HEADER TRANSLATION 12-AUG-15 5D6G TITLE CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX WITH TITLE 2 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG,MJAL10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 23S RIBOSOMAL RNA; COMPND 8 CHAIN: 0; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RPL10, RPLP0, MJ0509; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PUBS520; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAP0NTF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 13 ORGANISM_TAXID: 2190; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: XL1(BLUE); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PUC19; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PMJA23S-74.UC18 KEYWDS ARCHAEAL PROTEINS, METHANOCOCCUS, PROTEIN STRUCTURE, RNA, RIBOSOMAL KEYWDS 2 PROTEINS, RIBOSOMES, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER REVDAT 2 10-JAN-24 5D6G 1 LINK REVDAT 1 14-SEP-16 5D6G 0 JRNL AUTH A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER JRNL TITL CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN JRNL TITL 2 COMPLEX WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 9780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8280 - 4.7522 0.99 3195 168 0.2020 0.2499 REMARK 3 2 4.7522 - 3.7763 0.99 3080 161 0.2762 0.3303 REMARK 3 3 3.7763 - 3.3002 0.98 3018 158 0.3170 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3378 REMARK 3 ANGLE : 1.435 4935 REMARK 3 CHIRALITY : 0.059 629 REMARK 3 PLANARITY : 0.010 348 REMARK 3 DIHEDRAL : 15.697 1527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 0 AND RESID 1151:1162 REMARK 3 ORIGIN FOR THE GROUP (A): 141.8498 13.2732 39.0647 REMARK 3 T TENSOR REMARK 3 T11: 1.3788 T22: 0.9284 REMARK 3 T33: 1.9421 T12: 0.2157 REMARK 3 T13: -0.1318 T23: -0.4937 REMARK 3 L TENSOR REMARK 3 L11: 2.7232 L22: 3.1339 REMARK 3 L33: 1.6687 L12: 0.2497 REMARK 3 L13: -0.7494 L23: -1.4853 REMARK 3 S TENSOR REMARK 3 S11: -0.3242 S12: -0.4264 S13: 0.4724 REMARK 3 S21: 2.5296 S22: 0.4679 S23: 0.4601 REMARK 3 S31: 0.5028 S32: 0.5485 S33: -0.5845 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 0 AND RESID 1163:1167 REMARK 3 ORIGIN FOR THE GROUP (A): 124.9252 27.1397 38.0574 REMARK 3 T TENSOR REMARK 3 T11: 0.9702 T22: 0.6948 REMARK 3 T33: 1.9500 T12: 0.1006 REMARK 3 T13: 0.0651 T23: -0.1193 REMARK 3 L TENSOR REMARK 3 L11: 6.3154 L22: 3.0700 REMARK 3 L33: 1.9949 L12: -1.4387 REMARK 3 L13: -6.9378 L23: 0.3883 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.7452 S13: 1.4952 REMARK 3 S21: -1.5445 S22: 0.2442 S23: 0.6263 REMARK 3 S31: 1.9478 S32: -0.0068 S33: -0.0992 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 0 AND RESID 1168:1182 REMARK 3 ORIGIN FOR THE GROUP (A): 116.2034 38.2834 58.7273 REMARK 3 T TENSOR