HEADER HYDROLASE 14-AUG-15 5D7W TITLE CRYSTAL STRUCTURE OF SERRALYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERRALYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-487; COMPND 5 SYNONYM: EXTRACELLULAR METALLOPROTEINASE,ZINC PROTEINASE; COMPND 6 EC: 3.4.24.40; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: SERRATIA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 613 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,T.RAN,D.Q.XU,W.WANG REVDAT 3 08-NOV-23 5D7W 1 LINK REVDAT 2 18-DEC-19 5D7W 1 AUTHOR JRNL REMARK REVDAT 1 13-JAN-16 5D7W 0 JRNL AUTH D.WU,T.RAN,W.WANG,D.XU JRNL TITL STRUCTURE OF A THERMOSTABLE SERRALYSIN FROM SERRATIA SP. JRNL TITL 2 FS14 AT 1.1 ANGSTROM RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 10 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26750478 JRNL DOI 10.1107/S2053230X15023092 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 273145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 13783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6314 - 3.4082 0.93 8572 445 0.1502 0.1589 REMARK 3 2 3.4082 - 2.7075 1.00 8906 440 0.1616 0.1711 REMARK 3 3 2.7075 - 2.3659 1.00 8841 430 0.1619 0.1799 REMARK 3 4 2.3659 - 2.1499 1.00 8812 447 0.1531 0.1754 REMARK 3 5 2.1499 - 1.9959 1.00 8776 446 0.1532 0.1501 REMARK 3 6 1.9959 - 1.8783 1.00 8745 455 0.1626 0.1722 REMARK 3 7 1.8783 - 1.7843 1.00 8696 477 0.1603 0.1703 REMARK 3 8 1.7843 - 1.7067 1.00 8704 443 0.1593 0.1628 REMARK 3 9 1.7067 - 1.6410 1.00 8717 455 0.1627 0.1849 REMARK 3 10 1.6410 - 1.5844 1.00 8683 464 0.1656 0.1607 REMARK 3 11 1.5844 - 1.5349 1.00 8675 449 0.1687 0.1858 REMARK 3 12 1.5349 - 1.4911 1.00 8707 443 0.1730 0.1898 REMARK 3 13 1.4911 - 1.4518 1.00 8604 483 0.1789 0.1988 REMARK 3 14 1.4518 - 1.4164 1.00 8600 505 0.1861 0.1950 REMARK 3 15 1.4164 - 1.3842 1.00 8696 463 0.1865 0.2014 REMARK 3 16 1.3842 - 1.3548 1.00 8609 475 0.1959 0.2111 REMARK 3 17 1.3548 - 1.3277 1.00 8623 457 0.2004 0.1944 REMARK 3 18 1.3277 - 1.3026 1.00 8659 442 0.2004 0.2058 REMARK 3 19 1.3026 - 1.2794 1.00 8579 478 0.2084 0.2262 REMARK 3 20 1.2794 - 1.2577 1.00 8636 484 0.2170 0.2213 REMARK 3 21 1.2577 - 1.2374 1.00 8569 483 0.2220 0.2439 REMARK 3 22 1.2374 - 1.2184 1.00 8622 452 0.2248 0.2256 REMARK 3 23 1.2184 - 1.2004 1.00 8673 421 0.2303 0.2199 REMARK 3 24 1.2004 - 1.1835 1.00 8554 505 0.2418 0.2410 REMARK 3 25 1.1835 - 1.1676 1.00 8592 479 0.2487 0.2699 REMARK 3 26 1.1676 - 1.1524 1.00 8588 443 0.2547 0.2511 