HEADER RIBOSOMAL PROTEIN 17-AUG-15 5D8H TITLE CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM TITLE 2 METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 50S RIBOSOMAL PROTEIN L10; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 9-221; COMPND 9 SYNONYM: ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG,MJAL10; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: THIOSTREPTON; COMPND 18 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1(BLUE); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PUC18; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMJA23S-74.UC18; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 11 ORGANISM_TAXID: 2190; SOURCE 12 GENE: RPL10, RPLP0, MJ0509; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET-11C; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAP0NTF; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: RPL11, MJ0373; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-11C; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAL11; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: STREPTOMYCES AZUREUS; SOURCE 30 ORGANISM_TAXID: 146537 KEYWDS RIBOSOME, P-STALK, ARCHAEA, ANTIBIOTIC, THIOSTREPTON, RIBOSOMAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER REVDAT 6 24-APR-19 5D8H 1 SEQRES REVDAT 5 10-APR-19 5D8H 1 REMARK DBREF REVDAT 4 21-DEC-16 5D8H 1 REMARK REVDAT 3 14-DEC-16 5D8H 1 SOURCE REVDAT 2 28-SEP-16 5D8H 1 REVDAT 1 24-AUG-16 5D8H 0 JRNL AUTH A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER JRNL TITL CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM JRNL TITL 2 METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5509 - 7.3287 0.98 2598 137 0.2002 0.2402 REMARK 3 2 7.3287 - 5.8208 1.00 2654 140 0.1990 0.1919 REMARK 3 3 5.8208 - 5.0862 1.00 2649 135 0.1708 0.2186 REMARK 3 4 5.0862 - 4.6216 1.00 2672 141 0.1720 0.2164 REMARK 3 5 4.6216 - 4.2906 0.99 2635 139 0.1917 0.2314 REMARK 3 6 4.2906 - 4.0378 1.00 2666 141 0.1874 0.2253 REMARK 3 7 4.0378 - 3.8357 1.00 2626 139 0.1887 0.2276 REMARK 3 8 3.8357 - 3.6688 0.99 2677 144 0.2046 0.2548 REMARK 3 9 3.6688 - 3.5276 1.00 2642 142 0.2121 0.2466 REMARK 3 10 3.5276 - 3.4059 1.00 2643 136 0.2286 0.2443 REMARK 3 11 3.4059 - 3.2995 0.99 2633 141 0.2261 0.3737 REMARK 3 12 3.2995 - 3.2052 0.99 2636 143 0.2204 0.2579 REMARK 3 13 3.2052 - 3.1208 0.99 2625 139 0.2383 0.3535 REMARK 3 14 3.1208 - 3.0447 0.99 2640 137 0.2720 0.2537 REMARK 3 15 3.0447 - 2.9755 0.99 2644 138 0.2947 0.3115 REMARK 3 16 2.9755 - 2.9122 0.99 2648 135 0.3212 0.3141 REMARK 3 17 2.9122 - 2.8539 1.00 2623 136 0.3591 0.3601 REMARK 3 18 2.8539 - 2.8001 0.98 2647 132 0.4038 0.4692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4737 REMARK 3 ANGLE : 1.929 6754 REMARK 3 CHIRALITY : 0.066 840 REMARK 3 PLANARITY : 0.010 577 REMARK 3 DIHEDRAL : 16.004 2035 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 14.