HEADER HYDROLASE 14-AUG-15 5D7P TITLE CRYSTAL STRUCTURE OF HUMAN SIRT2 IN COMPLEX WITH ADPR AND EX-243 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 56-356; COMPND 5 SYNONYM: SIRTUIN 2, REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE COMPND 6 PROTEIN 2; COMPND 7 EC: 3.5.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: GLY1 ORIGINATES FROM TEV CLEAVAGE SITE HIS2/MET3 COMPND 10 ORIGINATE FROM NDEI RESTRICTION SITE OF THE VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HUMAN SIRTUIN 2, INHIBITOR COMPLEX, DEACYLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.RUMPF,S.GERHARDT,O.EINSLE,M.JUNG REVDAT 3 10-JAN-24 5D7P 1 HETSYN REVDAT 2 09-DEC-15 5D7P 1 JRNL REVDAT 1 02-DEC-15 5D7P 0 JRNL AUTH T.RUMPF,S.GERHARDT,O.EINSLE,M.JUNG JRNL TITL SEEDING FOR SIRTUINS: MICROSEED MATRIX SEEDING TO OBTAIN JRNL TITL 2 CRYSTALS OF HUMAN SIRT3 AND SIRT2 SUITABLE FOR SOAKING. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 1498 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26625292 JRNL DOI 10.1107/S2053230X15019986 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 63026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5067 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4778 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6860 ; 1.340 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11055 ; 0.791 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.706 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;33.387 ;23.657 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 878 ;13.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.582 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5809 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1137 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 1.296 ; 2.766 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2405 ; 1.295 ; 2.765 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3005 ; 2.103 ; 4.138 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3006 ; 2.103 ; 4.139 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2661 ; 1.514 ; 3.061 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2661 ; 1.514 ; 3.061 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3854 ; 2.550 ; 4.496 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5804 ; 4.530 ;22.997 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5710 ; 4.465 ;22.838 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2817 -16.5646 -24.0209 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0309 REMARK 3 T33: 0.0195 T12: 0.0061 REMARK 3 T13: 0.0032 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4000 L22: 0.2025 REMARK 3 L33: 0.7046 L12: 0.1313 REMARK 3 L13: -0.4082 L23: 0.0681 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.0459 S13: 0.0093 REMARK 3 S21: 0.0599 S22: 0.0037 S23: 0.0070 REMARK 3 S31: 0.0163 S32: 0.1021 S33: -0.0345 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 400 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3319 -16.8469 -59.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.1068 REMARK 3 T33: 0.0335 T12: 0.0074 REMARK 3 T13: 0.0098 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.2806 L22: 0.6322 REMARK 3 L33: 0.5648 L12: -0.0270 REMARK 3 L13: 0.0784 L23: 0.5513 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.1102 S13: -0.0849 REMARK 3 S21: -0.0614 S22: 0.0789 S23: -0.0613 REMARK 3 S31: -0.0786 S32: 0.0528 S33: -0.0744 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000211691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 39.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5D7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % (W/V) PEG 10000, 0.1 M BIS-TRIS, REMARK 280 PH 5.75, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.24800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.10300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.78900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.10300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.24800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.78900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 SER A 356 REMARK 465 GLY B 53 REMARK 465 HIS B 54 REMARK 465 MET B 55 REMARK 465 GLN B 355 REMARK 465 SER B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -44.61 71.15 REMARK 500 CYS A 200 -73.67 -95.05 REMARK 500 ASP A 231 36.21 -79.06 REMARK 500 TYR A 315 -8.38 -143.70 REMARK 500 ARG A 316 -4.59 -154.36 REMARK 500 SER B 100 -47.60 73.27 REMARK 500 CYS B 200 -68.89 -124.59 REMARK 500 ASP B 231 35.59 -76.44 REMARK 500 ARG B 316 -5.14 -151.