REMARK 3 T11: 2.2061 T22: 1.1649 REMARK 3 T33: 1.7473 T12: -0.0020 REMARK 3 T13: 0.2032 T23: -0.4391 REMARK 3 L TENSOR REMARK 3 L11: 0.9094 L22: 1.5210 REMARK 3 L33: 1.9712 L12: -0.7942 REMARK 3 L13: -0.8009 L23: 1.3294 REMARK 3 S TENSOR REMARK 3 S11: -0.3912 S12: -0.5591 S13: 0.9170 REMARK 3 S21: 1.6216 S22: -0.3607 S23: -0.4907 REMARK 3 S31: 0.8875 S32: -0.9916 S33: 0.8805 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 0 AND RESID 1183:1194 REMARK 3 ORIGIN FOR THE GROUP (A): 120.5433 26.2938 58.3613 REMARK 3 T TENSOR REMARK 3 T11: 2.6525 T22: 1.1093 REMARK 3 T33: 1.0446 T12: -0.4499 REMARK 3 T13: 0.5304 T23: -0.6252 REMARK 3 L TENSOR REMARK 3 L11: 0.5042 L22: 5.9898 REMARK 3 L33: 2.8157 L12: -0.3845 REMARK 3 L13: 0.9325 L23: 2.1427 REMARK 3 S TENSOR REMARK 3 S11: 0.4132 S12: -0.7472 S13: -0.0683 REMARK 3 S21: 2.7104 S22: -0.3190 S23: -2.1484 REMARK 3 S31: 1.3373 S32: -1.3312 S33: -0.2209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 0 AND RESID 1195:1204 REMARK 3 ORIGIN FOR THE GROUP (A): 126.9595 32.5842 50.8643 REMARK 3 T TENSOR REMARK 3 T11: 1.6749 T22: 1.0544 REMARK 3 T33: 1.9334 T12: -0.0094 REMARK 3 T13: 0.1294 T23: -0.5926 REMARK 3 L TENSOR REMARK 3 L11: 0.5396 L22: 0.6913 REMARK 3 L33: 1.8412 L12: 0.4128 REMARK 3 L13: 1.3826 L23: 0.5663 REMARK 3 S TENSOR REMARK 3 S11: -0.5143 S12: -0.5894 S13: 0.7957 REMARK 3 S21: 0.0590 S22: -0.9595 S23: 0.7094 REMARK 3 S31: -0.6837 S32: -0.4703 S33: 1.2537 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 0 AND RESID 1205:1221 REMARK 3 ORIGIN FOR THE GROUP (A): 129.6362 29.4281 40.6596 REMARK 3 T TENSOR REMARK 3 T11: 1.2185 T22: 0.7277 REMARK 3 T33: 1.6953 T12: -0.1593 REMARK 3 T13: 0.0831 T23: -0.1549 REMARK 3 L TENSOR REMARK 3 L11: 0.6676 L22: 4.4313 REMARK 3 L33: 3.7097 L12: 0.8694 REMARK 3 L13: 1.3598 L23: 1.6886 REMARK 3 S TENSOR REMARK 3 S11: 0.3617 S12: -0.1674 S13: 1.0535 REMARK 3 S21: 0.6564 S22: -0.9793 S23: -0.8157 REMARK 3 S31: -0.6031 S32: -0.4090 S33: 0.6887 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 0 AND RESID 1222:1224 REMARK 3 ORIGIN FOR THE GROUP (A): 149.1042 14.9240 42.1925 REMARK 3 T TENSOR REMARK 3 T11: 1.6634 T22: 1.2747 REMARK 3 T33: 4.2681 T12: -0.0380 REMARK 3 T13: -0.4917 T23: 0.4625 REMARK 3 L TENSOR REMARK 3 L11: 8.4021 L22: 2.0159 REMARK 3 L33: 0.0895 L12: -0.0959 REMARK 3 L13: 0.4529 L23: 0.8926 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: 0.8181 S13: -0.1194 REMARK 3 S21: 0.9588 S22: 0.5643 S23: 0.8670 REMARK 3 S31: 0.3537 S32: 0.1378 S33: -0.2600 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESID 10:52 REMARK 3 ORIGIN FOR THE GROUP (A): 117.0375 10.6003 37.3931 REMARK 3 T TENSOR REMARK 3 T11: 1.0632 T22: 0.6959 REMARK 3 T33: 1.5388 T12: -0.2196 REMARK 3 T13: 0.3845 