HEADER PROTEIN BINDING 18-AUG-15 5D9G TITLE CRYSTAL STRUCTURE OF TIPRL, TOR SIGNALING PATHWAY REGULATOR-LIKE, IN TITLE 2 COMPLEX WITH PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIP41-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE MAPK-ACTIVATING PROTEIN PM10,TYPE 2A-INTERACTING COMPND 5 PROTEIN,TIP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OLIGO PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIPRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN BINDING TIP41-LIKE FAMILY PP2A, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR V.SCORSATO,J.SANDY,J.BRANDAO-NETO,H.M.PEREIRA,J.H.C.SMETANA, AUTHOR 2 R.APARICIO REVDAT 7 06-NOV-24 5D9G 1 REMARK REVDAT 6 01-JAN-20 5D9G 1 REMARK REVDAT 5 17-APR-19 5D9G 1 REMARK REVDAT 4 01-NOV-17 5D9G 1 REMARK REVDAT 3 20-SEP-17 5D9G 1 REMARK REVDAT 2 17-AUG-16 5D9G 1 JRNL REVDAT 1 10-AUG-16 5D9G 0 JRNL AUTH V.SCORSATO,T.B.LIMA,G.L.RIGHETTO,N.I.ZANCHIN,J.BRANDAO-NETO, JRNL AUTH 2 J.SANDY,H.D.PEREIRA,A.J.FERRARI,F.C.GOZZO,J.H.SMETANA, JRNL AUTH 3 R.APARICIO JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN TIP41 ORTHOLOGUE, TIPRL, JRNL TITL 2 REVEALS A NOVEL FOLD AND A BINDING SITE FOR THE PP2AC JRNL TITL 3 C-TERMINUS. JRNL REF SCI REP V. 6 30813 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27489114 JRNL DOI 10.1038/SREP30813 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6316 - 5.6324 1.00 3372 193 0.1669 0.1724 REMARK 3 2 5.6324 - 4.4714 1.00 3319 198 0.1275 0.1572 REMARK 3 3 4.4714 - 3.9064 1.00 3339 157 0.1259 0.1130 REMARK 3 4 3.9064 - 3.5493 1.00 3308 154 0.1441 0.2010 REMARK 3 5 3.5493 - 3.2949 1.00 3315 179 0.1612 0.1995 REMARK 3 6 3.2949 - 3.1007 1.00 3291 179 0.1921 0.2237 REMARK 3 7 3.1007 - 2.9454 1.00 3331 182 0.2141 0.2457 REMARK 3 8 2.9454 - 2.8172 1.00 3275 187 0.2221 0.2516 REMARK 3 9 2.8172 - 2.7088 1.00 3293 172 0.2286 0.2573 REMARK 3 10 2.7088 - 2.6153 1.00 3353 126 0.2304 0.2439 REMARK 3 11 2.6153 - 2.5335 1.00 3461 0 0.2480 0.0000 REMARK 3 12 2.5335 - 2.4611 1.00 3454 0 0.2457 0.0000 REMARK 3 13 2.4611 - 2.3963 1.00 3469 0 0.2651 0.0000 REMARK 3 14 2.3963 - 2.3379 1.00 3298 140 0.2886 0.3302 REMARK 3 15 2.3379 - 2.2847 0.99 3271 167 0.2837 0.3413 REMARK 3 16 2.2847 - 2.2361 1.00 3263 174 0.3004 0.3377 REMARK 3 17 2.2361 - 2.1914 1.00 3306 155 0.3112 0.3505 REMARK 3 18 2.1914 - 2.1500 0.99 3277 157 0.3510 0.3787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4184 REMARK 3 ANGLE : 0.691 5677 REMARK 3 CHIRALITY : 0.026 630 REMARK 3 PLANARITY : 0.003 723 REMARK 3 DIHEDRAL : 12.977 1558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4677 63.3485 -5.3033 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.4020 REMARK 3 T33: 0.2761 T12: -0.0865 REMARK 3 T13: -0.0522 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 6.4264 L22: 4.5578 REMARK 3 L33: 2.2274 L12: -0.1926 REMARK 3 L13: -0.1298 L23: -0.