HEADER HYDROLASE 10-AUG-15 5D4Y TITLE A PSYCHROPHILIC GLYCOSIDE HYDROLASE FAMILY 10 ENDO-BETA-1,4-XYLANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENVIRONMENTAL SAMPLES; SOURCE 3 ORGANISM_TAXID: 417443; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS XYLANASE, GH10, TIM-BARREL FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHENG,R.T.GUO REVDAT 4 20-MAR-24 5D4Y 1 HETSYN REVDAT 3 29-JUL-20 5D4Y 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 23-MAY-18 5D4Y 1 SOURCE JRNL REMARK REVDAT 1 24-FEB-16 5D4Y 0 JRNL AUTH Y.ZHENG,Y.LI,W.LIU,C.C.CHEN,T.P.KO,M.HE,Z.XU,M.LIU,H.LUO, JRNL AUTH 2 R.T.GUO,B.YAO,Y.MA JRNL TITL STRUCTURAL INSIGHT INTO POTENTIAL COLD ADAPTATION MECHANISM JRNL TITL 2 THROUGH A PSYCHROPHILIC GLYCOSIDE HYDROLASE FAMILY 10 JRNL TITL 3 ENDO-BETA-1,4-XYLANASE. JRNL REF J.STRUCT.BIOL. V. 193 206 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 26719223 JRNL DOI 10.1016/J.JSB.2015.12.010 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 23011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.82000 REMARK 3 B22 (A**2) : -7.79000 REMARK 3 B33 (A**2) : -5.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.425 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.358 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5315 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4923 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7202 ; 1.580 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11326 ; 0.925 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 9.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;39.238 ;24.807 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;18.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6028 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1274 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : COOT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.5, 0.2M LI2SO4, 30% REMARK 280 (W/V) PEG 4000, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.22100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 VAL A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 LYS A 96 REMARK 465 ASP A 251 REMARK 465 MET A 252 REMARK 465 GLY A 253 REMARK 465 GLY A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ARG A 257 REMARK 465 PHE A 258 REMARK 465 ASN A 259 REMARK 465 GLN A 260 REMARK 465 GLY A 261 REMARK 465 GLN A 262 REMARK 465 ALA A 263 REMARK 465 THR A 264 REMARK 465 PRO A 333 REMARK 465 LYS A 334 REMARK 465 MET A 335 REMARK 465 ASP A 336 REMARK 465 ASN A 337 REMARK 465 ALA A 338 REMARK 465 VAL A 339 REMARK 465 ILE A 340 REMARK 465 MET B -14 REMARK 465 ALA B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 VAL B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 94 REMARK 465 GLU B 95 REMARK 465 GLU B 250 REMARK 