HEADER IMMUNE SYSTEM 17-AUG-15 5D8J TITLE DEVELOPMENT OF A THERAPEUTIC MONOCLONAL ANTIBODY TARGETING SECRETED TITLE 2 AP2 TO TREAT TYPE 2 DIABETES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN, ADIPOCYTE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3T3-L1 LIPID-BINDING PROTEIN,ADIPOCYTE LIPID-BINDING COMPND 5 PROTEIN,ALBP,ADIPOCYTE-TYPE FATTY ACID-BINDING PROTEIN,AFABP,FATTY COMPND 6 ACID-BINDING PROTEIN 4,MYELIN P2 PROTEIN HOMOLOG,P15,P2 ADIPOCYTE COMPND 7 PROTEIN,PROTEIN 422; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HA3 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HA3 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FABP4, AP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS AP2, FABP4, DIABETES, METABOLIC SYNDROME, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.DOYLE,G.BIRRANE REVDAT 3 06-NOV-24 5D8J 1 REMARK REVDAT 2 02-AUG-17 5D8J 1 REVDAT 1 13-JAN-16 5D8J 0 JRNL AUTH M.F.BURAK,K.E.INOUYE,A.WHITE,A.LEE,G.TUNCMAN,E.S.CALAY, JRNL AUTH 2 M.SEKIYA,A.TIROSH,K.EGUCHI,G.BIRRANE,D.LIGHTWOOD,L.HOWELLS, JRNL AUTH 3 G.ODEDE,H.HAILU,S.WEST,R.GARLISH,H.NEALE,C.DOYLE,A.MOORE, JRNL AUTH 4 G.S.HOTAMISLIGIL JRNL TITL DEVELOPMENT OF A THERAPEUTIC MONOCLONAL ANTIBODY THAT JRNL TITL 2 TARGETS SECRETED FATTY ACID-BINDING PROTEIN AP2 TO TREAT JRNL TITL 3 TYPE 2 DIABETES. JRNL REF SCI TRANSL MED V. 7 RA205 2015 JRNL REFN ESSN 1946-6242 JRNL PMID 26702093 JRNL DOI 10.1126/SCITRANSLMED.AAC6336 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 12264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 664 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.493 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.404 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.795 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4412 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4060 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5998 ; 1.729 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9411 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 8.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;36.211 ;24.491 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;19.009 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4926 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 958 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 0.390 ; 0.894 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2247 ; 0.390 ; 0.894 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2803 ; 0.733 ; 1.339 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2804 ; 0.733 ; 1.339 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 0.200 ; 0.899 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2158 ; 0.196 ; 0.896 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3189 ; 0.415 ; 1.325 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17741 ; 2.076 ; 8.127 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17740 ; 2.076 ; 8.128 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): -39.9230 -6.4530 1.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.2803 T22: 0.0918 REMARK 3 T33: 0.0446 T12: -0.0262 REMARK 3 T13: -0.0809 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.4071 L22: 3.2961 REMARK 3 L33: 2.7196 L12: 0.0816 REMARK 3 L13: 1.3272 L23: 0.4074 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: 0.1002 S13: 0.1883 REMARK 3 S21: -0.1599 S22: 0.0314 S23: 0.1626 REMARK 3 S31: -0.0419 S32: 0.0891 S33: 0.0673 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9500 7.6480 14.