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.49 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM TRIS-HCL, PH 7.5, 10% PEG 8000, REMARK 280 20% GLYCEROL, 1 MM TCEP (TRIS(2-CARBOXYETHYL)PHOSPHINE), 0.125 REMARK 280 MM CTAB, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.58000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.46500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.58000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.46500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.58000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.46500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.53500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.58000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.46500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES REMARK 400 CLASS. ALL SHARE A MACROCYLIC CORE, CONSISTING OF A REMARK 400 NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO REMARK 400 ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING REMARK 400 THIAZOLES, THIAZOLINES AND OXAZOLES. REMARK 400 HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE THIOSTREPTON IS THIOPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: THIOSTREPTON REMARK 400 CHAIN: D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: Thiostrepton is a hetrocyclic thiopeptide belonging REMARK 400 to the thiocillin family, consisting of four REMARK 400 thiazole, one thiozoline and one piperideine rings. REMARK 400 A modified quinoline linked to main-chain residue 1 REMARK 400 and side-chain of residue 12. Post translational REMARK 400 maturation of thiazole and oxazole containing REMARK 400 antibiotics involves the enzymic condensation of a REMARK 400 Cys or Ser with the alpha-carbonyl of the preceding REMARK 400 amino acid to form a thioether or ether bond, then REMARK 400 dehydration to form a double bond with the alpha- REMARK 400 amino nitrogen. Thiazoline or oxazoline ring are REMARK 400 dehydrogenated to form thiazole or oxazole rings. REMARK 400 the pyridinyl involves the cross-linking of a Ser REMARK 400 and a Cys-Ser pair usually separated by 7 or 8 REMARK 400 residues along the peptide chain. The Ser residues REMARK 400 are dehydrated to didehydroalanines, then bonded REMARK 400 between their beta carbons. The alpha carbonyl of REMARK 400 the Cys condenses with alpha carbon of the first Ser REMARK 400 to form a pyridinyl ring. The ring may be mutiply REMARK 400 dehydrogenated to form a pyridine ring with loss of REMARK 400 the amino nitrogen of the first Ser. The amidation REMARK 400 of Ser-17 probably does not occur by the same REMARK 400 mechanism, oxidative cleavage of glycine, as in REMARK 400 eukaryotes. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 216 REMARK 465 LEU B 217 REMARK 465 LEU B 218 REMARK 465 ALA B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 MSE C 0 REMARK 465 GLU C 159 REMARK 465 GLU C 160 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DHA D 17 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 1310 O HOH A 1430 1.48 REMARK 500 MG MG A 1310 O HOH A 1450 1.49 REMARK 500 MG MG A 1310 O HOH A 1402 1.59 REMARK 500 MG MG A 1310 O HOH A 1458 1.63 REMARK 500 MG