REMARK 3 27 1.1524 - 1.1380 1.00 8612 451 0.2591 0.2579 REMARK 3 28 1.1380 - 1.1243 1.00 8643 440 0.2671 0.2999 REMARK 3 29 1.1243 - 1.1112 1.00 8523 497 0.2781 0.2857 REMARK 3 30 1.1112 - 1.0987 0.94 8146 431 0.3012 0.3039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3791 REMARK 3 ANGLE : 1.019 5170 REMARK 3 CHIRALITY : 0.044 535 REMARK 3 PLANARITY : 0.005 707 REMARK 3 DIHEDRAL : 13.060 1306 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 273151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.010 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.82 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4I35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000,AMMONIUM SULFATE,SODIUM REMARK 280 CITRATE, PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1057 O HOH A 1084 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 366 CB GLU A 366 CG 0.125 REMARK 500 GLU A 366 CG GLU A 366 CD 0.161 REMARK 500 GLU A 366 CD GLU A 366 OE1 0.087 REMARK 500 GLU A 366 CD GLU A 366 OE2 -0.110 REMARK 500 GLY A 387 C ALA A 388 N 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 366 CB - CG - CD ANGL. DEV. = 16.5 DEGREES REMARK 500 GLU A 366 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ALA A 388 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 121 -8.97 -144.68 REMARK 500 SER A 379 10.48 -141.31 REMARK 500 SER A 384 71.73 -152.10 REMARK 500 ALA A 388 53.46 -109.24 REMARK 500 ASP A 394 40.74 -149.77 REMARK 500 ILE A 399 -59.51 -126.56 REMARK 500 PHE A 416 -73.46 -72.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 176 NE2 REMARK 620 2 HIS A 180 NE2 97.6 REMARK 620 3 HIS A 186 NE2 114.8 98.5 REMARK 620 4 TYR A 216 OH 81.4 175.4 86.0 REMARK 620 5 HOH A 648 O 114.7 101.1 123.1 75.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 253 O REMARK 620 2 GLY A 255 O 92.5 REMARK 620 3 THR A 257 OG1 87.7 77.5 REMARK 620 4 ASP A 285 OD1 80.9 153.6 127.3 REMARK 620 5 ASP A 285 OD2 90.9 154.0 76.9 52.3 REMARK 620 6 GLY A 287 O 85.3 81.3 157.3 72.7 124.7 REMARK 620 7 ASP A 290 OD1 171.0 87.8 83.5 102.7 85.0 103.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 288 O REMARK 620 2 ASP A 290 OD2 84.4 REMARK 620 3 THR A 327 O 168.1 96.7 REMARK 620 4 GLU A 329 OE1 83.3 84.4 85.0 REMARK 620 5 GLU A 329 OE2 87.9 137.0 83.2 52.6 REMARK 620 6 HOH A 839 O 104.3 75.2 87.4 157.3 147.2 REMARK 620 7 HOH A1004 O 87.3 148.0 97.6 125.3 73.3 77.