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.2066 L22: 2.6665 REMARK 3 L33: 1.6649 L12: -2.3362 REMARK 3 L13: 2.0150 L23: -0.8155 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.7689 S13: -0.6191 REMARK 3 S21: 0.1273 S22: -0.1693 S23: -0.1097 REMARK 3 S31: 0.5249 S32: -0.2674 S33: 0.0687 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND RESID 53:85 REMARK 3 ORIGIN FOR THE GROUP (A): 122.2043 2.4809 30.5200 REMARK 3 T TENSOR REMARK 3 T11: 1.2820 T22: 0.6349 REMARK 3 T33: 1.8377 T12: -0.0273 REMARK 3 T13: -0.1257 T23: -0.1459 REMARK 3 L TENSOR REMARK 3 L11: 2.4798 L22: 2.5403 REMARK 3 L33: 2.6441 L12: 2.0890 REMARK 3 L13: 1.1331 L23: -0.3758 REMARK 3 S TENSOR REMARK 3 S11: 0.3399 S12: 0.2344 S13: -1.7234 REMARK 3 S21: -0.2689 S22: -0.0913 S23: -0.1460 REMARK 3 S31: 1.5157 S32: -0.1740 S33: -0.0260 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND RESID 86:137 REMARK 3 ORIGIN FOR THE GROUP (A): 112.3794 24.8189 25.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.9462 T22: 0.8095 REMARK 3 T33: 1.6991 T12: -0.0807 REMARK 3 T13: -0.0646 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 0.7493 L22: 3.9166 REMARK 3 L33: 1.2850 L12: 0.4610 REMARK 3 L13: -1.4399 L23: 0.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.3233 S12: 0.0789 S13: 0.2716 REMARK 3 S21: -0.8007 S22: 0.5105 S23: -0.3484 REMARK 3 S31: 0.1263 S32: 0.1648 S33: -0.1730 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN A AND RESID 138:155 REMARK 3 ORIGIN FOR THE GROUP (A): 116.9553 52.8303 20.6687 REMARK 3 T TENSOR REMARK 3 T11: 1.1755 T22: 1.0138 REMARK 3 T33: 1.0989 T12: -0.1227 REMARK 3 T13: -0.2063 T23: 0.5103 REMARK 3 L TENSOR REMARK 3 L11: 3.3866 L22: 4.2912 REMARK 3 L33: 5.6638 L12: -1.5740 REMARK 3 L13: -0.5895 L23: 1.9158 REMARK 3 S TENSOR REMARK 3 S11: -0.8760 S12: 1.6261 S13: 1.2767 REMARK 3 S21: -1.1400 S22: 0.0765 S23: -1.1282 REMARK 3 S31: -0.0799 S32: -0.1426 S33: 0.7078 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN A AND RESID 156:201 REMARK 3 ORIGIN FOR THE GROUP (A): 115.3453 33.4438 21.1982 REMARK 3 T TENSOR REMARK 3 T11: 1.0301 T22: 0.9123 REMARK 3 T33: 1.1923 T12: -0.1026 REMARK 3 T13: -0.3513 T23: -0.1309 REMARK 3 L TENSOR REMARK 3 L11: -0.0548 L22: 6.8595 REMARK 3 L33: 2.0834 L12: 0.0320 REMARK 3 L13: -0.9588 L23: -0.7304 REMARK 3 S TENSOR REMARK 3 S11: -0.1954 S12: 0.0027 S13: 0.3387 REMARK 3 S21: -0.4221 S22: -0.6113 S23: -0.3456 REMARK 3 S31: -0.4128 S32: 0.0272 S33: 0.5157 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN A AND RESID 202:214 REMARK 3 ORIGIN FOR THE GROUP (A): 110.4452 10.7443 16.2968 REMARK 3 T TENSOR REMARK 3 T11: 1.9439 T22: 1.8339 REMARK 3 T33: 1.5991 T12: -0.1630 REMARK 3 T13: -0.5903 T23: -0.1186 REMARK 3 L TENSOR REMARK 3 L11: 1.5840 L22: 2.3439 REMARK 3 L33: 