MG A 1308 O HOH A 1444 1.67 REMARK 500 MG MG A 1310 O HOH A 1443 1.68 REMARK 500 C7 QUA D 0 N ILE D 1 1.68 REMARK 500 MG MG A 1310 O HOH A 1455 1.69 REMARK 500 O ASP C 44 N TYR C 45 1.76 REMARK 500 O HOH A 1402 O HOH A 1450 1.86 REMARK 500 OP1 A A 1183 O HOH A 1401 1.89 REMARK 500 C11 QUA D 0 CB THR D 12 1.99 REMARK 500 O HOH A 1407 O HOH A 1410 2.09 REMARK 500 N SER D 5 C BB9 D 13 2.09 REMARK 500 O HOH A 1443 O HOH A 1450 2.11 REMARK 500 O6 G A 1223 O HOH A 1402 2.12 REMARK 500 O HOH A 1402 O HOH A 1430 2.13 REMARK 500 O PRO C 18 N GLY C 21 2.13 REMARK 500 C2 QUA D 0 OG1 THR D 12 2.13 REMARK 500 O HOH A 1450 O HOH A 1455 2.14 REMARK 500 O HOH A 1412 O HOH A 1449 2.19 REMARK 500 O6 G A 1164 O HOH A 1403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A1151 P G A1151 OP3 -0.116 REMARK 500 LYS C 41 C THR C 42 N 0.180 REMARK 500 ASP C 44 C TYR C 45 N -0.421 REMARK 500 ALA D 2 C DHA D 3 N 0.169 REMARK 500 BB9 D 11 C THR D 12 N -0.166 REMARK 500 BB9 D 13 C MH6 D 14 N 0.245 REMARK 500 BB9 D 15 C DHA D 16 N 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A1163 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 G A1163 C5 - C6 - O6 ANGL. DEV. = 4.0 DEGREES REMARK 500 A A1179 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 A A1205 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 C A1216 C5 - C4 - N4 ANGL. DEV. = -4.2 DEGREES REMARK 500 C A1224 C5 - C4 - N4 ANGL. DEV. = -4.3 DEGREES REMARK 500 PRO B 123 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PRO C 18 C - N - CD ANGL. DEV. = 13.2 DEGREES REMARK 500 ASN C 30 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ASP C 44 O - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 TYR C 45 C - N - CA ANGL. DEV. = 33.9 DEGREES REMARK 500 GLU C 59 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 GLU C 59 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 THR C 60 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 ARG C 61 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 DHA D 17 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 37 -4.50 81.54 REMARK 500 ASN B 76 62.53 39.80 REMARK 500 ARG B 89 -133.26 61.93 REMARK 500 LYS B 127 159.32 172.89 REMARK 500 LYS B 164 -166.36 -102.68 REMARK 500 ILE C 24 -50.72 -121.48 REMARK 500 GLU C 59 -73.23 -49.14 REMARK 500 ARG C 61 -20.29 90.94 REMARK 500 ARG C 90 -7.94 68.21 REMARK 500 VAL C 94 -61.03 -131.41 REMARK 500 TYR C 153 -74.15 -82.95 REMARK 500 ASP C 154 -25.34 62.34 REMARK 500 SER D 5 76.28 65.12 REMARK 500 DCY D 9 -33.65 -118.87 REMARK 500 TS9 D 10 -77.81 -89.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 121 ALA B 122 -146.88 REMARK 500 ILE B 126 LYS B 127 129.74 REMARK 500 LYS B 164 VAL B 165 143.08 REMARK 500 PRO C 18 PRO C 19 -135.49 REMARK 500 VAL C 94 GLY C 95 30.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1157 O6 REMARK 620 2 HOH A1426 O 122.8 REMARK 620 3 HOH A1452 O 90.6 139.8 REMARK 620 4 HOH A1456 O 127.4 72.8 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1166 O6 REMARK 620 2 HOH A1417 O 68.7 REMARK 620 3 HOH A1405 O 67.6 78.8 REMARK 620 4 HOH A1414 O 70.4 139.1 86.1 REMARK 620 5 HOH A1434 O 152.4 138.4 107.6 82.3 REMARK 620 6 HOH A1429 O 82.2 102.3 147.3 71.7 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A1169 OP2 REMARK 620 2 U A1171 OP2 102.