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: 0.7576 S13: -0.3901 REMARK 3 S21: -0.2155 S22: -0.0255 S23: 0.2989 REMARK 3 S31: 0.1235 S32: 0.0924 S33: 0.1362 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8524 65.8960 4.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.2867 REMARK 3 T33: 0.2802 T12: -0.0654 REMARK 3 T13: 0.0029 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 4.3508 L22: 2.3213 REMARK 3 L33: 1.3651 L12: -1.4575 REMARK 3 L13: 0.9948 L23: -0.2968 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.2025 S13: -0.0289 REMARK 3 S21: -0.0214 S22: -0.0353 S23: 0.0144 REMARK 3 S31: -0.0737 S32: 0.0120 S33: 0.1465 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1020 72.0959 13.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.3626 T22: 0.2648 REMARK 3 T33: 0.4082 T12: -0.0648 REMARK 3 T13: 0.0145 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 4.2031 L22: 3.3346 REMARK 3 L33: 5.7970 L12: -2.0827 REMARK 3 L13: 2.9416 L23: -2.8913 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: -0.0249 S13: 0.1464 REMARK 3 S21: 0.0973 S22: 0.0641 S23: 0.2209 REMARK 3 S31: -0.1156 S32: -0.1163 S33: 0.1576 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.9110 45.0850 3.5864 REMARK 3 T TENSOR REMARK 3 T11: 0.4244 T22: 0.4982 REMARK 3 T33: 0.3090 T12: -0.0371 REMARK 3 T13: -0.0022 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.2323 L22: 6.8268 REMARK 3 L33: 1.4596 L12: 1.0082 REMARK 3 L13: 0.0987 L23: 1.8595 REMARK 3 S TENSOR REMARK 3 S11: 0.1788 S12: -0.4175 S13: 0.0438 REMARK 3 S21: 0.6208 S22: -0.1937 S23: -0.3367 REMARK 3 S31: 0.1570 S32: 0.0408 S33: 0.0117 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.6351 25.7272 -1.0705 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.3388 REMARK 3 T33: 0.5061 T12: 0.0008 REMARK 3 T13: -0.0011 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 7.1141 L22: 0.3498 REMARK 3 L33: 2.1059 L12: 1.4484 REMARK 3 L13: 0.9870 L23: -0.1738 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.7078 S13: 0.0674 REMARK 3 S21: 0.5536 S22: -0.1015 S23: -0.3178 REMARK 3 S31: 0.1736 S32: 0.1372 S33: 0.1980 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.3160 50.5837 -6.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.4320 REMARK 3 T33: 0.3642 T12: -0.0504 REMARK 3 T13: 0.0112 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.1453 L22: 4.4064 REMARK 3 L33: 1.4223 L12: 0.2913 REMARK 3 L13: 0.0821 L23: 1.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.1896 S13: 0.1625 REMARK 3 S21: -0.0832 S22: -0.0375 S23: 0.1944 REMARK 3 S31: -0.0819 S32: -0.1960 S33: 0.0172 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.1392 50.3517 -12.3688 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.3810 REMARK 3 T33: 0.4585 T12: -0.0566 REMARK 3 T13: -0.0041 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.1216 L22: 3.6633 REMARK 3 L33: 7.2627 L12: -0.6979 REMARK 3 L13: -1.5368 L23: 3.2209 