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.0401 REMARK 3 T33: 0.2583 T12: 0.0214 REMARK 3 T13: -0.1386 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.8769 L22: 1.0046 REMARK 3 L33: 0.9765 L12: 0.9162 REMARK 3 L13: 0.4243 L23: -0.3939 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0074 S13: 0.2057 REMARK 3 S21: 0.0415 S22: -0.0318 S23: -0.2299 REMARK 3 S31: -0.0195 S32: 0.0121 S33: 0.0420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7030 2.6850 28.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.0734 REMARK 3 T33: 0.0290 T12: -0.0729 REMARK 3 T13: -0.0807 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.7132 L22: 5.3299 REMARK 3 L33: 1.8541 L12: -1.0233 REMARK 3 L13: 0.0636 L23: 0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0172 S13: 0.1538 REMARK 3 S21: -0.2858 S22: 0.0397 S23: -0.0277 REMARK 3 S31: -0.0263 S32: 0.0928 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4070 -11.8170 23.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.1156 REMARK 3 T33: 0.0986 T12: -0.0244 REMARK 3 T13: -0.1474 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.8919 L22: 1.8222 REMARK 3 L33: 1.4826 L12: -0.1383 REMARK 3 L13: 0.5371 L23: -0.5731 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.1875 S13: -0.2298 REMARK 3 S21: 0.2322 S22: -0.1196 S23: -0.2010 REMARK 3 S31: 0.0777 S32: 0.0536 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 108 C 214 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6570 -0.8190 42.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.3555 T22: 0.1893 REMARK 3 T33: 0.0906 T12: 0.0391 REMARK 3 T13: 0.0326 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.3008 L22: 6.9311 REMARK 3 L33: 1.1374 L12: 2.2542 REMARK 3 L13: 0.8165 L23: 1.4703 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: -0.1847 S13: 0.2286 REMARK 3 S21: 0.5714 S22: -0.1887 S23: 0.5877 REMARK 3 S31: 0.0085 S32: -0.2404 S33: 0.1393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 33.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.01100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM 2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID, 150MM AMMONIUM SULFATE, 24% PEG 4000, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.02000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER H 134 REMARK 465 ALA H 135 REMARK 465 ALA H 136 REMARK 465 GLN H 137 REMARK 465 CYS H 221 REMARK 465 CYS L 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP H 220 CG OD1 OD2 REMARK 470 THR L 110 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 155 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU H 183 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 CYS H 201 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -98.35 159.45 REMARK 500 LEU A 67 113.46 100.84 REMARK 500 ASP A 78 40.00 81.98 REMARK 500 ASP A 99 43.79 35.72 REMARK 500 ASP A 110 -69.58 -101.71 REMARK 500 SER H 77 38.67 71.94 REMARK 500 TYR H 102 122.56 45.17 REMARK 500 TYR H 103 -63.13 102.89 REMARK 500 ASP H 104 61.89 64.39 REMARK 500 ALA H 120 -165.14 76.02 REMARK 500 LYS H 121 109.16 103.66 REMARK 500 PRO H 132 -157.47 -66.05 REMARK 500 PHE H 152 -112.61 30.42 REMARK 500 PRO H 153 -82.65 -15.45 REMARK 500 GLU H 154 128.39 104.94 REMARK 500 SER H 166 -59.82 -133.84 REMARK 500 SER H 178 -89.48 -122.82 REMARK 500 PRO L 8 107.98 33.04 REMARK 500 THR L 52 -40.67 66.12 REMARK 500 LEU L 55 113.59 85.41 REMARK 500 SER L 68 104.72 -175.08 REMARK 500 ALA L 85 171.05 179.48 REMARK 500 ALA L 131 99.38 -173.35 REMARK 500 ASN L 139 70.33 65.22 REMARK 500 LYS L 200 -37.75 -39.