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1313 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1179 O3' REMARK 620 2 A A1180 OP2 51.4 REMARK 620 3 A A1180 O5' 53.5 46.9 REMARK 620 4 C A1182 OP1 126.3 79.2 78.8 REMARK 620 5 HOH A1401 O 149.8 118.6 146.2 67.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1180 OP2 REMARK 620 2 C A1182 OP1 112.8 REMARK 620 3 HOH A1432 O 84.8 73.7 REMARK 620 4 HOH A1437 O 162.7 80.4 88.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1183 OP2 REMARK 620 2 U A1204 O4 152.7 REMARK 620 3 HOH A1409 O 129.9 68.3 REMARK 620 4 HOH A1416 O 72.2 88.5 92.3 REMARK 620 5 HOH A1422 O 73.0 86.7 154.9 85.2 REMARK 620 6 HOH A1428 O 114.0 86.1 82.5 173.6 97.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS C 110 O REMARK 620 2 MSE C 113 O 77.9 REMARK 620 3 SER C 115 O 90.9 105.2 REMARK 620 4 HOH C 303 O 87.7 81.6 172.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1420 O REMARK 620 2 HOH A1431 O 88.0 REMARK 620 3 HOH A1440 O 96.4 79.8 REMARK 620 4 HOH A1442 O 172.9 85.3 84.8 REMARK 620 5 HOH A1454 O 93.1 178.8 99.8 93.6 REMARK 620 6 HOH A1403 O 96.2 93.8 165.6 81.9 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1413 O REMARK 620 2 HOH A1424 O 87.0 REMARK 620 3 HOH A1425 O 72.1 80.9 REMARK 620 4 HOH A1439 O 141.7 92.8 70.1 REMARK 620 5 HOH A1448 O 72.2 146.0 67.5 87.9 REMARK 620 6 HOH A1451 O 83.3 102.3 155.1 133.6 101.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1412 O REMARK 620 2 HOH A1436 O 81.5 REMARK 620 3 HOH A1445 O 85.8 164.3 REMARK 620 4 HOH A1446 O 83.6 73.9 113.8 REMARK 620 5 HOH A1449 O 76.6 85.1 83.1 153.0 REMARK 620 6 HOH A1453 O 170.0 91.1 102.5 87.9 109.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1408 O REMARK 620 2 HOH A1427 O 85.5 REMARK 620 3 HOH A1435 O 163.6 103.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1421 O REMARK 620 2 HOH A1438 O 89.0 REMARK 620 3 HOH A1441 O 91.5 163.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues BB9 D 13 REMARK 800 through NH2 D 18 bound to SER D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues BB9 D 6 through REMARK 800 THR D 7 bound to SER D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand BB9 D 6 bound to SER D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand MH6 D 14 bound to SER D REMARK 800 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues DBU D 8 through REMARK 800 BB9 D 11 bound to THR D 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand BB9 D 13 bound to THR D REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand BB9 D 13 bound to THR D REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D6G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX REMARK 900 WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 5COL RELATED DB: PDB REMARK 900 RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII DBREF1 5D8H A 1151 1223 REF NR_077055.1 DBREF2 5D8H A 470491724 1151 1223 DBREF 5D8H B 9 221 UNP P54049 RL10_METJA 9 221 DBREF 5D8H C 0 160 UNP P54030 RL11_METJA 1 161 DBREF 5D8H D 0 18 UNP 5D8H THCL_STRAJ 0 18 SEQADV 5D8H C A 1224 REF 470491724 EXPRESSION TAG SEQADV 5D8H MSE B 9 UNP P54049 VAL 9 ENGINEERED MUTATION SEQRES 1 A 74 G C C U A A G A C A G C G SEQRES 2 A 74 G G G A G G U U G G C U U SEQRES 3 A 74 A G A A G C A G C C A U C SEQRES 4 A 74 C U U U A A A G A G U G C SEQRES 5 A 74 G U A A C A G C U C A C C SEQRES 6 A 74 C G U C G A G G C SEQRES 1 B 213 MSE ALA PRO TRP LYS ILE GLU GLU VAL LYS THR LEU LYS SEQRES 2 B 213 GLY LEU ILE LYS SER LYS PRO VAL VAL ALA ILE VAL ASP SEQRES 3 B 213 MSE MSE ASP VAL PRO ALA PRO GLN LEU GLN GLU ILE ARG SEQRES 4 B 213 ASP LYS ILE ARG ASP LYS VAL LYS LEU ARG MSE SER ARG SEQRES 5 B 213 ASN THR LEU ILE ILE ARG ALA LEU LYS GLU ALA ALA GLU SEQRES 6 B 213 GLU LEU ASN ASN PRO LYS LEU ALA GLU LEU ALA ASN TYR SEQRES 7 B 213 VAL GLU ARG GLY ALA ALA ILE LEU VAL THR ASP MSE ASN SEQRES 8 B 213 PRO PHE LYS LEU TYR LYS LEU LEU GLU GLU ASN LYS SER SEQRES 9 B 213 PRO ALA PRO VAL ARG GLY GLY GLN ILE ALA PRO CYS ASP SEQRES 10 B 213 ILE LYS VAL GLU LYS GLY SER THR GLY MSE PRO PRO GLY SEQRES 11 B 213 PRO PHE LEU GLY GLU LEU LYS SER VAL GLY ILE PRO ALA SEQRES 12 B 213 ALA ILE GLU LYS GLY LYS ILE ALA ILE LYS GLU ASP LYS SEQRES 13 B 213 VAL VAL VAL LYS LYS GLY GLU VAL VAL SER PRO LYS LEU SEQRES 14 B 213 ALA ALA VAL LEU ASP ARG LEU GLY ILE LYS PRO ILE LYS SEQRES 15 B 213 VAL GLY LEU ASN ILE LEU ALA VAL TYR GLU ASP GLY ILE SEQRES 16 B 213 ILE TYR THR PRO ASP VAL LEU LYS VAL ASP GLU GLU LYS SEQRES 17 B 213 LEU LEU ALA ASP ILE SEQRES 1 C 161 MSE ALA LYS GLU VAL VAL GLU VAL LEU VAL THR GLY GLY SEQRES 2 C 161 ARG ALA THR ALA GLY PRO PRO LEU GLY PRO ALA ILE GLY SEQRES 3 C 161 PRO LEU GLY VAL ASN VAL MSE GLN VAL VAL LYS GLU ILE SEQRES 4 C 161 ASN GLU LYS THR LYS ASP TYR GLU GLY MSE GLN VAL PRO SEQRES 5 C 161 VAL LYS VAL ILE VAL ASP THR GLU THR ARG LYS PHE GLU SEQRES 6 C 161 ILE GLU VAL GLY ILE PRO PRO THR THR ALA LEU ILE LYS SEQRES 7 C 161 LYS GLU LEU GLY ILE GLU THR ALA ALA HIS GLU PRO ARG SEQRES 8 C 161 HIS GLU VAL VAL GLY ASN LEU THR LEU GLU GLN VAL ILE SEQRES 9 C 161 LYS ILE ALA LYS MSE LYS LYS ASP ALA MSE LEU SER TYR SEQRES 10 C 161 THR LEU LYS ASN ALA VAL LYS GLU VAL LEU GLY THR CYS SEQRES 11 C 161 GLY SER MSE GLY VAL THR VAL GLU GLY LYS ASP PRO LYS SEQRES 12 C 161 GLU VAL GLN LYS GLU ILE ASP ALA GLY VAL TYR ASP GLU SEQRES 13 C 161 TYR PHE LYS GLU GLU SEQRES 1 D 19 QUA ILE ALA DHA ALA SER BB9 THR DBU DCY TS9 BB9 THR SEQRES 2 D 19 BB9 MH6 BB9 DHA DHA NH2 MODRES 5D8H MSE B 35 MET MODIFIED RESIDUE MODRES 5D8H MSE B 36 MET MODIFIED RESIDUE MODRES 5D8H MSE B 58 MET MODIFIED RESIDUE MODRES 5D8H MSE B 98 MET MODIFIED RESIDUE MODRES 5D8H MSE B 135 MET MODIFIED RESIDUE MODRES 5D8H MSE C 32 MET MODIFIED RESIDUE MODRES 5D8H MSE C 48 MET MODIFIED RESIDUE MODRES 5D8H MSE C 108 MET MODIFIED RESIDUE MODRES 5D8H MSE C 113 MET MODIFIED RESIDUE MODRES 5D8H MSE C 