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0971 S13: 0.2291 REMARK 3 S21: -0.0222 S22: -0.0970 S23: 0.3936 REMARK 3 S31: -0.0140 S32: -0.5032 S33: 0.1051 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1033 69.7801 14.6558 REMARK 3 T TENSOR REMARK 3 T11: 0.6929 T22: 0.8746 REMARK 3 T33: 0.8464 T12: -0.0132 REMARK 3 T13: 0.1022 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 5.2797 L22: 8.1068 REMARK 3 L33: 9.0445 L12: -4.7007 REMARK 3 L13: -4.9411 L23: 0.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.3903 S12: -1.6097 S13: 0.2106 REMARK 3 S21: 0.3783 S22: -0.0728 S23: 0.7523 REMARK 3 S31: -0.8789 S32: -0.6310 S33: -0.3068 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.6894 62.6129 -13.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.7261 REMARK 3 T33: 0.6071 T12: -0.0199 REMARK 3 T13: -0.0598 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 4.4790 L22: 3.5937 REMARK 3 L33: 3.5766 L12: 2.8521 REMARK 3 L13: 2.7636 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: -0.5634 S12: 1.1942 S13: 0.9506 REMARK 3 S21: -0.8341 S22: 0.4391 S23: 0.1566 REMARK 3 S31: -0.1273 S32: 0.1344 S33: 0.0278 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99219 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62695 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 95.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 1.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SPG BUFFER, PH 5.5. 1.5M NACL, REMARK 280 TIPRL 90MG/ML, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.98333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.97500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.99167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.95833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT HAS BEEN DETERMINED BY SAXS AND GEL REMARK 300 FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 9 REMARK 465 ASN C 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 GLU B 256 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 99 -167.94 61.64 REMARK 500 SER A 124 -56.49 -122.65 REMARK 500 VAL A 192 -65.22 -122.28 REMARK 500 GLU B 99 -168.44 62.32 REMARK 500 GLU B 123 -71.29 -82.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 DBREF 5D9G A 16 256 UNP O75663 TIPRL_HUMAN 16 256 DBREF 5D9G B 16 256 UNP O75663 TIPRL_HUMAN 16 256 DBREF 5D9G C 9 14 PDB 5D9G 5D9G 9 14 DBREF 5D9G D 9 14 PDB 5D9G 5D9G 9 14 SEQADV 5D9G GLY A 11 UNP O75663 EXPRESSION TAG SEQADV 5D9G HIS A 12 UNP O75663 EXPRESSION TAG SEQADV 5D9G MSE A 13 UNP O75663 EXPRESSION TAG SEQADV 5D9G ALA A 14 UNP O75663 EXPRESSION TAG SEQADV 5D9G SER A 15 UNP O75663 EXPRESSION TAG SEQADV 5D9G GLY B 11 UNP O75663 EXPRESSION TAG SEQADV 5D9G HIS B 12 UNP O75663 EXPRESSION TAG SEQADV 5D9G MSE B 13 UNP O75663 EXPRESSION TAG SEQADV 5D9G ALA B 14 UNP O75663 EXPRESSION TAG SEQADV 5D9G SER B 15 UNP O75663 EXPRESSION TAG SEQRES 1 A 246 GLY HIS MSE