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 119 ALA H 120 146.47 REMARK 500 PRO H 218 ARG H 219 129.42 REMARK 500 SER L 7 PRO L 8 -123.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C0N RELATED DB: PDB REMARK 900 5C0N CONTAINS THE SAME PROTEIN COMPLEXED WITH THE FAB OF CA33 REMARK 900 ANTIBODY DBREF 5D8J A 1 132 UNP P04117 FABP4_MOUSE 1 132 DBREF 5D8J H 1 221 PDB 5D8J 5D8J 1 221 DBREF 5D8J L 1 215 PDB 5D8J 5D8J 1 215 SEQADV 5D8J GLY A -1 UNP P04117 EXPRESSION TAG SEQADV 5D8J SER A 0 UNP P04117 EXPRESSION TAG SEQRES 1 A 134 GLY SER MET CYS ASP ALA PHE VAL GLY THR TRP LYS LEU SEQRES 2 A 134 VAL SER SER GLU ASN PHE ASP ASP TYR MET LYS GLU VAL SEQRES 3 A 134 GLY VAL GLY PHE ALA THR ARG LYS VAL ALA GLY MET ALA SEQRES 4 A 134 LYS PRO ASN MET ILE ILE SER VAL ASN GLY ASP LEU VAL SEQRES 5 A 134 THR ILE ARG SER GLU SER THR PHE LYS ASN THR GLU ILE SEQRES 6 A 134 SER PHE LYS LEU GLY VAL GLU PHE ASP GLU ILE THR ALA SEQRES 7 A 134 ASP ASP ARG LYS VAL LYS SER ILE ILE THR LEU ASP GLY SEQRES 8 A 134 GLY ALA LEU VAL GLN VAL GLN LYS TRP ASP GLY LYS SER SEQRES 9 A 134 THR THR ILE LYS ARG LYS ARG ASP GLY ASP LYS LEU VAL SEQRES 10 A 134 VAL GLU CYS VAL MET LYS GLY VAL THR SER THR ARG VAL SEQRES 11 A 134 TYR GLU ARG ALA SEQRES 1 H 221 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR SER ASN TRP ILE THR TRP VAL LYS GLN SEQRES 4 H 221 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASP ILE TYR SEQRES 5 H 221 PRO GLY SER GLY SER THR THR ASN ASN GLU LYS PHE LYS SEQRES 6 H 221 SER LYS ALA THR LEU THR VAL ASP THR SER SER SER THR SEQRES 7 H 221 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG LEU ARG GLY TYR TYR ASP SEQRES 9 H 221 TYR PHE ASP PHE TRP GLY GLN GLY THR THR LEU THR VAL SEQRES 10 H 221 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 221 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 221 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 221 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 221 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 221 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 L 215 GLU VAL VAL LEU THR GLN SER PRO ALA LEU MET ALA ALA SEQRES 2 L 215 SER PRO GLY GLU LYS VAL THR ILE THR CYS SER VAL SER SEQRES 3 L 215 SER SER ILE SER SER SER ASN LEU HIS TRP TYR GLN GLN SEQRES 4 L 215 LYS SER GLU THR SER PRO LYS PRO TRP ILE TYR GLY THR SEQRES 5 L 215 SER ASN LEU ALA SER GLY VAL PRO VAL ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR SER TYR SER LEU THR ILE SER SER SEQRES 7 L 215 MET GLU ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 TRP SER HIS TYR PRO LEU THR PHE GLY ALA GLY THR LYS SEQRES 9 L 215 LEU GLU LEU LYS ARG THR ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 ASN A 16 GLY A 25 1 10 HELIX 2 AA2 GLY A 27 GLY A 35 1 9 HELIX 3 AA3 THR H 28 ASN H 32 5 5 HELIX 4 AA4 GLU H 62 LYS H 65 5 4 HELIX 5 AA5 THR H 87 SER H 91 5 5 HELIX 6 AA6 SER L 30 SER L 32 5 3 HELIX 7 AA7 GLU L 80 ALA L 84 5 5 HELIX 8 AA8 SER L 122 GLY L 129 1 8 HELIX 9 AA9 THR L 183 GLU L 188 1 6 SHEET 1 AA110 ASN A 60 PHE A 65 0 SHEET 2 AA110 LEU A 49 GLU A 55 -1 N VAL A 50 O PHE A 65 SHEET 3 AA110 ASN A 40 ASN A 46 -1 N ILE A 42 O ARG A 53 SHEET 4 AA110 GLY A 7 GLU A 15 -1 N TRP A 9 O MET A 41 