HEADER METAL BINDING PROTEIN 11-AUG-15 5D67 TITLE CRYSTAL STRUCTURE OF AN EF-HAND CALCIUM BINDING DOMAIN OF CAP-BINDING TITLE 2 PROTEIN COMPLEX-INTERACTING PROTEIN 1 (EFCAB6) FROM HOMO SAPIENS AT TITLE 3 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1160-1260; COMPND 5 SYNONYM: CAP-BINDING PROTEIN COMPLEX-INTERACTING PROTEIN 1,DJ-1- COMPND 6 BINDING PROTEIN,DJBP; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EFCAB6, DJBP, KIAA1672; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, METAL BINDING PROTEIN, KEYWDS 3 PARTNERSHIP FOR NUCLEAR RECEPTOR SIGNALING CODE BIOLOGY, NHRS EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR NUCLEAR AUTHOR 2 RECEPTOR SIGNALING CODE BIOLOGY,PARTNERSHIP FOR NUCLEAR RECEPTOR AUTHOR 3 SIGNALING CODE BIOLOGY (NHRS) REVDAT 4 01-FEB-23 5D67 1 SEQADV REVDAT 3 24-JAN-18 5D67 1 JRNL REVDAT 2 22-NOV-17 5D67 1 REMARK REVDAT 1 02-SEP-15 5D67 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR NUCLEAR RECEPTOR SIGNALING CODE BIOLOGY JRNL TITL CRYSTAL STRUCTURE OF AN EF-HAND CALCIUM BINDING DOMAIN OF JRNL TITL 2 CAP-BINDING PROTEIN COMPLEX-INTERACTING PROTEIN 1 (EFCAB6) JRNL TITL 3 FROM HOMO SAPIENS AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 26704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2632 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2056 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2505 REMARK 3 BIN R VALUE (WORKING SET) : 0.2045 REMARK 3 BIN FREE R VALUE : 0.2272 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.83 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99690 REMARK 3 B22 (A**2) : 0.80190 REMARK 3 B33 (A**2) : 2.19500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44640 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.209 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3046 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4126 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1438 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 452 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3046 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 397 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3757 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.20 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 1092} REMARK 3 ORIGIN FOR THE GROUP (A): 18.0342 26.5910 20.0884 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: -0.0682 REMARK 3 T33: -0.0566 T12: 0.0205 REMARK 3 T13: 0.0046 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.6605 L22: 1.6938 REMARK 3 L33: 2.6810 L12: 0.0992 REMARK 3 L13: 1.3423 L23: -0.3685 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.1052 S13: -0.0658 REMARK 3 S21: -0.0294 S22: 0.0006 S23: -0.0400 REMARK 3 S31: 0.1229 S32: 0.1865 S33: 0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|0 - 1091} REMARK 3 ORIGIN FOR THE GROUP (A): 5.5478 14.2815 36.