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 334 O REMARK 620 2 GLY A 336 O 97.0 REMARK 620 3 ASP A 338 OD2 84.7 85.4 REMARK 620 4 GLY A 351 O 85.6 175.5 91.3 REMARK 620 5 ALA A 353 O 82.0 83.2 161.2 100.8 REMARK 620 6 ASP A 356 OD1 169.0 81.1 84.4 95.6 108.4 REMARK 620 7 ASP A 356 OD2 142.4 112.2 119.6 67.0 78.7 46.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 343 O REMARK 620 2 ALA A 345 O 85.9 REMARK 620 3 ASN A 347 OD1 84.4 81.0 REMARK 620 4 GLY A 360 O 85.5 165.4 86.4 REMARK 620 5 GLY A 362 O 88.3 87.8 167.1 103.7 REMARK 620 6 ASP A 365 OD1 165.8 83.6 84.5 102.7 100.7 REMARK 620 7 ASP A 365 OD2 145.2 123.5 115.7 68.9 76.0 48.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 352 O REMARK 620 2 GLY A 354 O 107.0 REMARK 620 3 ASP A 356 OD2 80.5 81.5 REMARK 620 4 GLY A 369 O 77.8 173.0 94.5 REMARK 620 5 ALA A 371 O 82.8 79.2 149.4 106.8 REMARK 620 6 ASP A 374 OD1 155.9 84.5 80.4 89.1 120.7 REMARK 620 7 ASP A 374 OD2 137.3 108.8 127.2 69.1 81.7 50.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 361 O REMARK 620 2 GLY A 363 O 116.6 REMARK 620 3 ASP A 365 OD2 87.2 100.2 REMARK 620 4 ASP A 383 O 92.2 90.2 168.6 REMARK 620 5 ASP A 390 OD1 156.6 86.8 89.1 86.9 REMARK 620 6 ASP A 390 OD2 114.2 127.8 93.0 76.8 42.9 REMARK 620 7 HOH A 607 O 68.7 173.8 82.8 86.3 87.9 46.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 370 O REMARK 620 2 GLY A 372 O 117.4 REMARK 620 3 ASP A 374 OD2 86.2 88.4 REMARK 620 4 ASP A 400 OD1 160.6 81.8 97.9 REMARK 620 5 HOH A 830 O 90.6 96.0 175.4 84.2 REMARK 620 6 HOH A 947 O 83.5 159.0 94.0 77.3 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 DBREF 5D7W A 4 471 UNP P23694 PRZN_SERMA 20 487 SEQADV 5D7W ALA A 3 UNP P23694 EXPRESSION TAG SEQADV 5D7W LEU A 250 UNP P23694 PRO 266 ENGINEERED MUTATION SEQRES 1 A 469 ALA THR GLY TYR ASP ALA VAL ASP ASP LEU LEU HIS TYR SEQRES 2 A 469 HIS GLU ARG GLY ASN GLY ILE GLN ILE ASN GLY LYS ASP SEQRES 3 A 469 SER PHE SER ASN GLU GLN ALA GLY LEU PHE ILE THR ARG SEQRES 4 A 469 GLU ASN GLN THR TRP ASN GLY TYR LYS VAL PHE GLY GLN SEQRES 5 A 469 PRO VAL LYS LEU THR PHE SER PHE PRO ASP TYR LYS PHE SEQRES 6 A 469 SER SER THR ASN VAL ALA GLY ASP THR GLY LEU SER LYS SEQRES 7 A 469 PHE SER ALA GLU GLN GLN GLN GLN ALA LYS LEU SER LEU SEQRES 8 A 469 GLN SER TRP ALA ASP VAL ALA ASN ILE THR PHE THR GLU SEQRES 9 A 469 VAL ALA ALA GLY GLN LYS ALA ASN ILE THR PHE GLY ASN SEQRES 10 A 469 TYR SER GLN ASP ARG PRO GLY HIS TYR ASP TYR GLY THR SEQRES 11 A 469 GLN ALA TYR ALA PHE LEU PRO ASN THR ILE TRP GLN GLY SEQRES 12 A 469 GLN ASP LEU