SHEET 5 AA110 VAL A 123 ARG A 131 -1 O VAL A 128 N VAL A 12 SHEET 6 AA110 LEU A 114 MET A 120 -1 N CYS A 118 O SER A 125 SHEET 7 AA110 LYS A 101 ARG A 109 -1 N LYS A 106 O GLU A 117 SHEET 8 AA110 ALA A 91 TRP A 98 -1 N TRP A 98 O LYS A 101 SHEET 9 AA110 LYS A 80 ASP A 88 -1 N ASP A 88 O ALA A 91 SHEET 10 AA110 PHE A 71 ILE A 74 -1 N PHE A 71 O SER A 83 SHEET 1 AA2 4 GLN H 3 GLN H 5 0 SHEET 2 AA2 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA2 4 THR H 78 LEU H 83 -1 O LEU H 83 N VAL H 18 SHEET 4 AA2 4 THR H 69 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA3 6 ALA H 9 VAL H 12 0 SHEET 2 AA3 6 THR H 113 VAL H 117 1 O THR H 116 N GLU H 10 SHEET 3 AA3 6 ALA H 92 ARG H 100 -1 N ALA H 92 O LEU H 115 SHEET 4 AA3 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA3 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA3 6 THR H 58 ASN H 60 -1 O THR H 59 N ASP H 50 SHEET 1 AA4 4 ALA H 9 VAL H 12 0 SHEET 2 AA4 4 THR H 113 VAL H 117 1 O THR H 116 N GLU H 10 SHEET 3 AA4 4 ALA H 92 ARG H 100 -1 N ALA H 92 O LEU H 115 SHEET 4 AA4 4 TYR H 105 TRP H 109 -1 O TYR H 105 N ARG H 100 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 MET H 141 LYS H 149 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O VAL H 187 N LEU H 144 SHEET 4 AA5 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 AA6 4 SER H 126 LEU H 130 0 SHEET 2 AA6 4 MET H 141 LYS H 149 -1 O GLY H 145 N LEU H 130 SHEET 3 AA6 4 TYR H 181 PRO H 190 -1 O VAL H 187 N LEU H 144 SHEET 4 AA6 4 VAL H 175 LEU H 176 -1 N VAL H 175 O THR H 182 SHEET 1 AA7 3 THR H 157 TRP H 160 0 SHEET 2 AA7 3 VAL H 199 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 AA7 3 THR H 210 ILE H 216 -1 O ILE H 216 N VAL H 199 SHEET 1 AA8 4 LEU L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 VAL L 25 -1 O SER L 24 N THR L 5 SHEET 3 AA8 4 SER L 71 ILE L 76 -1 O TYR L 72 N CYS L 23 SHEET 4 AA8 4 PHE L 63 SER L 68 -1 N SER L 66 O SER L 73 SHEET 1 AA9 5 LEU L 10 ALA L 13 0 SHEET 2 AA9 5 THR L 103 LEU L 107 1 O GLU L 106 N MET L 11 SHEET 3 AA9 5 ALA L 85 GLN L 91 -1 N ALA L 85 O LEU L 105 SHEET 4 AA9 5 LEU L 34 GLN L 39 -1 N GLN L 39 O THR L 86 SHEET 5 AA9 5 LYS L 46 ILE L 49 -1 O ILE L 49 N TRP L 36 SHEET 1 AB1 4 LEU L 10 ALA L 13 0 SHEET 2 AB1 4 THR L 103 LEU L 107 1 O GLU L 106 N MET L 11 SHEET 3 AB1 4 ALA L 85 GLN L 91 -1 N ALA L 85 O LEU L 105 SHEET 4 AB1 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB2 4 THR L 115 PHE L 119 0 SHEET 2 AB2 4 SER L 132 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB2 4 TYR L 174 THR L 181 -1 O LEU L 180 N VAL L 133 SHEET 4 AB2 4 VAL L 160 TRP L 164 -1 N LEU L 161 O THR L 179 SHEET 1 AB3 4 GLU L 155 ARG L 156 0 SHEET 2 AB3 4 ASN L 146 ILE L 151 -1 N TRP L 149 O ARG L 156 SHEET 3 AB3 4 SER L 192 THR L 198 -1 O GLU L 196 N LYS L 148 SHEET 4 AB3 4 ILE L 206 ASN L 211 -1 O LYS L 208 N CYS L 195 SSBOND 1 CYS H 22 CYS H 96 1555 1555 1.97 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.04 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.04 CISPEP 1 GLU H 154 PRO H 155 0 4.25 CISPEP 2 TRP H 194 PRO H 195 0 14.54 CISPEP 3 TYR L 95 PRO L 96 0 -4.11 CISPEP 4 TYR L 141 PRO L 142 0 2.99 SITE 1 AC1 6 LYS A 22 PHE A 28 ARG A 31 SER L 93 SITE 2 AC1 6 HIS L 94 TYR L 95 CRYST1 71.499 66.040 75.678 90.00 111.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013986 0.000000 0.005557 0.00000 SCALE2 0.000000 0.015142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014219 0.00000