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: -0.0513 REMARK 3 T33: -0.0636 T12: -0.0076 REMARK 3 T13: 0.0144 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.9854 L22: 2.4750 REMARK 3 L33: 0.9735 L12: -0.7637 REMARK 3 L13: -0.1100 L23: -0.2073 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: 0.0093 S13: 0.0195 REMARK 3 S21: 0.0430 S22: -0.1215 S23: 0.0547 REMARK 3 S31: -0.0469 S32: -0.1002 S33: 0.0314 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {C|0 - 1091} REMARK 3 ORIGIN FOR THE GROUP (A): 26.2920 26.3681 55.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: -0.0909 REMARK 3 T33: -0.0709 T12: -0.0312 REMARK 3 T13: -0.0237 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.0327 L22: 2.3127 REMARK 3 L33: 2.6163 L12: 1.0844 REMARK 3 L13: 0.1857 L23: 0.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: -0.0356 S13: 0.0846 REMARK 3 S21: -0.2599 S22: 0.0998 S23: 0.2108 REMARK 3 S31: -0.0888 S32: -0.0721 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {D|1010 - 1104} REMARK 3 ORIGIN FOR THE GROUP (A): 0.2845 40.0220 67.6047 REMARK 3 T TENSOR REMARK 3 T11: -0.0200 T22: -0.0700 REMARK 3 T33: -0.0392 T12: -0.0087 REMARK 3 T13: -0.0081 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.3990 L22: 2.1405 REMARK 3 L33: 1.2580 L12: -0.8715 REMARK 3 L13: -0.7348 L23: 0.6878 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0972 S13: 0.1212 REMARK 3 S21: -0.0928 S22: 0.0516 S23: -0.2516 REMARK 3 S31: -0.0362 S32: 0.0928 S33: -0.0511 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 2. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4. THE SAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT REMARK 4 REMARK 4 5D67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.118 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.787 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 0.2M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.59350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1093 REMARK 465 ALA A 1094 REMARK 465 ALA A 1095 REMARK 465 THR A 1096 REMARK 465 PRO A 1097 REMARK 465 MSE A 1098 REMARK 465 ALA A 1099 REMARK 465 THR A 1100 REMARK 465 GLY A 1101 REMARK 465 ASP A 1102 REMARK 465 SER A 1103 REMARK 465 ALA A 1104 REMARK 465 VAL A 1105 REMARK 465 ALA A 1106 REMARK 465 GLN A 1107 REMARK 465 ARG A 1108 REMARK 465 GLU B 1092 REMARK 465 THR B 1093 REMARK 465 ALA B 1094 REMARK 465 ALA B 1095 REMARK 465 THR B 1096 REMARK 465 PRO B 1097 REMARK 465 MSE B 1098 REMARK 465 ALA B 1099 REMARK 465 THR B 1100 