465 ASP B 251 REMARK 465 MET B 252 REMARK 465 GLY B 253 REMARK 465 GLY B 254 REMARK 465 GLY B 255 REMARK 465 LEU B 256 REMARK 465 ARG B 257 REMARK 465 PHE B 258 REMARK 465 ASN B 259 REMARK 465 GLN B 260 REMARK 465 GLY B 261 REMARK 465 GLN B 262 REMARK 465 ALA B 263 REMARK 465 THR B 264 REMARK 465 ASP B 332 REMARK 465 PRO B 333 REMARK 465 LYS B 334 REMARK 465 MET B 335 REMARK 465 ASP B 336 REMARK 465 ASN B 337 REMARK 465 ALA B 338 REMARK 465 VAL B 339 REMARK 465 ILE B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 20 O HOH A 501 2.13 REMARK 500 O HOH A 504 O HOH A 513 2.18 REMARK 500 O PRO A 141 O2 XYP D 1 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 138 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO A 220 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO B 138 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 -57.51 -122.88 REMARK 500 GLU A 56 74.40 -104.24 REMARK 500 GLN A 86 54.25 34.30 REMARK 500 PRO A 141 142.40 -35.10 REMARK 500 PRO A 220 145.42 -28.96 REMARK 500 GLU A 243 50.34 -143.98 REMARK 500 TYR A 311 54.23 38.67 REMARK 500 PHE B 12 156.23 174.37 REMARK 500 ASN B 43 -30.05 -137.31 REMARK 500 LEU B 99 -177.10 -63.22 REMARK 500 ASN B 148 50.84 -97.47 REMARK 500 ASP B 171 92.68 -160.60 REMARK 500 PRO B 205 38.12 -81.93 REMARK 500 MET B 222 -33.63 -34.61 REMARK 500 GLU B 243 48.86 -150.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 79 THR A 80 -94.44 REMARK 500 SER A 137 PRO A 138 92.45 REMARK 500 GLY A 219 PRO A 220 -126.88 REMARK 500 HIS B 79 THR B 80 -108.64 REMARK 500 SER B 137 PRO B 138 102.98 REMARK 500 TYR B 311 PRO B 312 -148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 575 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 7.11 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XYP C 1 REMARK 610 XYP D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AY7 RELATED DB: PDB DBREF 5D4Y A -14 340 PDB 5D4Y 5D4Y -14 340 DBREF 5D4Y B -14 340 PDB 5D4Y 5D4Y -14 340 SEQRES 1 A 355 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 355 LYS MET ALA GLN GLY LEU LYS ASP ALA TYR LYS ASP TYR SEQRES 3 A 355 PHE LYS ILE GLY VAL ALA VAL ASN ASN ARG ASN VAL ALA SEQRES 4 A 355 ASP PRO ASP GLN ILE LYS VAL VAL LEU ARG GLU PHE ASN SEQRES 5 A 355 SER ILE THR ALA GLU ASN ALA MET LYS PRO GLN PRO THR SEQRES 6 A 355 GLU PRO LYS LYS GLY GLU PHE ASN TRP GLU ASP ALA ASP SEQRES 7 A 355 LYS ILE ALA ASP PHE CYS ARG ALA ASN GLY ILE LYS MET SEQRES 8 A 355 ARG GLY HIS THR LEU MET TRP HIS SER GLN ILE GLY SER SEQRES 9 A 355 TRP MET TYR GLN ASP GLU LYS GLY ASN LEU LEU SER LYS SEQRES 10 A 355 GLU GLU PHE TYR ALA ASN MET LYS HIS HIS ILE GLN ALA SEQRES 11 A 355 ILE VAL ASN ARG TYR LYS ASP VAL VAL TYR CYS TRP ASP SEQRES 12 A 355 VAL VAL ASN GLU ALA VAL ALA ASP SER PRO VAL TYR PRO SEQRES 13 A 355 