HEADER OXIDOREDUCTASE 13-AUG-15 5D6X TITLE CRYSTAL STRUCTURE OF DOUBLE TUDOR DOMAIN OF HUMAN LYSINE DEMETHYLASE TITLE 2 KDM4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 5 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DOUBLE TUDOR DOMAIN, READER DOMAIN, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, ENZYME DISCOVERY FOR NATURAL PRODUCT KEYWDS 3 BIOSYNTHESIS, NATPRO, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,Z.SU,J.M.DENU,G.N.PHILLIPS JR.,ENZYME DISCOVERY FOR NATURAL AUTHOR 2 PRODUCT BIOSYNTHESIS (NATPRO) REVDAT 5 06-MAR-24 5D6X 1 REMARK REVDAT 4 25-DEC-19 5D6X 1 REMARK REVDAT 3 20-SEP-17 5D6X 1 REMARK REVDAT 2 07-DEC-16 5D6X 1 JRNL REVDAT 1 25-NOV-15 5D6X 0 JRNL AUTH Z.SU,F.WANG,J.H.LEE,K.E.STEPHENS,R.PAPAZYAN,E.VORONINA, JRNL AUTH 2 K.A.KRAUTKRAMER,A.RAMAN,J.J.THORPE,M.D.BOERSMA, JRNL AUTH 3 V.I.KUZNETSOV,M.D.MILLER,S.D.TAVERNA,G.N.PHILLIPS,J.M.DENU JRNL TITL READER DOMAIN SPECIFICITY AND LYSINE DEMETHYLASE-4 FAMILY JRNL TITL 2 FUNCTION. JRNL REF NAT COMMUN V. 7 13387 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27841353 JRNL DOI 10.1038/NCOMMS13387 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6450 - 6.5300 0.99 1390 148 0.1789 0.1925 REMARK 3 2 6.5300 - 5.1860 1.00 1385 137 0.1466 0.1858 REMARK 3 3 5.1860 - 4.5313 1.00 1402 133 0.1111 0.1521 REMARK 3 4 4.5313 - 4.1173 1.00 1394 142 0.1111 0.1322 REMARK 3 5 4.1173 - 3.8224 1.00 1402 142 0.1160 0.1456 REMARK 3 6 3.8224 - 3.5972 1.00 1365 140 0.1369 0.1695 REMARK 3 7 3.5972 - 3.4171 1.00 1424 136 0.1535 0.1941 REMARK 3 8 3.4171 - 3.2684 1.00 1369 140 0.1750 0.2378 REMARK 3 9 3.2684 - 3.1426 1.00 1395 139 0.1719 0.2196 REMARK 3 10 3.1426 - 3.0342 1.00 1435 133 0.1782 0.2624 REMARK 3 11 3.0342 - 2.9394 1.00 1352 144 0.1807 0.2086 REMARK 3 12 2.9394 - 2.8554 1.00 1398 138 0.1782 0.2282 REMARK 3 13 2.8554 - 2.7802 1.00 1396 134 0.1713 0.2547 REMARK 3 14 2.7802 - 2.7124 1.00 1389 138 0.1775 0.1872 REMARK 3 15 2.7124 - 2.6507 1.00 1419 138 0.1671 0.2191 REMARK 3 16 2.6507 - 2.5943 1.00 1369 132 0.1738 0.2171 REMARK 3 17 2.5943 - 2.5425 1.00 1388 140 0.1754 0.2678 REMARK 3 18 2.5425 - 2.4945 1.00 1388 140 0.1858 0.2463 REMARK 3 19 2.4945 - 2.4499 1.00 1398 138 0.1900 0.2389 REMARK 3 20 2.4499 - 2.4084 1.00 1443 144 0.1893 0.2455 REMARK 3 21 2.4084 - 2.3696 1.00 1368 130 0.1920 0.2010 REMARK 3 22 2.3696 - 2.3331 1.00 1376 138 0.1775 0.1765 REMARK 3 23 2.3331 - 2.2988 1.00 1405 139 0.1772 0.2229 REMARK 3 24 2.2988 - 2.2664 1.00 1401 142 0.1873 0.2522 REMARK 3 25 2.2664 - 2.2358 1.00 1391 136 0.2014 0.2758 REMARK 3 26 2.2358 - 2.2068 1.00 1363 138 0.2113 0.2721 REMARK 3 27 2.2068 - 2.1792 1.00 1420 134 0.2039 0.2572 REMARK 3 28 2.1792 - 2.1529 1.00 1390 138 0.2293 0.2534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2056 REMARK 3 ANGLE : 1.106 2825 REMARK 3 CHIRALITY : 0.048 302 REMARK 3 PLANARITY : 0.004 377 REMARK 3 DIHEDRAL : 16.352 787 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 897 THROUGH 1011) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9714 -10.0745 14.2062 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.3138 REMARK 3 