REMARK 465 GLY B 1101 REMARK 465 ASP B 1102 REMARK 465 SER B 1103 REMARK 465 ALA B 1104 REMARK 465 VAL B 1105 REMARK 465 ALA B 1106 REMARK 465 GLN B 1107 REMARK 465 ARG B 1108 REMARK 465 GLU C 1092 REMARK 465 THR C 1093 REMARK 465 ALA C 1094 REMARK 465 ALA C 1095 REMARK 465 THR C 1096 REMARK 465 PRO C 1097 REMARK 465 MSE C 1098 REMARK 465 ALA C 1099 REMARK 465 THR C 1100 REMARK 465 GLY C 1101 REMARK 465 ASP C 1102 REMARK 465 SER C 1103 REMARK 465 ALA C 1104 REMARK 465 VAL C 1105 REMARK 465 ALA C 1106 REMARK 465 GLN C 1107 REMARK 465 ARG C 1108 REMARK 465 GLY D 1007 REMARK 465 ALA D 1008 REMARK 465 THR D 1009 REMARK 465 VAL D 1105 REMARK 465 ALA D 1106 REMARK 465 GLN D 1107 REMARK 465 ARG D 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 ARG D1012 CG CD NE CZ NH1 NH2 REMARK 470 GLU D1092 CG CD OE1 OE2 REMARK 470 ASP D1102 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1057 -71.70 -117.33 REMARK 500 VAL B1057 -72.83 -118.21 REMARK 500 VAL C1057 -71.43 -119.50 REMARK 500 VAL D1057 -72.05 -119.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 1205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-429677 RELATED DB: TARGETTRACK DBREF 5D67 A 1008 1108 UNP Q5THR3 EFCB6_HUMAN 1160 1260 DBREF 5D67 B 1008 1108 UNP Q5THR3 EFCB6_HUMAN 1160 1260 DBREF 5D67 C 1008 1108 UNP Q5THR3 EFCB6_HUMAN 1160 1260 DBREF 5D67 D 1008 1108 UNP Q5THR3 EFCB6_HUMAN 1160 1260 SEQADV 5D67 GLY A 0 UNP Q5THR3 EXPRESSION TAG SEQADV 5D67 GLY A 1066 UNP Q5THR3 ASP 1218 ENGINEERED MUTATION SEQADV 5D67 GLY B 0 UNP Q5THR3 EXPRESSION TAG SEQADV 5D67 GLY B 1066 UNP Q5THR3 ASP 1218 ENGINEERED MUTATION SEQADV 5D67 GLY C 0 UNP Q5THR3 EXPRESSION TAG SEQADV 5D67 GLY C 1066 UNP Q5THR3 ASP 1218 ENGINEERED MUTATION SEQADV 5D67 GLY D 1007 UNP Q5THR3 EXPRESSION TAG SEQADV 5D67 GLY D 1066 UNP Q5THR3 ASP 1218 ENGINEERED MUTATION SEQRES 1 A 102 GLY ALA THR ALA ASP ARG ASP ILE LEU ALA ARG LEU HIS SEQRES 2 A 102 LYS ALA VAL THR SER HIS TYR HIS ALA ILE THR GLN GLU SEQRES 3 A 102 PHE GLU ASN PHE ASP THR MSE LYS THR ASN THR ILE SER SEQRES 4 A 102 ARG GLU GLU PHE ARG ALA ILE CYS ASN ARG ARG VAL GLN SEQRES 5 A 102 ILE LEU THR ASP GLU GLN PHE GLY ARG LEU TRP ASN GLU SEQRES 6 A 102 MSE PRO VAL ASN ALA LYS GLY ARG LEU LYS TYR PRO ASP SEQRES 7 A 102 PHE LEU SER ARG PHE SER SER GLU THR ALA ALA THR PRO SEQRES 8 A 102 MSE ALA THR GLY ASP SER ALA VAL ALA GLN ARG SEQRES 1 B 102 GLY ALA THR ALA ASP ARG ASP ILE LEU ALA ARG LEU HIS SEQRES 2 B 102 LYS ALA VAL THR SER HIS TYR HIS ALA ILE THR GLN GLU SEQRES 3 B 102 PHE GLU ASN PHE ASP THR MSE LYS THR ASN THR ILE SER SEQRES 4 B 102 ARG GLU GLU PHE ARG ALA ILE CYS ASN ARG ARG VAL GLN SEQRES 5 B 102 ILE LEU THR ASP GLU GLN PHE GLY ARG LEU TRP ASN GLU