GLY GLY GLN THR TRP TYR ASN VAL ASN GLN SEQRES 13 A 469 SER ASN VAL LYS HIS PRO ALA THR GLU ASP TYR GLY ARG SEQRES 14 A 469 GLN THR PHE THR HIS GLU ILE GLY HIS ALA LEU GLY LEU SEQRES 15 A 469 SER HIS PRO GLY ASP TYR ASN ALA GLY GLU GLY ASN PRO SEQRES 16 A 469 THR TYR ASN ASP VAL THR TYR ALA GLU ASP THR ARG GLN SEQRES 17 A 469 PHE SER LEU MET SER TYR TRP SER GLU THR ASN THR GLY SEQRES 18 A 469 GLY ASP ASN GLY GLY HIS TYR ALA ALA ALA PRO LEU LEU SEQRES 19 A 469 ASP ASP ILE ALA ALA ILE GLN HIS LEU TYR GLY ALA ASN SEQRES 20 A 469 LEU SER THR ARG THR GLY ASP THR VAL TYR GLY PHE ASN SEQRES 21 A 469 SER ASN THR GLY ARG ASP PHE LEU SER THR THR SER ASN SEQRES 22 A 469 SER GLN LYS VAL ILE PHE ALA ALA TRP ASP ALA GLY GLY SEQRES 23 A 469 ASN ASP THR PHE ASP PHE SER GLY TYR THR ALA ASN GLN SEQRES 24 A 469 ARG ILE ASN LEU ASN GLU LYS SER PHE SER ASP VAL GLY SEQRES 25 A 469 GLY LEU LYS GLY ASN VAL SER ILE ALA ALA GLY VAL THR SEQRES 26 A 469 ILE GLU ASN ALA ILE GLY GLY SER GLY ASN ASP VAL ILE SEQRES 27 A 469 VAL GLY ASN ALA ALA ASN ASN VAL LEU LYS GLY GLY ALA SEQRES 28 A 469 GLY ASN ASP VAL LEU PHE GLY GLY GLY GLY ALA ASP GLU SEQRES 29 A 469 LEU TRP GLY GLY ALA GLY LYS ASP ILE PHE VAL PHE SER SEQRES 30 A 469 ALA ALA SER ASP SER ALA PRO GLY ALA SER ASP TRP ILE SEQRES 31 A 469 ARG ASP PHE GLN LYS GLY ILE ASP LYS ILE ASP LEU SER SEQRES 32 A 469 PHE PHE ASN LYS GLU ALA ASN SER SER ASP PHE ILE HIS SEQRES 33 A 469 PHE VAL ASP HIS PHE SER GLY THR ALA GLY GLU ALA LEU SEQRES 34 A 469 LEU SER TYR ASN ALA SER SER ASN VAL THR ASP LEU SER SEQRES 35 A 469 VAL ASN ILE GLY GLY HIS GLN ALA PRO ASP PHE LEU VAL SEQRES 36 A 469 LYS ILE VAL GLY GLN VAL ASP VAL ALA THR ASP PHE ILE SEQRES 37 A 469 VAL HET ZN A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HET GOL A 509 6 HET GOL A 510 6 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA 7(CA 2+) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *696(H2 O) HELIX 1 AA1 THR A 4 HIS A 14 1 11 HELIX 2 AA2 SER A 31 THR A 40 1 10 HELIX 3 AA3 SER A 82 ALA A 100 1 19 HELIX 4 AA4 GLN A 158 HIS A 163 1 6 HELIX 5 AA5 GLU A 167 GLY A 183 1 17 HELIX 6 AA6 TYR A 190 GLU A 194 5 5 HELIX 7 AA7 THR A 198 VAL A 202 5 5 HELIX 8 AA8 SER A 218 GLY A 223 5 6 HELIX 9 AA9 LEU A 235 GLY A 247 1 13 HELIX 10 AB1 ARG A 267 SER A 271 5 5 HELIX 11 AB2 ALA A 380 ALA A 385 5 6 HELIX 12 AB3 LEU A 404 ASN A 412 1 9 SHEET 1 AA1 2 GLN A 23 ILE A 24 0 SHEET 2 AA1 2 LYS A 27 ASP A 28 -1 O LYS A 27 N ILE A 24 SHEET 1 AA2 5 ILE A 102 GLU A 