HEADER HYDROLASE 13-AUG-15 5D76 TITLE THE CRYSTAL STRUCTURE OF LY7917 WITH THE HYDROLYZING PRODUCT OF MDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHAGE LYSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PHAGE PHI7917; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS SUIS PHAGE PHI7917; SOURCE 4 ORGANISM_TAXID: 1289598; SOURCE 5 GENE: PHI7917_002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSJ2 KEYWDS ENDOLYSIN, PROPHAGE, LYTIC ACTIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WU,W.H.JI,J.H.SUN,J.H.ZHOU REVDAT 2 08-NOV-23 5D76 1 REMARK REVDAT 1 17-AUG-16 5D76 0 JRNL AUTH L.WU,W.H.JI,J.H.SUN,J.H.ZHOU JRNL TITL THE CRYSTAL STRUCTURE OF LY7917 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2871 - 4.8468 0.99 2833 140 0.1903 0.2244 REMARK 3 2 4.8468 - 3.8483 1.00 2733 157 0.1613 0.2142 REMARK 3 3 3.8483 - 3.3623 1.00 2724 138 0.2014 0.2661 REMARK 3 4 3.3623 - 3.0550 1.00 2705 163 0.2337 0.3689 REMARK 3 5 3.0550 - 2.8361 1.00 2706 104 0.2859 0.3688 REMARK 3 6 2.8361 - 2.6689 1.00 2713 134 0.2901 0.3151 REMARK 3 7 2.6689 - 2.5353 0.98 2642 127 0.2846 0.3562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3657 REMARK 3 ANGLE : 1.204 4996 REMARK 3 CHIRALITY : 0.056 543 REMARK 3 PLANARITY : 0.005 650 REMARK 3 DIHEDRAL : 14.831 1250 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 61.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-TARTRATE, 1.2M NACL, PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.25950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.25950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.92800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.56950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.92800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.56950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.25950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.92800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.56950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.25950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.92800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.56950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 GLY A -26 REMARK 465 SER A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 149 REMARK 465 THR A 150 REMARK 465 VAL A 151 REMARK 465 THR A 152 REMARK 465 GLN A 153 REMARK 465 THR A 154 REMARK 465 ALA A 155 REMARK 465 PRO A 156 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 ALA A 159 REMARK 465 GLY A 187 REMARK 465 MET B -27 REMARK 465 GLY B -26 REMARK 465 SER B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 ASN B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 149 REMARK 465 THR B 150 REMARK 465 VAL B 151 REMARK 465 THR B 152 REMARK 465 GLN B 153 REMARK 465 THR B 154 REMARK 465 ALA B 155 REMARK 465 PRO B 156 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 ALA B 159 REMARK 465 LYS B 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 53 OG REMARK 470 LYS A 245 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 57 OH TYR B 69 2.09 REMARK 500 OD1 ASP B 175 NH1 ARG B 195 2.16 REMARK 500 OD1 ASN B 9 NH2 ARG B 12 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 26 CB CYS B 26 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -63.38 75.29 REMARK 500 ALA A 55 99.31 60.77 REMARK 500 SER A 61 101.07 61.20 REMARK 500 LYS A 124 66.02 166.39 REMARK 500 ARG A 125 39.92 -66.44 REMARK 500 VAL A 142 -71.70 -81.36 REMARK 500 THR A 185 49.00 -93.89 REMARK 500 ALA A 191 -174.89 -172.67 REMARK 500 CYS B 26 -71.39 -31.17 REMARK 500 THR B 59 -5.70 160.12 REMARK 500 GLU B 166 110.85 -160.63 REMARK 500 ALA B 176 118.86 -164.40 REMARK 500 ALA B 191 -168.96 -160.65 REMARK 500 ARG B 195 85.54 -55.03 REMARK 500 SER B 219 -132.14 45.38 REMARK 500 ARG B 223 116.26 -12.