SEQRES 6 B 102 MSE PRO VAL ASN ALA LYS GLY ARG LEU LYS TYR PRO ASP SEQRES 7 B 102 PHE LEU SER ARG PHE SER SER GLU THR ALA ALA THR PRO SEQRES 8 B 102 MSE ALA THR GLY ASP SER ALA VAL ALA GLN ARG SEQRES 1 C 102 GLY ALA THR ALA ASP ARG ASP ILE LEU ALA ARG LEU HIS SEQRES 2 C 102 LYS ALA VAL THR SER HIS TYR HIS ALA ILE THR GLN GLU SEQRES 3 C 102 PHE GLU ASN PHE ASP THR MSE LYS THR ASN THR ILE SER SEQRES 4 C 102 ARG GLU GLU PHE ARG ALA ILE CYS ASN ARG ARG VAL GLN SEQRES 5 C 102 ILE LEU THR ASP GLU GLN PHE GLY ARG LEU TRP ASN GLU SEQRES 6 C 102 MSE PRO VAL ASN ALA LYS GLY ARG LEU LYS TYR PRO ASP SEQRES 7 C 102 PHE LEU SER ARG PHE SER SER GLU THR ALA ALA THR PRO SEQRES 8 C 102 MSE ALA THR GLY ASP SER ALA VAL ALA GLN ARG SEQRES 1 D 102 GLY ALA THR ALA ASP ARG ASP ILE LEU ALA ARG LEU HIS SEQRES 2 D 102 LYS ALA VAL THR SER HIS TYR HIS ALA ILE THR GLN GLU SEQRES 3 D 102 PHE GLU ASN PHE ASP THR MSE LYS THR ASN THR ILE SER SEQRES 4 D 102 ARG GLU GLU PHE ARG ALA ILE CYS ASN ARG ARG VAL GLN SEQRES 5 D 102 ILE LEU THR ASP GLU GLN PHE GLY ARG LEU TRP ASN GLU SEQRES 6 D 102 MSE PRO VAL ASN ALA LYS GLY ARG LEU LYS TYR PRO ASP SEQRES 7 D 102 PHE LEU SER ARG PHE SER SER GLU THR ALA ALA THR PRO SEQRES 8 D 102 MSE ALA THR GLY ASP SER ALA VAL ALA GLN ARG MODRES 5D67 MSE A 1039 MET MODIFIED RESIDUE MODRES 5D67 MSE A 1072 MET MODIFIED RESIDUE MODRES 5D67 MSE B 1039 MET MODIFIED RESIDUE MODRES 5D67 MSE B 1072 MET MODIFIED RESIDUE MODRES 5D67 MSE C 1039 MET MODIFIED RESIDUE MODRES 5D67 MSE C 1072 MET MODIFIED RESIDUE MODRES 5D67 MSE D 1039 MET MODIFIED RESIDUE MODRES 5D67 MSE D 1072 MET MODIFIED RESIDUE MODRES 5D67 MSE D 1098 MET MODIFIED RESIDUE HET MSE A1039 13 HET MSE A1072 8 HET MSE B1039 8 HET MSE B1072 8 HET MSE C1039 8 HET MSE C1072 8 HET MSE D1039 13 HET MSE D1072 8 HET MSE D1098 8 HET SO4 A1201 5 HET SO4 A1202 5 HET SO4 A1203 5 HET SO4 A1204 5 HET SO4 B1201 5 HET SO4 B1202 5 HET SO4 B1203 5 HET SO4 B1204 5 HET SO4 C1201 5 HET SO4 C1202 5 HET SO4 D1201 5 HET SO4 D1202 5 HET SO4 D1203 5 HET SO4 D1204 5 HET SO4 D1205 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 SO4 15(O4 S 2-) FORMUL 20 HOH *328(H2 O) HELIX 1 AA1 GLY A 0 HIS A 1025 1 19 HELIX 2 AA2 HIS A 1025 ASP A 1037 1 13 HELIX 3 AA3 SER A 1045 VAL A 1057 1 13 HELIX 4 AA4 THR A 1061 GLU A 1071 1 11 HELIX 5 AA5 TYR A 1082 SER A 1090 1 9 HELIX 6 AA6 ALA B 1008 HIS B 1025 1 18 HELIX 7 AA7 HIS B 1025 ASP B 1037 1 13 HELIX 8 AA8 SER B 1045 VAL B 1057 1 13 HELIX 9 AA9 THR B 1061 GLU B 1071 1 11 HELIX 10 AB1 TYR B 1082 SER B 1090 1 9 HELIX 11 AB2 ALA C 1008 HIS C 1025 1 18 HELIX 12 AB3 HIS C 1025 ASP C 1037 1 13 HELIX 13 AB4 SER C 1045 VAL C 1057 1 13 HELIX 14 AB5 THR C 1061 GLU C 1071 1 11 HELIX 15 AB6 TYR C 1082 