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 105.0 REMARK 620 3 CYS A 221 SG 104.4 114.0 REMARK 620 4 CYS A 224 SG 90.8 124.9 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 195 SG REMARK 620 2 CYS B 200 SG 113.0 REMARK 620 3 CYS B 221 SG 109.8 112.4 REMARK 620 4 CYS B 224 SG 92.5 117.0 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCZ A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCZ A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCZ B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCZ B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 405 DBREF 5D7P A 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 DBREF 5D7P B 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 SEQADV 5D7P GLY A 53 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7P HIS A 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7P MET A 55 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7P GLY B 53 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7P HIS B 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7P MET B 55 UNP Q8IXJ6 EXPRESSION TAG SEQRES 1 A 304 GLY HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU SEQRES 2 A 304 GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG SEQRES 3 A 304 VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA SEQRES 4 A 304 GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR SEQRES 5 A 304 ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA SEQRES 6 A 304 ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO SEQRES 7 A 304 PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE SEQRES 8 A 304 LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS SEQRES 9 A 304 ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE SEQRES 10 A 304 ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP SEQRES 11 A 304 LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS SEQRES 12 A 304 VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP SEQRES 13 A 304 MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS SEQRES 14 A 304 GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE SEQRES 15 A 304 PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET SEQRES 16 A 304 GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET SEQRES 17 A 304 GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SEQRES 18 A 304 SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN SEQRES 19 A 304 LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET SEQRES 20 A 304 ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS SEQRES 21 A 304 LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP SEQRES 22 A 304 GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS SEQRES 23 A 304 LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER SEQRES 24 A 304 ILE ASP ALA GLN SER SEQRES 1 B 304 GLY HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU SEQRES 2 B 304 GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG SEQRES 3 B 304 VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA SEQRES 4 B 304 GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR SEQRES 5 B 304 ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA SEQRES 6 B 304 ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO SEQRES 7 B 304 PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE SEQRES 8 B 304 LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS SEQRES 9 B 304 ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE SEQRES 10 B 304 ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP SEQRES 11 B 304 LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS SEQRES 12 B 304 VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP SEQRES 13 B 304 MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS SEQRES 14 B 304 GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE SEQRES 15 B 304 PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET SEQRES 16 B 304 GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET SEQRES 17 B 304 GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SEQRES 18 B 304 SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN SEQRES 19 B 304 LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET SEQRES 20 B 304 ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS SEQRES 21 B 304 LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP SEQRES 22 B 304 GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS SEQRES 23 B 304 LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER SEQRES 24 B 304 ILE ASP ALA GLN SER HET ZN A 401 1 HET AR6 A 402 36 HET OCZ A 403 17 HET OCZ A 404 17 HET ZN B 401 1 HET AR6 B 402 36 HET OCZ B 403 17 HET OCZ B 404 17 HET PEG B 405 7 HETNAM ZN ZINC ION HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM OCZ (1S)-6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-1- HETNAM 2 OCZ CARBOXAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AR6 2(C15 H23 N5 O14 P2) FORMUL 5 OCZ 4(C13 H13 CL N2 O) FORMUL 11 PEG C4 H10 O3 FORMUL 12 HOH *289(H2 O) HELIX 1 AA1 THR A 63 SER A 73 1 11 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLY A 102 ASN A 106 5 5 HELIX 4 AA4 LEU A 107 HIS A 111 5 5 HELIX 5 AA5 TYR A 114 PHE A 119 5 6 HELIX 6 AA6 GLU A 120 HIS A 127 1 8 HELIX 7 AA7 PRO A 128 TYR A 139 1 12 HELIX 8 AA8 THR A 146 LYS A 158 1 13 HELIX 9 AA9 THR A 171 ALA A 176 1 6 HELIX 10 AB1 GLU A 179 GLU A 181 5 3 HELIX 11 AB2 LEU A 206 SER A 215 1 10 HELIX 12 AB3 PRO A 240 PHE A 251 1 12 HELIX 13 AB4 PRO A 268 ALA A 270 5 3 HELIX 14 AB5 SER A 271 ALA A 276 1 6 HELIX 15 AB6 GLU A 323 GLY A 336 1 14 HELIX 16 AB7 TRP A 337 ALA A 354 1 18 HELIX 17 AB8 THR B 63 GLN B 72 1 10 HELIX 18 AB9 ALA B 85 GLY B 92 5 8 HELIX 19 AC1 GLY B 102 ASN B 106 5 5 HELIX 20 AC2 LEU B 107 HIS B 111 5 5 HELIX 21 AC3 TYR B 114 PHE B 119 5 6 HELIX 22 AC4 GLU B 120 HIS B 127 1 8 HELIX 23 AC5 PRO B 128 TYR B 139 1 12 HELIX 24 AC6 THR B 146 LYS B 158 1 13 HELIX 25 AC7 THR B 171 ALA B 176 1 6 HELIX 26 AC8 GLU B 179 GLU B 181 5 3 HELIX 27 AC9 LEU B 206 PHE B 214 1 9 HELIX 28 AD1 PRO B 240 PHE B 251 1 12 HELIX 29 AD2 PRO B 268 ALA B 276 5 9 HELIX 30 AD3 GLU B 323 LEU B 335 1 13 HELIX 31 AD4 TRP B 337 ALA B 354 1 18 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N CYS A 164 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N LEU A 82 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 SHEET 1 AA3 6 LEU B 183 GLU B 185 0 SHEET 2 AA3 6 LEU B 161 THR B 166 1 N THR B 166 O VAL B 184 SHEET 3 AA3 6 VAL B 79 VAL B 83 1 N CYS B 81 O TYR B 165 SHEET 4 AA3 6 LEU B 256 MET B 260 1 O LEU B 258 N LEU B 82 SHEET 5 AA3 6 ARG B 282 ASN B 286 1 O LEU B 283 N VAL B 259 SHEET 6 AA3 6 ASP B 317 LEU B 321 1 O TRP B 320 N LEU B 284 SHEET 1 AA4 3 GLU B 203 PRO B 205 0 SHEET 2 AA4 3 GLY B 188 CYS B 195 -1 N SER B 193 O TYR B 204 SHEET 3 AA4 3 VAL B 228 ILE B 232 -1 O ASP B 231 N THR B 192 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.34 LINK SG CYS B 195 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 200 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 224 ZN ZN B 401 1555 1555 2.34 CISPEP 1 GLN A 267 PRO A 268 0 0.23 CISPEP 2 GLN B 267 PRO B 268 0 -1.39 SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC2 26 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC2 26 ASP A 95 PHE A 96 ARG A 97 TYR A 104 SITE 3 AC2 26 GLN A 167 HIS A 187 PHE A 235 GLY A 261 SITE 4 AC2 26 THR A 262 SER A 263 VAL A 266 ASN A 286 SITE 5 AC2 26 LYS A 287 GLU A 288 GLY A 322 GLU A 323 SITE 6 AC2 26 CYS A 324 OCZ A 404 HOH A 537 HOH A 543 SITE 7 AC2 26 HOH A 545 HOH A 566 SITE 1 AC3 8 PHE A 131 LEU A 138 TYR A 139 PRO A 140 SITE 2 AC3 8 GLY A 141 PHE A 190 OCZ A 404 HOH A 551 SITE 1 AC4 11 PRO A 94 PHE A 96 PHE A 119 GLN A 167 SITE 2 AC4 11 ASN A 168 ILE A 169 ASP A 170 ILE A 232 SITE 3 AC4 11 AR6 A 402 OCZ A 403 HOH A 558 SITE 1 AC5 4 CYS B 195 CYS B 200 CYS B 221 CYS B 224 SITE 1 AC6 25 GLY B 84 ALA B 85 GLY B 86 THR B 89 SITE 2 AC6 25 ASP B 95 PHE B 96 ARG B 97 TYR B 104 SITE 3 AC6 25 GLN B 167 HIS B 187 PHE B 235 GLY B 261 SITE 4 AC6 25 THR B 262 SER B 263 VAL B 266 ASN B 286 SITE 5 AC6 25 LYS B 287 GLU B 288 GLY B 322 GLU B 323 SITE 6 AC6 25 CYS B 324 OCZ B 404 HOH B 504 HOH B 507 SITE 7 AC6 25 HOH B 521 SITE 1 AC7 7 PHE B 131 ALA B 135 LEU B 138 TYR B 139 SITE 2 AC7 7 GLY B 141 PHE B 190 OCZ B 404 SITE 1 AC8 10 PHE B 96 PHE B 119 GLN B 167 ASN B 168 SITE 2 AC8 10 ILE B 169 ASP B 170 ILE B 232 AR6 B 402 SITE 3 AC8 10 OCZ B 403 HOH B 569 SITE 1 AC9 8 THR B 89 ILE B 93 PRO B 94 ASP B 95 SITE 2 AC9 8 SER B 98 LYS B 287 HOH B 503 HOH B 529 CRYST1 76.496 77.578 114.206 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008756 0.00000