ALA SER GLY PRO TRP LYS LEU THR ALA SER SEQRES 2 A 246 LYS THR HIS ILE MSE LYS SER ALA ASP VAL GLU LYS LEU SEQRES 3 A 246 ALA ASP GLU LEU HIS MSE PRO SER LEU PRO GLU MSE MSE SEQRES 4 A 246 PHE GLY ASP ASN VAL LEU ARG ILE GLN HIS GLY SER GLY SEQRES 5 A 246 PHE GLY ILE GLU PHE ASN ALA THR ASP ALA LEU ARG CYS SEQRES 6 A 246 VAL ASN ASN TYR GLN GLY MSE LEU LYS VAL ALA CYS ALA SEQRES 7 A 246 GLU GLU TRP GLN GLU SER ARG THR GLU GLY GLU HIS SER SEQRES 8 A 246 LYS GLU VAL ILE LYS PRO TYR ASP TRP THR TYR THR THR SEQRES 9 A 246 ASP TYR LYS GLY THR LEU LEU GLY GLU SER LEU LYS LEU SEQRES 10 A 246 LYS VAL VAL PRO THR THR ASP HIS ILE ASP THR GLU LYS SEQRES 11 A 246 LEU LYS ALA ARG GLU GLN ILE LYS PHE PHE GLU GLU VAL SEQRES 12 A 246 LEU LEU PHE GLU ASP GLU LEU HIS ASP HIS GLY VAL SER SEQRES 13 A 246 SER LEU SER VAL LYS ILE ARG VAL MSE PRO SER SER PHE SEQRES 14 A 246 PHE LEU LEU LEU ARG PHE PHE LEU ARG ILE ASP GLY VAL SEQRES 15 A 246 LEU ILE ARG MSE ASN ASP THR ARG LEU TYR HIS GLU ALA SEQRES 16 A 246 ASP LYS THR TYR MSE LEU ARG GLU TYR THR SER ARG GLU SEQRES 17 A 246 SER LYS ILE SER SER LEU MSE HIS VAL PRO PRO SER LEU SEQRES 18 A 246 PHE THR GLU PRO ASN GLU ILE SER GLN TYR LEU PRO ILE SEQRES 19 A 246 LYS GLU ALA VAL CYS GLU LYS LEU ILE PHE PRO GLU SEQRES 1 B 246 GLY HIS MSE ALA SER GLY PRO TRP LYS LEU THR ALA SER SEQRES 2 B 246 LYS THR HIS ILE MSE LYS SER ALA ASP VAL GLU LYS LEU SEQRES 3 B 246 ALA ASP GLU LEU HIS MSE PRO SER LEU PRO GLU MSE MSE SEQRES 4 B 246 PHE GLY ASP ASN VAL LEU ARG ILE GLN HIS GLY SER GLY SEQRES 5 B 246 PHE GLY ILE GLU PHE ASN ALA THR ASP ALA LEU ARG CYS SEQRES 6 B 246 VAL ASN ASN TYR GLN GLY MSE LEU LYS VAL ALA CYS ALA SEQRES 7 B 246 GLU GLU TRP GLN GLU SER ARG THR GLU GLY GLU HIS SER SEQRES 8 B 246 LYS GLU VAL ILE LYS PRO TYR ASP TRP THR TYR THR THR SEQRES 9 B 246 ASP TYR LYS GLY THR LEU LEU GLY GLU SER LEU LYS LEU SEQRES 10 B 246 LYS VAL VAL PRO THR THR ASP HIS ILE ASP THR GLU LYS SEQRES 11 B 246 LEU LYS ALA ARG GLU GLN ILE LYS PHE PHE GLU GLU VAL SEQRES 12 B 246 LEU LEU PHE GLU ASP GLU LEU HIS ASP HIS GLY VAL SER SEQRES 13 B 246 SER LEU SER VAL LYS ILE ARG VAL MSE PRO SER SER PHE SEQRES 14 B 246 PHE LEU LEU LEU ARG PHE PHE LEU ARG ILE ASP GLY VAL SEQRES 15 B 246 LEU ILE ARG MSE ASN ASP THR ARG LEU TYR HIS GLU ALA SEQRES 16 B 246 ASP LYS THR TYR MSE LEU ARG GLU TYR THR SER ARG GLU SEQRES 17 B 246 SER LYS ILE SER SER LEU MSE HIS VAL PRO PRO SER LEU SEQRES 18 B 246 PHE THR GLU PRO ASN GLU ILE SER GLN TYR LEU PRO ILE SEQRES 19 B 246 LYS GLU ALA VAL CYS GLU LYS LEU ILE PHE PRO GLU SEQRES 1 C 6 GLU ASN LEU TYR PHE GLN SEQRES 1 D 6 GLU ASN LEU TYR PHE GLN MODRES 5D9G MSE A 28 MET MODIFIED RESIDUE MODRES 5D9G MSE A 42 MET MODIFIED RESIDUE MODRES 5D9G MSE A 48 MET MODIFIED RESIDUE MODRES 5D9G MSE A 49 MET MODIFIED RESIDUE MODRES 5D9G MSE A 82 MET MODIFIED RESIDUE MODRES 5D9G MSE A 175 MET MODIFIED RESIDUE MODRES 5D9G MSE A 196 MET MODIFIED RESIDUE