GLY ARG PRO GLU LEU ARG ASN SER PRO MET TYR GLN ILE SEQRES 14 A 355 ALA GLY GLU GLU PHE ILE TYR LYS ALA PHE GLU TYR ALA SEQRES 15 A 355 HIS GLU ALA ASP PRO ASP ALA LEU LEU PHE TYR ASN ASP SEQRES 16 A 355 TYR ASN ASP ALA GLU PRO ALA LYS SER GLN ARG ILE TYR SEQRES 17 A 355 ASN LEU VAL LYS ARG MET LYS ASP ALA GLY VAL PRO ILE SEQRES 18 A 355 ASP GLY ILE GLY MET GLN ALA HIS TYR ASN VAL TYR GLY SEQRES 19 A 355 PRO THR MET LYS GLU VAL ASP ASP ALA ILE LYS LEU TYR SEQRES 20 A 355 SER THR VAL VAL ASP HIS ILE HIS LEU THR GLU LEU ASP SEQRES 21 A 355 ILE ARG ILE ASN GLU ASP MET GLY GLY GLY LEU ARG PHE SEQRES 22 A 355 ASN GLN GLY GLN ALA THR VAL SER ASP TRP GLU ARG THR SEQRES 23 A 355 LEU GLN GLN ASP GLN TYR VAL GLN LEU PHE LYS VAL LEU SEQRES 24 A 355 ARG LYS HIS LYS ASP VAL ILE ASP CYS VAL THR PHE TRP SEQRES 25 A 355 ASN VAL SER ASP LYS ASP SER TRP LEU GLY VAL ARG ASN SEQRES 26 A 355 TYR PRO LEU LEU PHE ASP GLU ASN TYR LYS PRO LYS GLN SEQRES 27 A 355 ALA TYR ASN ALA VAL LYS ASN PHE ASP PRO LYS MET ASP SEQRES 28 A 355 ASN ALA VAL ILE SEQRES 1 B 355 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 355 LYS MET ALA GLN GLY LEU LYS ASP ALA TYR LYS ASP TYR SEQRES 3 B 355 PHE LYS ILE GLY VAL ALA VAL ASN ASN ARG ASN VAL ALA SEQRES 4 B 355 ASP PRO ASP GLN ILE LYS VAL VAL LEU ARG GLU PHE ASN SEQRES 5 B 355 SER ILE THR ALA GLU ASN ALA MET LYS PRO GLN PRO THR SEQRES 6 B 355 GLU PRO LYS LYS GLY GLU PHE ASN TRP GLU ASP ALA ASP SEQRES 7 B 355 LYS ILE ALA ASP PHE CYS ARG ALA ASN GLY ILE LYS MET SEQRES 8 B 355 ARG GLY HIS THR LEU MET TRP HIS SER GLN ILE GLY SER SEQRES 9 B 355 TRP MET TYR GLN ASP GLU LYS GLY ASN LEU LEU SER LYS SEQRES 10 B 355 GLU GLU PHE TYR ALA ASN MET LYS HIS HIS ILE GLN ALA SEQRES 11 B 355 ILE VAL ASN ARG TYR LYS ASP VAL VAL TYR CYS TRP ASP SEQRES 12 B 355 VAL VAL ASN GLU ALA VAL ALA ASP SER PRO VAL TYR PRO SEQRES 13 B 355 GLY ARG PRO GLU LEU ARG ASN SER PRO MET TYR GLN ILE SEQRES 14 B 355 ALA GLY GLU GLU PHE ILE TYR LYS ALA PHE GLU TYR ALA SEQRES 15 B 355 HIS GLU ALA ASP PRO ASP ALA LEU LEU PHE TYR ASN ASP SEQRES 16 B 355 TYR ASN ASP ALA GLU PRO ALA LYS SER GLN ARG ILE TYR SEQRES 17 B 355 ASN LEU VAL LYS ARG MET LYS ASP ALA GLY VAL PRO ILE SEQRES 18 B 355 ASP GLY ILE GLY MET GLN ALA HIS TYR ASN VAL TYR GLY SEQRES 19 B 355 PRO THR MET LYS GLU VAL ASP ASP ALA ILE LYS LEU TYR SEQRES 20 B 355 SER THR VAL VAL ASP HIS ILE HIS LEU THR GLU LEU ASP SEQRES 21 B 355 ILE ARG ILE ASN GLU ASP MET GLY GLY GLY LEU ARG PHE SEQRES 22 B 355 ASN GLN GLY GLN ALA THR VAL SER ASP TRP GLU ARG THR SEQRES 23 B 355 LEU GLN GLN ASP GLN TYR VAL GLN LEU PHE LYS VAL LEU SEQRES 24 B 355 ARG LYS HIS LYS ASP VAL ILE ASP CYS VAL THR PHE TRP SEQRES 25 B 355 ASN VAL SER ASP LYS ASP SER TRP LEU GLY VAL ARG ASN SEQRES 26 B 355 TYR PRO LEU LEU PHE ASP GLU ASN TYR LYS