132 MET MODIFIED RESIDUE HET MSE B 9 8 HET MSE B 35 8 HET MSE B 36 8 HET MSE B 58 8 HET MSE B 98 8 HET MSE B 135 8 HET MSE C 32 8 HET MSE C 48 8 HET MSE C 108 8 HET MSE C 113 8 HET MSE C 132 8 HET QUA D 0 16 HET DHA D 3 5 HET BB9 D 6 6 HET DBU D 8 5 HET DCY D 9 6 HET TS9 D 10 9 HET BB9 D 11 6 HET BB9 D 13 5 HET MH6 D 14 4 HET BB9 D 15 6 HET DHA D 16 5 HET DHA D 17 5 HET NH2 D 18 1 HET MG A1301 1 HET MG A1302 1 HET MG A1303 1 HET MG A1304 1 HET MG A1305 1 HET MG A1306 1 HET MG A1307 1 HET MG A1308 1 HET MG A1309 1 HET MG A1310 1 HET NA A1311 1 HET NA A1312 1 HET NA A1313 1 HET TRS A1314 8 HET TRS A1315 8 HET NA B 301 1 HET TRS B 302 8 HET MG C 201 1 HETNAM MSE SELENOMETHIONINE HETNAM QUA 8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID HETNAM DHA 2-AMINO-ACRYLIC ACID HETNAM BB9 (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID HETNAM DBU (2Z)-2-AMINOBUT-2-ENOIC ACID HETNAM DCY D-CYSTEINE HETNAM TS9 (2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID HETNAM MH6 3-HYDROXY-2-IMINOPROPANOIC ACID HETNAM NH2 AMINO GROUP HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN DHA 2,3-DIDEHYDROALANINE HETSYN DBU Z-DEHYDROBUTYRINE HETSYN TRS TRIS BUFFER FORMUL 2 MSE 11(C5 H11 N O2 SE) FORMUL 4 QUA C12 H13 N O4 FORMUL 4 DHA 3(C3 H5 N O2) FORMUL 4 BB9 4(C3 H5 N O2 S) FORMUL 4 DBU C4 H7 N O2 FORMUL 4 DCY C3 H7 N O2 S FORMUL 4 TS9 C6 H13 N O4 FORMUL 4 MH6 C3 H5 N O3 FORMUL 4 NH2 H2 N FORMUL 5 MG 11(MG 2+) FORMUL 15 NA 4(NA 1+) FORMUL 18 TRS 3(C4 H12 N O3 1+) FORMUL 23 HOH *65(H2 O) HELIX 1 AA1 ALA B 10 LYS B 27 1 18 HELIX 2 AA2 PRO B 39 ILE B 50 1 12 HELIX 3 AA3 ARG B 60 LEU B 75 1 16 HELIX 4 AA4 ASN B 77 LEU B 83 1 7 HELIX 5 AA5 ALA B 84 VAL B 87 5 4 HELIX 6 AA6 ASN B 99 ASN B 110 1 12 HELIX 7 AA7 PHE B 140 LEU B 144 5 5 HELIX 8 AA8 SER B 174 LEU B 184 1 11 HELIX 9 AA9 THR B 206 VAL B 212 1 7 HELIX 10 AB1 PRO C 19 GLY C 25 1 7 HELIX 11 AB2 PRO C 26 GLY C 28 5 3 HELIX 12 AB3 MSE C 32 THR C 42 1 11 HELIX 13 AB4 LYS C 43 GLU C 46 5 4 HELIX 14 AB5 PRO C 71 LYS C 78 1 8 HELIX 15 AB6 THR C 98 LYS C 110 1 13 HELIX 16 AB7 ASP C 111 MSE C 113 5 3 HELIX 17 AB8 THR C 117 SER C 131 1 15 HELIX 18 AB9 ASP C 140 ALA C 150 1 11 SHEET 1 AA1 5 VAL B 54 MSE B 58 0 SHEET 2 AA1 5 ALA B 91 THR B 96 -1 O ILE B 93 N ARG B 57 SHEET 3 AA1 5 VAL B 29 ASP B 34 -1 N VAL B 33 O ALA B 92 SHEET 4 AA1 5 ASN B 194 GLU B 200 -1 O ASN B 194 N ASP B 34 SHEET 5 AA1 5 ILE B 203 TYR B 205 -1 O TYR B 205 N VAL B 198 SHEET 1 AA2 2 SER B 112 ALA B 114 0 SHEET 2 AA2 2 ILE B 189 VAL B 191 -1 O VAL B 191 N SER B 112 SHEET 1 AA3 3 GLY B 131 SER B 132 0 SHEET 2 AA3 3 LYS B 157 ILE B 160 -1 O ILE B 160 N GLY B 131 SHEET 3 AA3 3 ALA B 151 GLU B 154 -1 N ALA B 152 O ALA B 159 SHEET 1 AA4 3 LYS C 2 THR C 10 0 SHEET 2 AA4 3 GLN C 49 ASP C 57 -1 O VAL C 54 N VAL C 5 SHEET 3 AA4 3 ILE C 65 VAL C 67 -1 O GLU C 66 N LYS C 53 SHEET 1 AA5 2 ASN C 96 LEU C 97 0 SHEET 2 AA5 2 THR C 135 VAL C 136 1 O THR C 135 N LEU C 97 LINK O6 G A1157 MG MG A1309 1555 1555 3.00 LINK O6 G A1166 MG MG A1301 1555 1555 2.18 LINK OP2 G A1169 NA NA A1312 1555 