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58B A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58B B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D74 RELATED DB: PDB DBREF 5D76 A 1 245 UNP M1PKZ3 M1PKZ3_9VIRU 1 245 DBREF 5D76 B 1 245 UNP M1PKZ3 M1PKZ3_9VIRU 1 245 SEQADV 5D76 MET A -27 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY A -26 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER A -25 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -24 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -23 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -22 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -21 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -20 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -19 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -18 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS A -17 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY A -16 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER A -15 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASP A -14 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 TYR A -13 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASP A -12 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ILE A -11 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 PRO A -10 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 THR A -9 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 THR A -8 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLU A -7 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASN A -6 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 LEU A -5 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 TYR A -4 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 PHE A -3 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASN A -2 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY A -1 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER A 0 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 MET B -27 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY B -26 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER B -25 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -24 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -23 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -22 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -21 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -20 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -19 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -18 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 HIS B -17 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY B -16 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER B -15 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASP B -14 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 TYR B -13 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASP B -12 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ILE B -11 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 PRO B -10 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 THR B -9 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 THR B -8 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLU B -7 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASN B -6 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 LEU B -5 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 TYR B -4 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 PHE B -3 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 ASN B -2 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 GLY B -1 UNP M1PKZ3 EXPRESSION TAG SEQADV 5D76 SER B 0 UNP M1PKZ3 EXPRESSION TAG SEQRES 1 A 273 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLY SER SEQRES 2 A 273 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE ASN SEQRES 3 A 273 GLY SER MET THR THR VAL ASN GLU ALA LEU ASN ASN VAL SEQRES 4 A 273 ARG ALA GLN VAL GLY SER GLY VAL SER VAL GLY ASN GLY SEQRES 5 A 273 GLU CYS TYR ALA LEU ALA SER TRP TYR GLU ARG MET ILE SEQRES 6 A 273 SER PRO ASP ALA THR VAL GLY LEU GLY ALA GLY VAL GLY SEQRES 7 A 273 TRP VAL SER GLY ALA THR GLY ASP THR ILE SER ALA LYS SEQRES 8 A 273 ASN ILE GLY SER SER TYR ASN TRP GLN ALA ASN GLY TRP SEQRES 9 A 273 THR VAL SER THR SER GLY PRO PHE GLN ALA GLY GLN ILE SEQRES 10 A 273 VAL THR LEU GLY ALA THR SER GLY ASN PRO TYR GLY HIS SEQRES 11 A 273 VAL VAL ILE VAL GLU ALA VAL ASP GLY ASP ARG LEU THR SEQRES 12 A 273 ILE LEU GLU GLN ASN TYR GLY GLY LYS ARG TYR PRO THR SEQRES 13 A 273 ARG ASN TYR TYR SER ALA ALA SER TYR ARG GLN GLN VAL SEQRES 14 A 273 VAL HIS TYR ILE THR PRO PRO GLY THR VAL THR GLN THR SEQRES 15 A 273 ALA PRO THR SER ALA GLY ALA ARG THR TYR ARG GLU THR SEQRES 16 A 273 GLY THR MET SER VAL THR VAL ASP ALA ILE ASN ILE ARG SEQRES 17 A 273 ARG ALA PRO ASN THR SER GLY GLN ILE VAL ALA THR TYR SEQRES 18 A 273 LYS ARG GLY GLU SER PHE ASP TYR ASP THR VAL ILE ILE SEQRES 19 A 273 ASP THR ASN GLY TYR VAL TRP VAL SER TYR ILE GLY SER SEQRES 20 A 273 SER GLY ILE ARG ASN TYR VAL ALA THR GLY ALA THR LYS SEQRES 21 A 273 ASP GLY LYS ARG TYR GLY ASP ALA TRP GLY THR PHE LYS SEQRES 1 B 273 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLY SER SEQRES 2 B 273 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE ASN SEQRES 3 B 273 GLY SER MET THR THR VAL ASN GLU ALA LEU ASN ASN VAL SEQRES 4 B 273 ARG ALA GLN VAL GLY SER GLY VAL SER VAL GLY ASN GLY SEQRES 5 B 273 GLU CYS TYR ALA LEU ALA SER TRP TYR GLU ARG MET ILE SEQRES 6 B 273 SER PRO ASP ALA THR VAL GLY LEU GLY ALA GLY VAL GLY SEQRES 7 B 273 TRP VAL SER GLY ALA THR GLY ASP THR ILE SER ALA LYS SEQRES 8 B 273 ASN ILE GLY SER SER TYR ASN TRP GLN ALA ASN GLY TRP SEQRES 9 B 273 THR VAL SER THR SER GLY PRO PHE GLN ALA GLY GLN ILE SEQRES 10 B 273 VAL THR LEU GLY ALA THR SER GLY ASN PRO TYR GLY HIS SEQRES 11 B 273 VAL VAL ILE VAL GLU ALA VAL ASP GLY ASP ARG LEU THR SEQRES 12 B 273 ILE LEU GLU GLN ASN TYR GLY GLY LYS ARG TYR PRO THR SEQRES 13 B 273 ARG ASN TYR TYR SER ALA ALA SER TYR ARG GLN GLN VAL SEQRES 14 B 273 VAL HIS TYR ILE THR PRO PRO GLY THR VAL THR GLN THR SEQRES 15 B 273 ALA PRO THR SER ALA GLY ALA ARG THR TYR ARG GLU THR SEQRES 16 B 273 GLY THR MET SER VAL THR VAL ASP ALA ILE ASN ILE ARG SEQRES 17 B 