5.8116 L12: 1.7695 REMARK 3 L13: -2.1443 L23: -1.4618 REMARK 3 S TENSOR REMARK 3 S11: 0.6003 S12: -1.4510 S13: -3.3755 REMARK 3 S21: -0.0580 S22: -0.2013 S23: -0.4601 REMARK 3 S31: -1.9030 S32: -1.0484 S33: -0.8341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10828 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.560 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE, PH 6.5, 0.2 M REMARK 280 KCL, 0.1 M MAGNESIUM ACETATE, 9% PEG 6000, 0.5 MM CTAB, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.15500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.47500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.15500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.15500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.11500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.15500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, 0 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 9 REMARK 465 GLU A 215 REMARK 465 LYS A 216 REMARK 465 LEU A 217 REMARK 465 LEU A 218 REMARK 465 ALA A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 13 O2' A 0 1156 2.10 REMARK 500 NZ LYS A 130 O GLU A 162 2.12 REMARK 500 O6 G 0 1163 N4 C 0 1216 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G 01151 P G 01151 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 66 -76.82 -82.80 REMARK 500 ALA A 67 -111.72 47.01 REMARK 500 ARG A 89 -133.59 44.01 REMARK 500 LYS A 157 179.96 176.62 REMARK 500 LYS A 164 -178.89 -170.98 REMARK 500 VAL A 166 -74.64 -95.45 REMARK 500 LYS A 169 -179.42 -68.35 REMARK 500 ALA A 178 -71.23 -59.40 REMARK 500 ALA A 197 175.75 177.45 REMARK 500 TYR A 199 168.91 171.27 REMARK 500 GLU A 200 -74.29 -115.33 REMARK 500 ASP A 213 71.33 64.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 162 ASP A 163 147.14 REMARK 500 PRO A 175 LYS A 176 139.58 REMARK 500 LYS A 176 LEU A 177 140.62 REMARK 500 ALA A 179 VAL A 180 131.82 REMARK 500 VAL A 198 TYR A 199 147.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG 01302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A 01183 OP2 REMARK 620 2 G 01203 O6 118.6 REMARK 620 3 U 01204 O4 133.9 80.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG 01301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U 01191 O4 REMARK 620 2 HOH 01402 O 128.2 REMARK 620 3 HOH 01403 O 99.4 60.6 REMARK 620 4 HOH 01404 O 148.6 79.7 108.3 REMARK 620 5 HOH 01405 O 135.7 73.8 54.4 58.