106 0 SHEET 2 AA2 5 VAL A 56 SER A 61 1 N LEU A 58 O THR A 103 SHEET 3 AA2 5 ILE A 115 TYR A 120 1 O ILE A 115 N THR A 59 SHEET 4 AA2 5 GLN A 151 ASN A 155 1 O TYR A 154 N TYR A 120 SHEET 5 AA2 5 ALA A 134 ALA A 136 -1 N TYR A 135 O TRP A 153 SHEET 1 AA3 2 GLN A 122 ARG A 124 0 SHEET 2 AA3 2 HIS A 127 TYR A 128 -1 O HIS A 127 N ARG A 124 SHEET 1 AA4 2 ILE A 142 TRP A 143 0 SHEET 2 AA4 2 GLN A 146 ASP A 147 -1 O GLN A 146 N TRP A 143 SHEET 1 AA510 VAL A 258 GLY A 260 0 SHEET 2 AA510 THR A 291 ASP A 293 1 O THR A 291 N TYR A 259 SHEET 3 AA510 ASN A 330 ILE A 332 1 O ILE A 332 N PHE A 292 SHEET 4 AA510 VAL A 348 LYS A 350 1 O LYS A 350 N ALA A 331 SHEET 5 AA510 GLU A 366 TRP A 368 1 O TRP A 368 N LEU A 349 SHEET 6 AA510 TRP A 391 ILE A 392 1 O TRP A 391 N LEU A 367 SHEET 7 AA510 PHE A 455 VAL A 460 1 O VAL A 460 N ILE A 392 SHEET 8 AA510 VAL A 440 VAL A 445 -1 N THR A 441 O ILE A 459 SHEET 9 AA510 GLU A 429 ASN A 435 -1 N LEU A 431 O SER A 444 SHEET 10 AA510 HIS A 418 PHE A 419 1 N HIS A 418 O ALA A 430 SHEET 1 AA6 3 PHE A 281 ALA A 283 0 SHEET 2 AA6 3 VAL A 320 ILE A 322 1 O SER A 321 N ALA A 283 SHEET 3 AA6 3 PHE A 310 SER A 311 -1 N SER A 311 O VAL A 320 SHEET 1 AA7 6 ARG A 302 ASN A 304 0 SHEET 2 AA7 6 VAL A 339 VAL A 341 1 O VAL A 341 N ILE A 303 SHEET 3 AA7 6 VAL A 357 PHE A 359 1 O VAL A 357 N ILE A 340 SHEET 4 AA7 6 ILE A 375 VAL A 377 1 O VAL A 377 N LEU A 358 SHEET 5 AA7 6 LYS A 401 ASP A 403 1 O ASP A 403 N PHE A 376 SHEET 6 AA7 6 PHE A 469 ILE A 470 1 O ILE A 470 N ILE A 402 LINK NE2 HIS A 176 ZN ZN A 501 1555 1555 2.03 LINK NE2 HIS A 180 ZN ZN A 501 1555 1555 2.10 LINK NE2 HIS A 186 ZN ZN A 501 1555 1555 2.02 LINK OH TYR A 216 ZN ZN A 501 1555 1555 2.66 LINK O ARG A 253 CA CA A 502 1555 1555 2.29 LINK O GLY A 255 CA CA A 502 1555 1555 2.37 LINK OG1 THR A 257 CA CA A 502 1555 1555 2.46 LINK OD1 ASP A 285 CA CA A 502 1555 1555 2.46 LINK OD2 ASP A 285 CA CA A 502 1555 1555 2.53 LINK O GLY A 287 CA CA A 502 1555 1555 2.30 LINK O GLY A 288 CA CA A 503 1555 1555 2.33 LINK OD1 ASP A 290 CA CA A 502 1555 1555 2.31 LINK OD2 ASP A 290 CA CA A 503 1555 1555 2.37 LINK O THR A 327 CA CA A 503 1555 1555 2.34 LINK OE1 GLU A 329 CA CA A 503 1555 1555 2.48 LINK OE2 GLU A 329 CA CA A 503 1555 1555 2.46 LINK O GLY A 334 CA CA A 504 1555 1555 2.34 LINK O GLY A 336 CA CA A 504 1555 1555 2.36 LINK OD2 ASP A 338 CA CA A 504 1555 1555 2.37 LINK O ASN A 343 CA CA A 505 1555 1555 2.35 LINK O ALA A 345 CA CA A 505 1555 1555 2.38 LINK OD1 ASN