273 ARG ALA PRO ASN THR SER GLY GLN ILE VAL ALA THR TYR SEQRES 18 B 273 LYS ARG GLY GLU SER PHE ASP TYR ASP THR VAL ILE ILE SEQRES 19 B 273 ASP THR ASN GLY TYR VAL TRP VAL SER TYR ILE GLY SER SEQRES 20 B 273 SER GLY ILE ARG ASN TYR VAL ALA THR GLY ALA THR LYS SEQRES 21 B 273 ASP GLY LYS ARG TYR GLY ASP ALA TRP GLY THR PHE LYS HET CL A 301 1 HET CL A 302 1 HET 58B A 303 15 HET 58B B 301 15 HETNAM CL CHLORIDE ION HETNAM 58B L-ALANYL-D-ALPHA-GLUTAMINE FORMUL 3 CL 2(CL 1-) FORMUL 5 58B 2(C8 H15 N3 O4) FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 THR A 3 ALA A 13 1 11 HELIX 2 AA2 GLU A 25 SER A 38 1 14 HELIX 3 AA3 SER A 61 LYS A 63 5 3 HELIX 4 AA4 ASN A 64 TYR A 69 1 6 HELIX 5 AA5 ASN A 70 GLY A 75 5 6 HELIX 6 AA6 ALA A 134 ARG A 138 1 5 HELIX 7 AA7 THR B 3 ALA B 13 1 11 HELIX 8 AA8 GLU B 25 SER B 38 1 14 HELIX 9 AA9 SER B 61 ILE B 65 5 5 HELIX 10 AB1 ASN B 70 GLY B 75 5 6 HELIX 11 AB2 ALA B 134 ARG B 138 1 5 SHEET 1 AA1 6 THR A 77 SER A 79 0 SHEET 2 AA1 6 VAL A 141 THR A 146 -1 O TYR A 144 N SER A 79 SHEET 3 AA1 6 ILE A 89 LEU A 92 -1 N ILE A 89 O ILE A 145 SHEET 4 AA1 6 HIS A 102 ASP A 110 -1 O HIS A 102 N LEU A 92 SHEET 5 AA1 6 ARG A 113 GLU A 118 -1 O LEU A 117 N ILE A 105 SHEET 6 AA1 6 THR A 128 SER A 133 -1 O TYR A 132 N LEU A 114 SHEET 1 AA2 4 ILE A 189 LYS A 194 0 SHEET 2 AA2 4 ALA A 176 ARG A 180 -1 N ILE A 179 O ALA A 191 SHEET 3 AA2 4 ARG A 223 LYS A 232 -1 O TYR A 225 N ARG A 180 SHEET 4 AA2 4 LYS A 235 ARG A 236 -1 O LYS A 235 N LYS A 232 SHEET 1 AA3 7 ILE A 189 LYS A 194 0 SHEET 2 AA3 7 ALA A 176 ARG A 180 -1 N ILE A 179 O ALA A 191 SHEET 3 AA3 7 ARG A 223 LYS A 232 -1 O TYR A 225 N ARG A 180 SHEET 4 AA3 7 GLY A 210 ILE A 217 -1 N VAL A 212 O THR A 228 SHEET 5 AA3 7 SER A 198 ASP A 207 -1 N ILE A 205 O TRP A 213 SHEET 6 AA3 7 ALA A 161 VAL A 172 -1 N TYR A 164 O VAL A 204 SHEET 7 AA3 7 GLY A 242 PHE A 244 -1 O THR A 243 N SER A 171 SHEET 1 AA4 6 THR B 77 SER B 79 0 SHEET 2 AA4 6 VAL B 141 THR B 146 -1 O THR B 146 N THR B 77 SHEET 3 AA4 6 ILE B 89 LEU B 92 -1 N ILE B 89 O ILE B 145 SHEET 4 AA4 6 HIS B 102 ASP B 110 -1 O VAL B 104 N VAL B 90 SHEET 5 AA4 6 ARG B 113 GLU B 118 -1 O THR B 115 N GLU B 107 SHEET 6 AA4 6 THR B 128 SER B 133 -1 O ASN B 130 N ILE B 116 SHEET 1 AA5 6 LYS B 235 ARG B 236 0 SHEET 2 AA5 6 ILE B 222 LYS B 232 -1 N LYS B 232 O LYS B 235 SHEET 3 AA5 6 GLY B 210 GLY B 218 -1 N TYR B 216 O ASN B 224 SHEET 4 AA5 6 SER B 198 ASP B 207 -1 N ASP B 202 O SER B 215 SHEET 5 AA5 6 ALA B 161 VAL B 172 -1 N ARG B 162 O ILE B 206 SHEET 6 AA5 6 GLY B 242 THR B 243 -1 O THR B 243 N SER B 171 SHEET 1 AA6 2 ALA B 176 ARG B 180 0 SHEET 2 AA6 2 ILE B 189 LYS B 194 -1 O VAL B 190 N ILE B 179 CISPEP 1 GLY A 22 ASN A 23 0 16.23 CISPEP 2 GLY A 54 ALA A 55 0 -11.68 CISPEP 3 GLY A 82 PRO A 83 0 -1.66 CISPEP 4 GLY A 122 GLY A 123 0 6.16 CISPEP 5 GLY B 57 ASP B 58 0 1.09 CISPEP 6 GLY B 82 PRO B 83 0 2.47 CISPEP 7 TYR B 121 GLY B 122 0 -7.23 CISPEP 8 SER B 220 GLY B 221 0 -3.35 SITE 1 AC1 2 VAL A 43 ASN A 70 SITE 1 AC2 3 VAL A 52 SER A 53 ASP B 112 SITE 1 AC3 8 ALA A 13 VAL A 15 SER A 17 ALA A 176 SITE 2 AC3 8 ASN A 178 ARG A 180 ALA A 227 TRP A 241 SITE 1 AC4 9 ALA B 13 VAL B 15 GLY B 16 SER B 17 SITE 2 AC4 9 ALA B 176 ILE B 177 ASN B 178 ARG B 180 SITE 3 AC4 9 TRP B 241 CRYST1 69.856 97.139 174.519 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005730 0.00000