T33: 0.2138 T12: 0.0419 REMARK 3 T13: 0.0218 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.5490 L22: 2.2969 REMARK 3 L33: 0.0239 L12: -0.9105 REMARK 3 L13: -0.0628 L23: 0.2216 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: 0.0399 S13: 0.0028 REMARK 3 S21: -0.0374 S22: -0.0845 S23: -0.1320 REMARK 3 S31: -0.0904 S32: -0.0891 S33: 0.0234 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 897 THROUGH 1011) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5854 -23.4814 26.7545 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.3091 REMARK 3 T33: 0.2286 T12: -0.0225 REMARK 3 T13: 0.0182 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.0654 L22: 2.4193 REMARK 3 L33: 0.4988 L12: -0.1971 REMARK 3 L13: -0.0669 L23: 0.8460 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.0898 S13: -0.0898 REMARK 3 S21: 0.1373 S22: -0.1060 S23: 0.0454 REMARK 3 S31: -0.0044 S32: -0.0559 S33: 0.0612 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 959 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000211855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.140 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (30MG/ML KDM4A DTD, REMARK 280 20MM HEPES PH 7.5, 150MM NACL AND 0.5MM TCEP) MIXED IN A 1:1 REMARK 280 RATIO WITH THE WELL SOLUTION (1.0M AMMONIUM SULFATE, 1% W/V REMARK 280 PEG3350 AND 0.1M BIS-TRIS PH5.5) CRYOPROTECTED WITH ADDITIONAL REMARK 280 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 67.41450 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 67.41450 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 67.41450 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 67.41450 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 67.41450 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1243 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1209 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1242 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 891 REMARK 465 SER A 892 REMARK 465 HIS A 893 REMARK 465 MET A 894 REMARK 465 ALA A 895 REMARK 465 LEU A 896 REMARK 465 GLY B 891 REMARK 465 SER B 892 REMARK 465 HIS B 893 REMARK 465 MET B 894 REMARK 465 ALA B 895 REMARK 465 LEU B 896 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1270 O HOH B 1303 1.95 REMARK 500 O HOH A 1264 O HOH A 1297 1.97 REMARK 500 O HOH A 1306 O HOH A 1316 2.15 REMARK 500 O HOH B 1269 O HOH B 1289 2.18 REMARK 500 O HOH A 1258 O HOH A 1298 2.19 REMARK 500 O HOH B 1201 O HOH B 1282 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 940 41.02 -140.65 REMARK 500 ASN B 940 41.48 -141.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D6Y RELATED DB: PDB REMARK 900 RELATED ID: 5D6W RELATED DB: PDB DBREF 5D6X A 895 1011 UNP O75164 KDM4A_HUMAN 895 1011 DBREF 5D6X B 895 1011 UNP O75164 KDM4A_HUMAN 895 1011 SEQADV 5D6X GLY A 891 UNP O75164 EXPRESSION TAG SEQADV 5D6X SER A 892 UNP O75164 EXPRESSION TAG SEQADV 5D6X HIS A 893 UNP O75164 EXPRESSION TAG SEQADV 5D6X MET A 894 UNP O75164 EXPRESSION TAG SEQADV 5D6X GLY B 891 UNP O75164 EXPRESSION TAG SEQADV 5D6X SER B 892 UNP O75164 EXPRESSION TAG SEQADV 5D6X HIS B 893 UNP O75164 