MODRES 5D9G MSE A 210 MET MODIFIED RESIDUE MODRES 5D9G MSE A 225 MET MODIFIED RESIDUE MODRES 5D9G MSE B 28 MET MODIFIED RESIDUE MODRES 5D9G MSE B 42 MET MODIFIED RESIDUE MODRES 5D9G MSE B 48 MET MODIFIED RESIDUE MODRES 5D9G MSE B 49 MET MODIFIED RESIDUE MODRES 5D9G MSE B 82 MET MODIFIED RESIDUE MODRES 5D9G MSE B 175 MET MODIFIED RESIDUE MODRES 5D9G MSE B 196 MET MODIFIED RESIDUE MODRES 5D9G MSE B 210 MET MODIFIED RESIDUE MODRES 5D9G MSE B 225 MET MODIFIED RESIDUE HET MSE A 13 13 HET MSE A 28 8 HET MSE A 42 8 HET MSE A 48 13 HET MSE A 49 8 HET MSE A 82 8 HET MSE A 175 8 HET MSE A 196 13 HET MSE A 210 8 HET MSE A 225 8 HET MSE B 13 8 HET MSE B 28 8 HET MSE B 42 8 HET MSE B 48 13 HET MSE B 49 8 HET MSE B 82 8 HET MSE B 175 8 HET MSE B 196 8 HET MSE B 210 8 HET MSE B 225 16 HET CL A 301 1 HET PO4 A 302 5 HET NI A 303 1 HET CL B 301 1 HET PO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM NI NICKEL (II) ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 CL 2(CL 1-) FORMUL 6 PO4 2(O4 P 3-) FORMUL 7 NI NI 2+ FORMUL 10 HOH *233(H2 O) HELIX 1 AA1 LYS A 29 LEU A 40 1 12 HELIX 2 AA2 ASN A 68 ARG A 74 1 7 HELIX 3 AA3 MSE A 82 CYS A 87 1 6 HELIX 4 AA4 ASP A 137 ALA A 143 1 7 HELIX 5 AA5 SER A 222 MSE A 225 5 4 HELIX 6 AA6 PRO A 228 THR A 233 5 6 HELIX 7 AA7 GLU A 234 SER A 239 1 6 HELIX 8 AA8 GLN A 240 LEU A 242 5 3 HELIX 9 AA9 LYS B 29 LEU B 40 1 12 HELIX 10 AB1 ASN B 68 CYS B 75 1 8 HELIX 11 AB2 MSE B 82 CYS B 87 1 6 HELIX 12 AB3 ASP B 137 LYS B 142 1 6 HELIX 13 AB4 SER B 222 LEU B 224 5 3 HELIX 14 AB5 PRO B 228 THR B 233 5 6 HELIX 15 AB6 GLU B 234 SER B 239 1 6 HELIX 16 AB7 GLN B 240 LEU B 242 5 3 SHEET 1 AA1 7 THR A 119 LEU A 121 0 SHEET 2 AA1 7 GLY A 64 PHE A 67 -1 N GLU A 66 O THR A 119 SHEET 3 AA1 7 VAL A 54 HIS A 59 -1 N ILE A 57 O ILE A 65 SHEET 4 AA1 7 TRP A 18 SER A 23 -1 N THR A 21 O ARG A 56 SHEET 5 AA1 7 HIS A 12 SER A 15 -1 N MSE A 13 O LEU A 20 SHEET 6 AA1 7 PHE B 149 ASP B 158 -1 O PHE B 150 N HIS A 12 SHEET 7 AA1 7 MSE B 48 MSE B 49 -1 N MSE B 48 O GLU B 157 SHEET 1 AA212 THR A 119 LEU A 121 0 SHEET 2 AA212 GLY A 64 PHE A 67 -1 N GLU A 66 O THR A 119 SHEET 3 AA212 VAL A 54 HIS A 59 -1 N ILE A 57 O ILE A 65 SHEET 4 AA212 TRP A 18 SER A 23 -1 N THR A 21 O ARG A 56 SHEET 5 AA212 HIS A 12 SER A 15 -1 N MSE A 13 O LEU A 20 SHEET 6 AA212 PHE B 149 ASP B 158 -1 O PHE B 150 N HIS A 12 SHEET 7 AA212 GLY B 164 MSE B 175 -1 O VAL B 170 N VAL B 153 SHEET 8 AA212 SER B 178 ILE B 189 -1 O SER B 178 N MSE B 175 SHEET 9 AA212 LEU B 193 GLU B 204 -1 O THR B 199 N LEU B 183 SHEET 10 AA212 TYR B 209 LYS B 220 -1 O ARG B 217 N MSE B 196 SHEET 11 AA212 ILE B 244 ILE B 253 -1 O VAL B 248 N TYR B 214 SHEET 12 AA212 LYS B 128 PRO B 131 -1 N VAL B 130 O LYS B 251 SHEET 1 AA3 8 MSE A 48 MSE A 49 0 SHEET 2 AA3 8 PHE A 149 ASP A 158 -1 O GLU A 157 N MSE A 48 SHEET 3 AA3 8 GLY A 164 MSE A 175 -1 O VAL A 170 N VAL A 153 SHEET 4 AA3 8 SER A 178 ILE A 189 -1 O SER A 