HEADER PROTEIN BINDING 13-AUG-15 5D7F TITLE X-RAY STRUCTURE OF CA(2+)-S100B WITH HUMAN RAGE-DERIVED W72 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-100 PROTEIN BETA CHAIN,S-100 PROTEIN SUBUNIT BETA,S100 COMPND 5 CALCIUM-BINDING PROTEIN B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: S100B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEMEX-S100B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS METAL BINDING PROTEIN, MEMBRANE PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.L.JENSEN,C.L.COLBERT REVDAT 2 27-SEP-23 5D7F 1 REMARK LINK REVDAT 1 17-AUG-16 5D7F 0 JRNL AUTH J.L.JENSEN,C.L.COLBERT JRNL TITL X-RAY STRUCTURE OF CA(2+)-S100B WITH HUMAN RAGE-DERIVED W72 JRNL TITL 2 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 43997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2338 - 2.8909 0.95 3833 142 0.1846 0.2049 REMARK 3 2 2.8909 - 2.2947 0.97 3840 140 0.1726 0.1910 REMARK 3 3 2.2947 - 2.0046 0.99 3909 138 0.1374 0.1481 REMARK 3 4 2.0046 - 1.8213 0.96 3773 139 0.1427 0.1559 REMARK 3 5 1.8213 - 1.6908 0.99 3915 140 0.1325 0.1854 REMARK 3 6 1.6908 - 1.5911 1.00 3897 140 0.1214 0.1790 REMARK 3 7 1.5911 - 1.5114 0.96 3810 137 0.1228 0.1654 REMARK 3 8 1.5114 - 1.4456 0.99 3874 137 0.1231 0.1638 REMARK 3 9 1.4456 - 1.3899 1.00 3900 141 0.1342 0.1889 REMARK 3 10 1.3899 - 1.3420 0.98 3846 138 0.1490 0.1749 REMARK 3 11 1.3420 - 1.3000 0.98 3845 134 0.1661 0.2260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1847 REMARK 3 ANGLE : 1.671 2498 REMARK 3 CHIRALITY : 0.105 265 REMARK 3 PLANARITY : 0.008 326 REMARK 3 DIHEDRAL : 13.626 719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 44.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H61 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA CACODYLATE PH 6.8, 22% W/V REMARK 280 PEG 3350, 5MM CACL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.91200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 92 REMARK 465 GLU B 92 REMARK 465 SER P -4 REMARK 465 PRO P -3 REMARK 465 GLN P -2 REMARK 465 GLY P -1 REMARK 465 GLY P 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 56 CD CE NZ REMARK 480 GLU A 87 CB CG CD OE1 OE2 REMARK 480 HIS A 91 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 6 CE NZ REMARK 480 LYS B 27 NZ REMARK 480 LYS B 29 NZ REMARK 480 LYS B 49 CE NZ REMARK 480 LYS B 56 CD CE NZ REMARK 480 GLU B 87 CB CG CD OE1 OE2 REMARK 480 ASP P 4 CG OD1 OD2 REMARK 480 VAL P 9 CG1 CG2 REMARK 480 LEU P 10 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 919 O HOH B 983 2.12 REMARK 500 O HOH B 990 O HOH B 1000 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 85 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 LEU P 10 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 -23.20 -156.85 REMARK 500 PHE A 89 -0.29 -148.80 REMARK 500 GLU A 90 -58.89 -127.95 REMARK 500 HIS B 86 -24.34 -144.50 REMARK 500 PHE B 89 9.16 -150.62 REMARK 500 GLU B 90 -50.21 -133.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1002 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B1002 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 O REMARK 620 2 GLU A 22 O 102.2 REMARK 620 3 ASP A 24 O 82.0 86.2 REMARK 620 4 LYS A 27 O 88.4 160.9 79.5 REMARK 620 5 GLU A 32 OE1 100.1 115.8 156.4 77.1 REMARK 620 6 GLU A 32 OE2 78.2 75.8 149.6 122.3 51.5 REMARK 620 7 HOH A 912 O 170.6 82.5 90.2 85.0 85.0 111.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 ASP A 64 OD1 82.3 REMARK 620 3 ASP A 66 OD1 84.1 82.3 REMARK 620 4 GLU A 68 O 87.1 160.0 79.8 REMARK 620 5 GLU A 73 OE1 113.7 122.3 150.1 77.4 REMARK 620 6 GLU A 73 OE2 87.9 76.9 158.5 119.7 50.8 REMARK 620 7 HOH A 948 O 162.1 84.9 81.8 101.1 83.7 101.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 19 O REMARK 620 2 GLU B 22 O 102.5 REMARK 620 3 ASP B 24 O 81.8 85.2 REMARK 620 4 LYS B 27 O 88.2 160.4 80.1 REMARK 620 5 GLU B 32 OE1 99.4 117.2 156.3 76.3 REMARK 620 6 GLU B 32 OE2 78.1 76.7 149.2 122.0 51.7 REMARK 620 7 HOH B 913 O 169.7 82.6 89.8 84.5 85.9 111.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 62 OD1 REMARK 620 2 ASP B 64 OD1 82.8 REMARK 620 3 ASP B 66 OD1 85.6 81.9 REMARK 620 4 GLU B 68 O 86.4 158.5 78.8 REMARK 620 5 GLU B 73 OE1 113.3 123.8 148.6 77.6 REMARK 620 6 GLU B 73 OE2 87.9 78.6 160.1 119.6 50.6 REMARK 620 7 HOH B 948 O 162.3 85.2 79.9 100.4 84.2 102.