SER C 1090 1 9 HELIX 16 AB7 ASP D 1011 HIS D 1025 1 15 HELIX 17 AB8 HIS D 1025 ASP D 1037 1 13 HELIX 18 AB9 SER D 1045 VAL D 1057 1 13 HELIX 19 AC1 THR D 1061 MSE D 1072 1 12 HELIX 20 AC2 TYR D 1082 SER D 1091 1 10 SHEET 1 AA1 2 THR A1043 ILE A1044 0 SHEET 2 AA1 2 LEU A1080 LYS A1081 -1 O LEU A1080 N ILE A1044 SHEET 1 AA2 2 THR B1043 ILE B1044 0 SHEET 2 AA2 2 LEU B1080 LYS B1081 -1 O LEU B1080 N ILE B1044 SHEET 1 AA3 2 THR C1043 ILE C1044 0 SHEET 2 AA3 2 LEU C1080 LYS C1081 -1 O LEU C1080 N ILE C1044 SHEET 1 AA4 2 THR D1043 ILE D1044 0 SHEET 2 AA4 2 LEU D1080 LYS D1081 -1 O LEU D1080 N ILE D1044 LINK C THR A1038 N MSE A1039 1555 1555 1.34 LINK C MSE A1039 N LYS A1040 1555 1555 1.36 LINK C GLU A1071 N MSE A1072 1555 1555 1.34 LINK C MSE A1072 N PRO A1073 1555 1555 1.37 LINK C THR B1038 N MSE B1039 1555 1555 1.34 LINK C MSE B1039 N LYS B1040 1555 1555 1.35 LINK C GLU B1071 N MSE B1072 1555 1555 1.35 LINK C MSE B1072 N PRO B1073 1555 1555 1.37 LINK C THR C1038 N MSE C1039 1555 1555 1.34 LINK C MSE C1039 N LYS C1040 1555 1555 1.34 LINK C GLU C1071 N MSE C1072 1555 1555 1.33 LINK C MSE C1072 N PRO C1073 1555 1555 1.37 LINK C THR D1038 N MSE D1039 1555 1555 1.34 LINK C MSE D1039 N LYS D1040 1555 1555 1.36 LINK C GLU D1071 N MSE D1072 1555 1555 1.33 LINK C MSE D1072 N PRO D1073 1555 1555 1.37 LINK C PRO D1097 N MSE D1098 1555 1555 1.35 LINK C MSE D1098 N ALA D1099 1555 1555 1.34 SITE 1 AC1 8 GLY A 0 ALA A1008 THR A1009 HOH A1359 SITE 2 AC1 8 GLY B 0 ALA B1008 THR B1009 ALA B1010 SITE 1 AC2 5 ASN A1075 ALA A1076 LYS A1081 HOH A1344 SITE 2 AC2 5 HOH A1362 SITE 1 AC3 5 GLU A1063 ARG A1067 HOH A1317 TYR C1026 SITE 2 AC3 5 HIS C1027 SITE 1 AC4 4 LEU A1015 HIS A1019 ARG A1088 HOH A1315 SITE 1 AC5 3 ALA B1028 ARG B1055 ARG B1056 SITE 1 AC6 5 TYR B1026 HIS B1027 HOH B1301 HOH B1315 SITE 2 AC6 5 HOH B1331 SITE 1 AC7 8 GLY B 0 ALA B1010 GLU B1063 GLN B1064 SITE 2 AC7 8 ARG B1067 HOH B1318 HOH B1326 HOH B1348 SITE 1 AC8 3 ASN B1075 ALA B1076 LYS B1081 SITE 1 AC9 7 PRO C1073 LYS C1081 ASP C1084 ARG C1088 SITE 2 AC9 7 HOH C1316 HOH C1324 HOH C1355 SITE 1 AD1 7 THR C1041 THR C1043 ASN C1075 LYS C1077 SITE 2 AD1 7 ARG C1079 HOH C1312 HOH C1336 SITE 1 AD2 2 HIS D1019 ARG D1088 SITE 1 AD3 4 LYS D1077 HOH D1321 HOH D1323 HOH D1353 SITE 1 AD4 5 LYS A1077 ASN D1075 ALA D1076 LYS D1081 SITE 2 AD4 5 HOH D1321 SITE 1 AD5 5 ARG C1046 GLU C1047 ASP D1062 GLU D1063 SITE 2 AD5 5 HOH D1318 SITE 1 AD6 5 HIS D1025 HIS D1027 ALA D1028 HOH D1315 SITE 2 AD6 5 HOH D1348 CRYST1 43.407 67.187 70.697 90.00 100.05 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023038 0.000000 0.004083 0.00000 SCALE2 0.000000 0.014884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014365 0.00000