1555 2.96 LINK OP2 U A1171 NA NA A1312 1555 1555 2.80 LINK O3' A A1179 NA NA A1313 1555 1555 2.58 LINK OP2 A A1180 MG MG A1303 1555 1555 2.45 LINK OP2 A A1180 NA NA A1313 1555 1555 3.07 LINK O5' A A1180 NA NA A1313 1555 1555 2.95 LINK OP1 C A1182 MG MG A1303 1555 1555 2.34 LINK OP1 C A1182 NA NA A1313 1555 1555 3.19 LINK OP2 A A1183 MG MG A1302 1555 1555 2.23 LINK O4 U A1204 MG MG A1302 1555 1555 1.97 LINK C MSE B 9 N ALA B 10 1555 1555 1.33 LINK C ASP B 34 N MSE B 35 1555 1555 1.32 LINK C MSE B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N ASP B 37 1555 1555 1.34 LINK C ARG B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N SER B 59 1555 1555 1.33 LINK C ASP B 97 N MSE B 98 1555 1555 1.34 LINK C MSE B 98 N ASN B 99 1555 1555 1.33 LINK C GLY B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N PRO B 136 1555 1555 1.35 LINK C VAL C 31 N MSE C 32 1555 1555 1.33 LINK C MSE C 32 N GLN C 33 1555 1555 1.33 LINK C GLY C 47 N MSE C 48 1555 1555 1.33 LINK C MSE C 48 N GLN C 49 1555 1555 1.33 LINK C LYS C 107 N MSE C 108 1555 1555 1.33 LINK C MSE C 108 N LYS C 109 1555 1555 1.32 LINK O LYS C 110 MG MG C 201 1555 1555 2.97 LINK C ALA C 112 N MSE C 113 1555 1555 1.32 LINK C MSE C 113 N LEU C 114 1555 1555 1.33 LINK O MSE C 113 MG MG C 201 1555 1555 2.82 LINK O SER C 115 MG MG C 201 1555 1555 2.76 LINK C SER C 131 N MSE C 132 1555 1555 1.33 LINK C MSE C 132 N GLY C 133 1555 1555 1.33 LINK C11 QUA D 0 OG1 THR D 12 1555 1555 1.48 LINK C ALA D 2 N DHA D 3 1555 1555 1.51 LINK C DHA D 3 N ALA D 4 1555 1555 1.26 LINK CA SER D 5 C BB9 D 13 1555 1555 1.63 LINK C SER D 5 N BB9 D 6 1555 1555 1.45 LINK C SER D 5 SG BB9 D 6 1555 1555 1.93 LINK CB SER D 5 CB MH6 D 14 1555 1555 1.57 LINK C BB9 D 6 N THR D 7 1555 1555 1.25 LINK C THR D 7 N DBU D 8 1555 1555 1.47 LINK C DBU D 8 N DCY D 9 1555 1555 1.40 LINK C DBU D 8 SG DCY D 9 1555 1555 1.81 LINK C DCY D 9 N TS9 D 10 1555 1555 1.33 LINK C TS9 D 10 N BB9 D 11 1555 1555 1.40 LINK C TS9 D 10 SG BB9 D 11 1555 1555 1.74 LINK C THR D 12 N BB9 D 13 1555 1555 1.38 LINK C THR D 12 SG BB9 D 13 1555 1555 1.84 LINK C BB9 D 13 N MH6 D 14 1555 1555 1.58 LINK C MH6 D 14 N BB9 D 15 1555 1555 1.40 LINK C MH6 D 14 SG BB9 D 15 1555 1555 1.80 LINK C BB9 D 15 N DHA D 16 1555 1555 1.55 LINK C DHA D 16 N DHA D 17 1555 1555 1.41 LINK C DHA D 17 N NH2 D 18 1555 1555 1.38 LINK MG MG A1301 O HOH A1417 1555 1555 2.25 LINK MG MG A1301 O HOH A1405 1555 1555 1.88 LINK MG MG A1301 O HOH A1414 1555 1555 2.06 LINK MG MG A1301 O HOH A1434 1555 1555 2.27 LINK MG MG A1301 O HOH A1429 1555 1555 1.92 LINK MG MG A1302 O HOH A1409 1555 1555 2.84 LINK MG MG A1302 O HOH A1416 1555 1555 2.83 LINK MG MG A1302 O HOH A1422 1555 1555 2.06 LINK MG MG A1302 O HOH A1428 1555 1555 2.14 LINK MG MG A1303 O HOH A1432 1555 1555 2.23 LINK MG MG A1303 O HOH A1437 1555 1555 2.58 LINK MG MG A1304 O HOH A1420 1555 1555 1.95 LINK MG MG A1304 O HOH A1431 1555 1555 2.24 LINK MG MG A1304 O HOH A1440 1555 1555 2.24 LINK MG MG A1304 O HOH A1442 1555 1555 2.07 LINK MG MG A1304 O HOH A1454 1555 1555 2.04 LINK MG MG