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG 0 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG 0 1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JSY RELATED DB: PDB DBREF 5D6G A 10 221 UNP P54049 RL10_METJA 10 221 DBREF1 5D6G 0 1151 1223 REF NR_077055.1 DBREF2 5D6G 0 470491724 1151 1223 SEQADV 5D6G MET A 9 UNP P54049 INITIATING METHIONINE SEQADV 5D6G C 0 1224 REF 470491724 EXPRESSION TAG SEQRES 1 A 213 MET ALA PRO TRP LYS ILE GLU GLU VAL LYS THR LEU LYS SEQRES 2 A 213 GLY LEU ILE LYS SER LYS PRO VAL VAL ALA ILE VAL ASP SEQRES 3 A 213 MET MET ASP VAL PRO ALA PRO GLN LEU GLN GLU ILE ARG SEQRES 4 A 213 ASP LYS ILE ARG ASP LYS VAL LYS LEU ARG MET SER ARG SEQRES 5 A 213 ASN THR LEU ILE ILE ARG ALA LEU LYS GLU ALA ALA GLU SEQRES 6 A 213 GLU LEU ASN ASN PRO LYS LEU ALA GLU LEU ALA ASN TYR SEQRES 7 A 213 VAL GLU ARG GLY ALA ALA ILE LEU VAL THR ASP MET ASN SEQRES 8 A 213 PRO PHE LYS LEU TYR LYS LEU LEU GLU GLU ASN LYS SER SEQRES 9 A 213 PRO ALA PRO VAL ARG GLY GLY GLN ILE ALA PRO CYS ASP SEQRES 10 A 213 ILE LYS VAL GLU LYS GLY SER THR GLY MET PRO PRO GLY SEQRES 11 A 213 PRO PHE LEU GLY GLU LEU LYS SER VAL GLY ILE PRO ALA SEQRES 12 A 213 ALA ILE GLU LYS GLY LYS ILE ALA ILE LYS GLU ASP LYS SEQRES 13 A 213 VAL VAL VAL LYS LYS GLY GLU VAL VAL SER PRO LYS LEU SEQRES 14 A 213 ALA ALA VAL LEU ASP ARG LEU GLY ILE LYS PRO ILE LYS SEQRES 15 A 213 VAL GLY LEU ASN ILE LEU ALA VAL TYR GLU ASP GLY ILE SEQRES 16 A 213 ILE TYR THR PRO ASP VAL LEU LYS VAL ASP GLU GLU LYS SEQRES 17 A 213 LEU LEU ALA ASP ILE SEQRES 1 0 74 G C C U A A G A C A G C G SEQRES 2 0 74 G G G A G G U U G G C U U SEQRES 3 0 74 A G A A G C A G C C A U C SEQRES 4 0 74 C U U U A A A G A G U G C SEQRES 5 0 74 G U A A C A G C U C A C C SEQRES 6 0 74 C G U C G A G G C HET MG 01301 1 HET MG 01302 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *5(H2 O) HELIX 1 AA1 ALA A 10 LYS A 25 1 16 HELIX 2 AA2 PRO A 39 ARG A 51 1 13 HELIX 3 AA3 ARG A 60 LEU A 75 1 16 HELIX 4 AA4 LEU A 80 TYR A 86 5 7 HELIX 5 AA5 ASN A 99 ASN A 110 1 12 HELIX 6 AA6 PRO A 139 VAL A 147 1 9 HELIX 7 AA7 VAL A 180 GLY A 185 1 6 HELIX 8 AA8 PRO A 207 VAL A 212 1 6 SHEET 1 AA1 4 LYS A 55 MET A 58 0 SHEET 2 AA1 4 ALA A 92 THR A 96 -1 O VAL A 95 N LYS A 55 SHEET 3 AA1 4 VAL A 29 ASP A 34 -1 N ALA A 31 O LEU A 94 SHEET 4 AA1 4 ASN A 194 VAL A 198 -1 O ASN A 194 N ASP A 34 SHEET 1 AA2 2 SER A 112 ALA A 114 0 SHEET 2 AA2 2 ILE A 189 VAL A 191 -1 O ILE A 189 N ALA A 114 SHEET 1 AA3 2 ALA A 151 GLU A 154 0 SHEET 2 AA3 2 LYS A 157 ILE A 160 -1 O ALA A 159 N ALA A 152 LINK OP2 A 01183 MG MG 01302 1555 1555 2.44 LINK O4 U 01191 MG MG 01301 1555 1555 2.23 LINK O6 G 01203 MG MG 01302 1555 1555 2.97 LINK O4 U 01204 MG MG 01302 1555 1555 1.81 LINK MG MG 01301 O HOH 01402 1555 1555 2.49 LINK MG MG 01301 O HOH 01403 1555 1555 2.69 LINK MG MG 01301 O HOH 01404 1555 1555 1.83 LINK MG MG 01301 O HOH 01405 1555 1555 2.90 SITE 1 AC1 6 U 01191 U 01192 HOH 01402 HOH 01403 SITE 2 AC1 6 HOH 01404 HOH 01405 SITE 1 AC2 4 A 01183 G 01203 U 01204 C 01207 CRYST1 104.230 108.310 112.950 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008853 0.00000