A 347 CA CA A 505 1555 1555 2.35 LINK O GLY A 351 CA CA A 504 1555 1555 2.33 LINK O GLY A 352 CA CA A 506 1555 1555 2.42 LINK O ALA A 353 CA CA A 504 1555 1555 2.31 LINK O GLY A 354 CA CA A 506 1555 1555 2.39 LINK OD1 ASP A 356 CA CA A 504 1555 1555 2.40 LINK OD2 ASP A 356 CA CA A 504 1555 1555 2.99 LINK OD2 ASP A 356 CA CA A 506 1555 1555 2.35 LINK O GLY A 360 CA CA A 505 1555 1555 2.33 LINK O GLY A 361 CA CA A 508 1555 1555 2.32 LINK O GLY A 362 CA CA A 505 1555 1555 2.28 LINK O GLY A 363 CA CA A 508 1555 1555 2.40 LINK OD1 ASP A 365 CA CA A 505 1555 1555 2.41 LINK OD2 ASP A 365 CA CA A 505 1555 1555 2.82 LINK OD2 ASP A 365 CA CA A 508 1555 1555 2.26 LINK O GLY A 369 CA CA A 506 1555 1555 2.38 LINK O GLY A 370 CA CA A 507 1555 1555 2.43 LINK O ALA A 371 CA CA A 506 1555 1555 2.29 LINK O GLY A 372 CA CA A 507 1555 1555 2.38 LINK OD1 ASP A 374 CA CA A 506 1555 1555 2.38 LINK OD2 ASP A 374 CA CA A 506 1555 1555 2.67 LINK OD2 ASP A 374 CA CA A 507 1555 1555 2.24 LINK O ASP A 383 CA CA A 508 1555 1555 2.21 LINK OD1 ASP A 390 CA CA A 508 1555 1555 2.42 LINK OD2 ASP A 390 CA CA A 508 1555 1555 3.20 LINK OD1 ASP A 400 CA CA A 507 1555 1555 2.55 LINK ZN ZN A 501 O HOH A 648 1555 1555 1.96 LINK CA CA A 503 O HOH A 839 1555 1555 2.36 LINK CA CA A 503 O HOH A1004 1555 1555 2.42 LINK CA CA A 507 O HOH A 830 1555 1555 2.37 LINK CA CA A 507 O HOH A 947 1555 1555 2.78 LINK CA CA A 508 O HOH A 607 1555 1555 2.72 SITE 1 AC1 5 HIS A 176 HIS A 180 HIS A 186 TYR A 216 SITE 2 AC1 5 HOH A 648 SITE 1 AC2 6 ARG A 253 GLY A 255 THR A 257 ASP A 285 SITE 2 AC2 6 GLY A 287 ASP A 290 SITE 1 AC3 6 GLY A 288 ASP A 290 THR A 327 GLU A 329 SITE 2 AC3 6 HOH A 839 HOH A1004 SITE 1 AC4 6 GLY A 334 GLY A 336 ASP A 338 GLY A 351 SITE 2 AC4 6 ALA A 353 ASP A 356 SITE 1 AC5 6 ASN A 343 ALA A 345 ASN A 347 GLY A 360 SITE 2 AC5 6 GLY A 362 ASP A 365 SITE 1 AC6 6 GLY A 352 GLY A 354 ASP A 356 GLY A 369 SITE 2 AC6 6 ALA A 371 ASP A 374 SITE 1 AC7 6 GLY A 370 GLY A 372 ASP A 374 ASP A 400 SITE 2 AC7 6 HOH A 830 HOH A 947 SITE 1 AC8 7 GLY A 361 GLY A 362 GLY A 363 ASP A 365 SITE 2 AC8 7 ASP A 383 ASP A 390 HOH A 607 SITE 1 AC9 10 ASP A 168 HIS A 229 TYR A 230 ALA A 231 SITE 2 AC9 10 ALA A 232 LYS A 278 ILE A 280 HOH A 609 SITE 3 AC9 10 HOH A 640 HOH A 782 SITE 1 AD1 9 THR A 4 ASP A 7 TYR A 130 ASN A 157 SITE 2 AD1 9 SER A 405 LYS A 409 HOH A 605 HOH A 638 SITE 3 AD1 9 HOH A 664 CRYST1 42.300 105.400 151.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006618 0.00000