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XYN RELATED DB: PDB REMARK 900 4XYN CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT RAGE- REMARK 900 DERIVED PEPTIDE DBREF 5D7F A 1 92 UNP P04271 S100B_HUMAN 1 92 DBREF 5D7F B 1 92 UNP P04271 S100B_HUMAN 1 92 DBREF 5D7F P -4 10 UNP Q15109 RAGE_HUMAN 65 79 SEQRES 1 A 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 A 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 A 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 A 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 A 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 A 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 A 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 A 92 GLU SEQRES 1 B 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 B 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 B 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 B 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 B 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 B 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 B 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 B 92 GLU SEQRES 1 P 15 SER PRO GLN GLY GLY GLY PRO TRP ASP SER VAL ALA ARG SEQRES 2 P 15 VAL LEU HET CA A 801 1 HET CA A 802 1 HET GOL A 803 6 HET GOL A 804 6 HET GOL A 805 6 HET GOL A 806 6 HET GOL A 807 6 HET CA B 801 1 HET CA B 802 1 HET GOL B 803 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CA 4(CA 2+) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 14 HOH *214(H2 O) HELIX 1 AA1 SER A 2 GLY A 20 1 19 HELIX 2 AA2 LYS A 29 LEU A 41 1 13 HELIX 3 AA3 GLU A 50 ASP A 62 1 13 HELIX 4 AA4 ASP A 70 HIS A 86 1 17 HELIX 5 AA5 GLU A 87 PHE A 89 5 3 HELIX 6 AA6 SER B 2 GLY B 20 1 19 HELIX 7 AA7 LYS B 29 LEU B 41 1 13 HELIX 8 AA8 GLU B 50 ASP B 62 1 13 HELIX 9 AA9 ASP B 70 CYS B 85 1 16 HELIX 10 AB1 HIS B 86 PHE B 89 5 4 LINK O SER A 19 CA CA A 801 1555 1555 2.33 LINK O GLU A 22 CA CA A 801 1555 1555 2.29 LINK O ASP A 24 CA CA A 801 1555 1555 2.42 LINK O LYS A 27 CA CA A 801 1555 1555 2.33 LINK OE1 GLU A 32 CA CA A 801 1555 1555 2.42 LINK OE2 GLU A 32 CA CA A 801 1555 1555 2.60 LINK OD1 ASP A 62 CA CA A 802 1555 1555 2.30 LINK OD1 ASP A 64 CA CA A 802 1555 1555 2.35 LINK OD1 ASP A 66 CA CA A 802 1555 1555 2.33 LINK O GLU A 68 CA CA A 802 1555 1555 2.30 LINK OE1 GLU A 73 CA CA A 802 1555 1555 2.45 LINK OE2 GLU A 73 CA CA A 802 1555 1555 2.60 LINK CA CA A 801 O HOH A 912 1555 1555 2.39 LINK CA CA A 802 O HOH A 948 1555 1555 2.41 LINK O SER B 19 CA CA B 801 1555 1555 2.34 LINK O GLU B 22 CA CA B 801 1555 1555 2.30 LINK O ASP B 24 CA CA B 801 1555 1555 2.42 LINK O LYS B 27 CA CA B 801 1555 1555 2.33 LINK OE1 GLU B 32 CA CA B 801 1555 1555 2.44 LINK OE2 GLU B 32 CA CA B 801 1555 1555 2.61 LINK OD1 ASP B 62 CA CA B 802 1555 1555 2.32 LINK OD1 ASP B 64 CA CA B 802 1555 1555 2.32 LINK OD1 ASP B 66 CA CA B 802 1555 1555 2.38 LINK O GLU B 68 CA CA B 802 1555 1555 2.27 LINK OE1 GLU B 73 CA CA B 802 1555 1555 2.43 LINK OE2 GLU B 73 CA CA B 802 1555 1555 2.61 LINK CA CA B 801 O HOH B 913 1555 1555 2.40 LINK CA CA B 802 O HOH B 948 1555 1555 2.46 CISPEP 1 GLY P 1 PRO P 2 0 2.21 CISPEP 2 GLY P 1 PRO P 2 0 -2.06 SITE 1 AC1 6 SER A 19 GLU A 22 ASP A 24 LYS A 27 SITE 2 AC1 6 GLU A 32 HOH A 912 SITE 1 AC2 6 ASP A 62 ASP A 64 ASP A 66 GLU A 68 SITE 2 AC2 6 GLU A 73 HOH A 948 SITE 1 AC3 4 LYS A 49 GLU A 50 GLY B 65 ASP B 66 SITE 1 AC4 5 MET A 80 THR A 83 HOH A 953 HOH A 980 SITE 2 AC4 5 HOH B 927 SITE 1 AC5 4 GLU A 22 GLY A 23 GOL A 806 HOH A 911 SITE 1 AC6 5 GLY A 23 GOL A 805 HOH A 902 HOH A 910 SITE 2 AC6 5 HOH A 977 SITE 1 AC7 9 LYS A 30 SER A 31 LYS A 34 GLN A 51 SITE 2 AC7 9 VAL A 54 HOH A 901 HOH A 950 HOH A 991 SITE 3 AC7 9 HOH B 938 SITE 1 AC8 6 SER B 19 GLU B 22 ASP B 24 LYS B 27 SITE 2 AC8 6 GLU B 32 HOH B 913 SITE 1 AC9 6 ASP B 62 ASP B 64 ASP B 66 GLU B 68 SITE 2 AC9 6 GLU B 73 HOH B 948 SITE 1 AD1 7 LYS B 30 SER B 31 LYS B 34 GLN B 51 SITE 2 AD1 7 HOH B 903 HOH B 947 HOH B 964 CRYST1 35.089 59.824 47.563 90.00 111.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028499 0.000000 0.011311 0.00000 SCALE2 0.000000 0.016716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022620 0.00000