178 N MSE A 175 SHEET 5 AA3 8 LEU A 193 GLU A 204 -1 O THR A 199 N LEU A 183 SHEET 6 AA3 8 TYR A 209 LYS A 220 -1 O ARG A 217 N MSE A 196 SHEET 7 AA3 8 ILE A 244 ILE A 253 -1 O VAL A 248 N TYR A 214 SHEET 8 AA3 8 LYS A 128 PRO A 131 -1 N VAL A 130 O LYS A 251 SHEET 1 AA4 7 MSE A 48 MSE A 49 0 SHEET 2 AA4 7 PHE A 149 ASP A 158 -1 O GLU A 157 N MSE A 48 SHEET 3 AA4 7 HIS B 12 SER B 15 -1 O HIS B 12 N PHE A 150 SHEET 4 AA4 7 TRP B 18 SER B 23 -1 O LEU B 20 N MSE B 13 SHEET 5 AA4 7 VAL B 54 HIS B 59 -1 O ARG B 56 N THR B 21 SHEET 6 AA4 7 GLY B 64 PHE B 67 -1 O ILE B 65 N ILE B 57 SHEET 7 AA4 7 THR B 119 LEU B 121 -1 O THR B 119 N GLU B 66 SSBOND 1 CYS A 87 CYS B 87 1555 5555 2.03 LINK C HIS A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ALA A 14 1555 1555 1.33 LINK C ILE A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N LYS A 29 1555 1555 1.33 LINK C HIS A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N PRO A 43 1555 1555 1.34 LINK C GLU A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N PHE A 50 1555 1555 1.33 LINK C GLY A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N LEU A 83 1555 1555 1.33 LINK C VAL A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N PRO A 176 1555 1555 1.35 LINK C ARG A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N ASN A 197 1555 1555 1.33 LINK C TYR A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N LEU A 211 1555 1555 1.33 LINK C LEU A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N HIS A 226 1555 1555 1.33 LINK C HIS B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N ALA B 14 1555 1555 1.33 LINK C ILE B 27 N MSE B 28 1555 1555 1.33 LINK C MSE B 28 N LYS B 29 1555 1555 1.33 LINK C HIS B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N PRO B 43 1555 1555 1.34 LINK C GLU B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N PHE B 50 1555 1555 1.33 LINK C GLY B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N LEU B 83 1555 1555 1.33 LINK C VAL B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N PRO B 176 1555 1555 1.35 LINK C ARG B 195 N MSE B 196 1555 1555 1.33 LINK C MSE B 196 N ASN B 197 1555 1555 1.33 LINK C TYR B 209 N MSE B 210 1555 1555 1.33 LINK C MSE B 210 N LEU B 211 1555 1555 1.33 LINK C LEU B 224 N AMSE B 225 1555 1555 1.33 LINK C LEU B 224 N BMSE B 225 1555 1555 1.33 LINK C AMSE B 225 N HIS B 226 1555 1555 1.33 LINK C BMSE B 225 N HIS B 226 1555 1555 1.33 CISPEP 1 GLU A 99 HIS A 100 0 4.15 CISPEP 2 GLU B 99 HIS B 100 0 4.52 SITE 1 AC1 5 GLN A 80 GLY A 81 MSE A 82 LEU A 83 SITE 2 AC1 5 TYR A 108 SITE 1 AC2 4 THR A 132 THR A 133 ASP A 134 LYS A 251 SITE 1 AC3 5 GLN B 80 GLY B 81 MSE B 82 LEU B 83 SITE 2 AC3 5 TYR B 108 SITE 1 AC4 1 HIS B 226 CRYST1 145.307 145.307 95.950 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006882 0.003973 0.000000 0.00000 SCALE2 0.000000 0.007947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010422 0.00000