.1734 L23: 0.7843 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: -0.3186 S13: 0.2727 REMARK 3 S21: 0.0554 S22: 0.2360 S23: -0.1300 REMARK 3 S31: 0.0890 S32: 0.5718 S33: -0.2610 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4H0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 8000, POTASSIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.11400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.11400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 LEU A -12 REMARK 465 GLU A -11 REMARK 465 VAL A -10 REMARK 465 LEU A -9 REMARK 465 PHE A -8 REMARK 465 GLN A -7 REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 GLY B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B -15 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG T 13 O HOH T 101 2.11 REMARK 500 OP1 DA U 16 O HOH U 101 2.12 REMARK 500 OP2 DT T 18 O HOH T 102 2.14 REMARK 500 O HOH A 122 O HOH T 147 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA U 9 O3' DA U 9 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 18 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 HIS B -14 CB - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 HIS B -14 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 HIS B -13 CB - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 HIS B -13 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 DC T 12 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA U 9 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC U 10 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -57.58 68.98 REMARK 500 HIS B -13 154.71 114.49 REMARK 500 ASN B 17 -61.00 65.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B -13 LEU B -12 -43.42 REMARK 500 GLY B -6 PRO B -5 141.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 17 -11.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EGZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT OPERATORS REMARK 900 RELATED ID: 4EGY RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT OPERATORS REMARK 900 RELATED ID: 4H0E RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT OPERATORS REMARK 900 RELATED ID: 5D4R RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT OPERATORS DBREF 5D4S A 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 5D4S B 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 5D4S T 1 21 PDB 5D4S 5D4S 1 21 DBREF 5D4S U 1 21 PDB 5D4S 5D4S 1 21 SEQADV 5D4S MET A -19 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -18 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -17 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -16 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -15 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -14 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS A -13 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU A -12 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLU A -11 UNP P96711 EXPRESSION TAG SEQADV 5D4S VAL A -10 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU A -9 UNP P96711 EXPRESSION TAG SEQADV 5D4S PHE A -8 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLN A -7 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLY A -6 UNP P96711 EXPRESSION TAG SEQADV 5D4S PRO A -5 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU A -4 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLY A -3 UNP P96711 EXPRESSION TAG SEQADV 5D4S SER A -2 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLU A -1 UNP P96711 EXPRESSION TAG SEQADV 5D4S PHE A 0 UNP P96711 EXPRESSION TAG SEQADV 5D4S MET B -19 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -18 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -17 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -16 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -15 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -14 UNP P96711 EXPRESSION TAG SEQADV 5D4S HIS B -13 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU B -12 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLU B -11 UNP P96711 EXPRESSION TAG SEQADV 5D4S VAL B -10 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU B -9 UNP P96711 EXPRESSION TAG SEQADV 5D4S PHE B -8 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLN B -7 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLY B -6 UNP P96711 EXPRESSION TAG SEQADV 5D4S PRO B -5 UNP P96711 EXPRESSION TAG SEQADV 5D4S LEU B -4 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLY B -3 UNP P96711 EXPRESSION TAG SEQADV 5D4S SER B -2 UNP P96711 EXPRESSION TAG SEQADV 5D4S GLU B -1 UNP P96711 EXPRESSION TAG SEQADV 5D4S PHE B 0 UNP P96711 EXPRESSION TAG SEQRES 1 A 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 A 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 A 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 A 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 A 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 A 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 A 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 B 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 B 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 B 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 B 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 B 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 B 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 B 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 T 21 DT DA DA DT DA DT DT DT DG DT DA DC DG SEQRES 2 T 21 DT DA DT DG DT DA DT DT SEQRES 1 U 21 DA DA DA DT DA DC DA DT DA DC DG DT DA SEQRES 2 U 21 DC DA DA DA DT DA DT DT FORMUL 5 HOH *161(H2 O) HELIX 1 AA1 PRO A 3 ILE A 16 1 14 HELIX 2 AA2 THR A 29 GLY A 38 1 10 HELIX 3 AA3 SER A 40 GLN A 54 1 15 HELIX 4 AA4 PRO B 3 ILE B 16 1 14 HELIX 5 AA5 THR B 29 GLY B 38 1 10 HELIX 6 AA6 SER B 40 GLN B 54 1 15 SHEET 1 AA1 2 LEU A 57 VAL A 60 0 SHEET 2 AA1 2 GLY A 64 VAL A 67 -1 O GLY A 64 N VAL A 60 SHEET 1 AA2 2 LEU B 57 VAL B 60 0 SHEET 2 AA2 2 GLY B 64 VAL B 67 -1 O PHE B 66 N TYR B 58 CRYST1 138.228 42.454 67.211 90.00 114.99 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007234 0.000000 0.003372 0.00000 SCALE2 0.000000 0.023555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016415 0.00000