PRO LYS GLN SEQRES 27 B 355 ALA TYR ASN ALA VAL LYS ASN PHE ASP PRO LYS MET ASP SEQRES 28 B 355 ASN ALA VAL ILE HET XYP C 1 9 HET XYP C 2 9 HET XYP D 1 9 HET XYP D 2 9 HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 XYP 4(C5 H10 O5) FORMUL 5 HOH *119(H2 O) HELIX 1 AA1 GLY A 3 TYR A 8 1 6 HELIX 2 AA2 ASN A 19 ALA A 24 5 6 HELIX 3 AA3 ASP A 25 PHE A 36 1 12 HELIX 4 AA4 LYS A 46 GLU A 51 1 6 HELIX 5 AA5 TRP A 59 GLY A 73 1 15 HELIX 6 AA6 GLY A 88 TYR A 92 5 5 HELIX 7 AA7 SER A 101 LYS A 121 1 21 HELIX 8 AA8 SER A 149 GLY A 156 1 8 HELIX 9 AA9 GLU A 157 ASP A 171 1 15 HELIX 10 AB1 GLU A 185 GLY A 203 1 19 HELIX 11 AB2 THR A 221 THR A 234 1 14 HELIX 12 AB3 SER A 266 HIS A 287 1 22 HELIX 13 AB4 GLY A 307 TYR A 311 5 5 HELIX 14 AB5 LYS A 322 ASN A 330 1 9 HELIX 15 AB6 LEU B 4 TYR B 8 1 5 HELIX 16 AB7 ASN B 20 ALA B 24 5 5 HELIX 17 AB8 ASP B 25 PHE B 36 1 12 HELIX 18 AB9 LYS B 46 GLU B 51 1 6 HELIX 19 AC1 TRP B 59 ASN B 72 1 14 HELIX 20 AC2 GLY B 88 TYR B 92 5 5 HELIX 21 AC3 SER B 101 LYS B 121 1 21 HELIX 22 AC4 SER B 149 GLY B 156 1 8 HELIX 23 AC5 GLU B 157 ASP B 171 1 15 HELIX 24 AC6 GLU B 185 ALA B 202 1 18 HELIX 25 AC7 THR B 221 SER B 233 1 13 HELIX 26 AC8 TRP B 268 HIS B 287 1 20 HELIX 27 AC9 SER B 300 SER B 304 5 5 HELIX 28 AD1 GLY B 307 TYR B 311 5 5 HELIX 29 AD2 LYS B 322 ASN B 330 1 9 SHEET 1 AA110 HIS A 214 ASN A 216 0 SHEET 2 AA110 HIS A 238 ARG A 247 1 O ARG A 247 N TYR A 215 SHEET 3 AA110 ILE A 291 PHE A 296 1 O THR A 295 N LEU A 244 SHEET 4 AA110 LYS A 13 VAL A 18 1 N GLY A 15 O VAL A 294 SHEET 5 AA110 SER A 38 ALA A 41 1 O THR A 40 N VAL A 18 SHEET 6 AA110 MET A 76 GLY A 78 1 O ARG A 77 N ILE A 39 SHEET 7 AA110 VAL A 124 ASN A 131 1 O CYS A 126 N GLY A 78 SHEET 8 AA110 LEU A 175 ASP A 180 1 O PHE A 177 N TRP A 127 SHEET 9 AA110 GLY A 208 MET A 211 1 O GLY A 210 N TYR A 178 SHEET 10 AA110 HIS A 238 ARG A 247 1 O HIS A 240 N MET A 211 SHEET 1 AA210 HIS B 214 ASN B 216 0 SHEET 2 AA210 HIS B 238 ARG B 247 1 O ASP B 245 N TYR B 215 SHEET 3 AA210 ILE B 291 PHE B 296 1 O THR B 295 N LEU B 241 SHEET 4 AA210 LYS B 13 VAL B 18 1 N GLY B 15 O VAL B 294 SHEET 5 AA210 SER B 38 ALA B 41 1 O THR B 40 N VAL B 18 SHEET 6 AA210 LYS B 75 GLY B 78 1 O ARG B 77 N ILE B 39 SHEET 7 AA210 VAL B 124 ASN B 131 1 O CYS B 126 N GLY B 78 SHEET 8 AA210 LEU B 175 ASP B 180 1 O PHE B 177 N TRP B 127 SHEET 9 AA210 GLY B 208 MET B 211 1 O GLY B 210 N TYR B 178 SHEET 10 AA210 HIS B 238 ARG B 247 1 O HIS B 240 N MET B 211 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.43 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.48 CRYST1 53.386 78.442 88.724 90.00 100.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018732 0.000000 0.003469 0.00000 SCALE2 0.000000 0.012748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011463 0.00000