A1304 O HOH A1403 1555 1555 2.29 LINK MG MG A1305 O HOH A1413 1555 1555 2.50 LINK MG MG A1305 O HOH A1424 1555 1555 2.20 LINK MG MG A1305 O HOH A1425 1555 1555 2.35 LINK MG MG A1305 O HOH A1439 1555 1555 2.64 LINK MG MG A1305 O HOH A1448 1555 1555 2.35 LINK MG MG A1305 O HOH A1451 1555 1555 2.53 LINK MG MG A1306 O HOH A1412 1555 1555 1.80 LINK MG MG A1306 O HOH A1436 1555 1555 2.15 LINK MG MG A1306 O HOH A1445 1555 1555 2.07 LINK MG MG A1306 O HOH A1446 1555 1555 1.74 LINK MG MG A1306 O HOH A1449 1555 1555 1.73 LINK MG MG A1306 O HOH A1453 1555 1555 1.78 LINK MG MG A1307 O HOH A1408 1555 1555 2.53 LINK MG MG A1307 O HOH A1427 1555 1555 2.45 LINK MG MG A1307 O HOH A1435 1555 1555 2.45 LINK MG MG A1308 O HOH A1421 1555 1555 2.25 LINK MG MG A1308 O HOH A1438 1555 1555 1.98 LINK MG MG A1308 O HOH A1441 1555 1555 1.80 LINK MG MG A1309 O HOH A1426 1555 1555 2.36 LINK MG MG A1309 O HOH A1452 1555 1555 2.49 LINK MG MG A1309 O HOH A1456 1555 1555 2.41 LINK NA NA A1311 O HOH A1447 1555 1555 2.94 LINK NA NA A1313 O HOH A1401 1555 1555 2.08 LINK MG MG C 201 O HOH C 303 1555 1555 2.37 CISPEP 1 GLY C 17 PRO C 18 0 -20.47 SITE 1 AC1 6 G A1166 HOH A1405 HOH A1414 HOH A1417 SITE 2 AC1 6 HOH A1429 HOH A1434 SITE 1 AC2 7 A A1183 G A1203 U A1204 HOH A1409 SITE 2 AC2 7 HOH A1416 HOH A1422 HOH A1428 SITE 1 AC3 7 G A1173 A A1180 C A1182 G A1184 SITE 2 AC3 7 NA A1313 HOH A1432 HOH A1437 SITE 1 AC4 6 HOH A1403 HOH A1420 HOH A1431 HOH A1440 SITE 2 AC4 6 HOH A1442 HOH A1454 SITE 1 AC5 6 HOH A1413 HOH A1424 HOH A1425 HOH A1439 SITE 2 AC5 6 HOH A1448 HOH A1451 SITE 1 AC6 6 HOH A1412 HOH A1436 HOH A1445 HOH A1446 SITE 2 AC6 6 HOH A1449 HOH A1453 SITE 1 AC7 6 G A1181 A A1208 HOH A1408 HOH A1427 SITE 2 AC7 6 HOH A1435 HOH A1457 SITE 1 AC8 5 U A1175 HOH A1421 HOH A1438 HOH A1441 SITE 2 AC8 5 HOH A1444 SITE 1 AC9 6 G A1157 G A1220 HOH A1415 HOH A1426 SITE 2 AC9 6 HOH A1452 HOH A1456 SITE 1 AD1 7 G A1223 HOH A1402 HOH A1430 HOH A1443 SITE 2 AD1 7 HOH A1450 HOH A1455 HOH A1458 SITE 1 AD2 3 U A1176 A A1177 HOH A1447 SITE 1 AD3 2 G A1169 U A1171 SITE 1 AD4 6 A A1179 A A1180 C A1182 A A1183 SITE 2 AD4 6 MG A1303 HOH A1401 SITE 1 AD5 3 G A1166 A A1167 C A1210 SITE 1 AD6 4 A A1167 G A1168 G A1197 G A1199 SITE 1 AD7 2 ASP B 34 MSE B 36 SITE 1 AD8 3 GLU B 82 ASN B 85 TYR B 86 SITE 1 AD9 5 LYS C 110 MSE C 113 SER C 115 HOH C 301 SITE 2 AD9 5 HOH C 303 SITE 1 AE1 6 QUA D 0 ALA D 4 SER D 5 BB9 D 6 SITE 2 AE1 6 THR D 7 THR D 12 SITE 1 AE2 10 A A1177 G A1178 A A1205 QUA D 0 SITE 2 AE2 10 ALA D 4 SER D 5 DBU D 8 DCY D 9 SITE 3 AE2 10 THR D 12 BB9 D 13 SITE 1 AE3 7 A A1177 A A1205 QUA D 0 ALA D 4 SITE 2 AE3 7 SER D 5 THR D 7 BB9 D 13 SITE 1 AE4 4 ALA D 4 SER D 5 BB9 D 13 BB9 D 15 SITE 1 AE5 8 A A1177 G A1178 LYS B 25 GLU B 74 SITE 2 AE5 8 PRO C 18 QUA D 0 THR D 7 THR D 12 SITE 1 AE6 7 QUA D 0 ALA D 4 SER D 5 BB9 D 6 SITE 2 AE6 7 THR D 7 THR D 12 MH6 D 14 SITE 1 AE7 7 QUA D 0 ALA D 4 SER D 5 BB9 D 6 SITE 2 AE7 7 THR D 7 THR D 12 MH6 D 14 CRYST1 125.070 127.160 132.930 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007523 0.00000