EXPRESSION TAG SEQADV 5D6X MET B 894 UNP O75164 EXPRESSION TAG SEQRES 1 A 121 GLY SER HIS MET ALA LEU GLN SER ILE THR ALA GLY GLN SEQRES 2 A 121 LYS VAL ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN SEQRES 3 A 121 CYS GLU VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU SEQRES 4 A 121 VAL ASN PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR SEQRES 5 A 121 PRO GLU ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY SEQRES 6 A 121 PRO PRO ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR SEQRES 7 A 121 ASP GLY GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS SEQRES 8 A 121 PRO ILE GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER SEQRES 9 A 121 GLN LEU VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP SEQRES 10 A 121 GLU GLU LEU PRO SEQRES 1 B 121 GLY SER HIS MET ALA LEU GLN SER ILE THR ALA GLY GLN SEQRES 2 B 121 LYS VAL ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN SEQRES 3 B 121 CYS GLU VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU SEQRES 4 B 121 VAL ASN PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR SEQRES 5 B 121 PRO GLU ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY SEQRES 6 B 121 PRO PRO ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR SEQRES 7 B 121 ASP GLY GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS SEQRES 8 B 121 PRO ILE GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER SEQRES 9 B 121 GLN LEU VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP SEQRES 10 B 121 GLU GLU LEU PRO HET SO4 A1101 5 HET SO4 A1102 5 HET SO4 B1101 5 HET SO4 B1102 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *242(H2 O) HELIX 1 AA1 TYR A 942 ILE A 946 5 5 HELIX 2 AA2 ASP A 950 GLY A 955 1 6 HELIX 3 AA3 LYS A 999 VAL A 1003 5 5 HELIX 4 AA4 TYR B 942 ILE B 946 5 5 HELIX 5 AA5 ASP B 950 GLY B 955 1 6 HELIX 6 AA6 LYS B 999 VAL B 1003 5 5 SHEET 1 AA1 4 LYS A 904 LYS A 908 0 SHEET 2 AA1 4 PHE A 914 PHE A 932 -1 O CYS A 917 N VAL A 905 SHEET 3 AA1 4 VAL A 972 PHE A 990 -1 O ALA A 979 N GLU A 929 SHEET 4 AA1 4 VAL A 962 ARG A 966 -1 N VAL A 963 O ALA A 975 SHEET 1 AA2 4 PHE A 937 LEU A 941 0 SHEET 2 AA2 4 PHE A 914 PHE A 932 -1 N TYR A 928 O LEU A 941 SHEET 3 AA2 4 VAL A 972 PHE A 990 -1 O ALA A 979 N GLU A 929 SHEET 4 AA2 4 GLN A 995 VAL A 998 -1 O LEU A 996 N VAL A 988 SHEET 1 AA3 4 LYS B 904 LYS B 908 0 SHEET 2 AA3 4 PHE B 914 PHE B 932 -1 O CYS B 917 N VAL B 905 SHEET 3 AA3 4 VAL B 972 PHE B 990 -1 O ALA B 979 N GLU B 929 SHEET 4 AA3 4 VAL B 962 ARG B 966 -1 N VAL B 965 O TYR B 973 SHEET 1 AA4 4 PHE B 937 LEU B 941 0 SHEET 2 AA4 4 PHE B 914 PHE B 932 -1 N TYR B 928 O LEU B 941 SHEET 3 AA4 4 VAL B 972 PHE B 990 -1 O ALA B 979 N GLU B 929 SHEET 4 AA4 4 GLN B 995 VAL B 998 -1 O LEU B 996 N VAL B 988 SITE 1 AC1 6 LYS A 910 SER A 994 GLN A 995 HOH A1234 SITE 2 AC1 6 HOH A1261 HOH A1269 SITE 1 AC2 3 ARG A 921 ARG A 966 GLN A 987 SITE 1 AC3 6 LYS B 910 SER B 994 GLN B 995 HOH B1219 SITE 2 AC3 6 HOH B1261 HOH B1279 SITE 1 AC4 3 ARG B 921 ARG B 966 GLN B 987 CRYST1 134.829 134.829 134.829 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007417 0.00000