HEADER TRANSFERASE 18-AUG-15 5D9H TITLE CRYSTAL STRUCTURE OF SPAK (STK39) DIMER IN THE BASAL ACTIVITY STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STE20/SPS1-RELATED PROLINE-ALANINE-RICH PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 63-403; COMPND 5 SYNONYM: STE-20-RELATED KINASE,SERINE/THREONINE-PROTEIN KINASE 39; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: STK39, SPAK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS.PARALLEL1 KEYWDS KINASE, STE20, HYPERTENSION, STK39, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.TAYLOR,Y.C.JUANG,E.J.GOLDSMITH,M.H.COBB REVDAT 5 06-MAR-24 5D9H 1 LINK REVDAT 4 25-DEC-19 5D9H 1 REMARK REVDAT 3 22-NOV-17 5D9H 1 REMARK REVDAT 2 06-SEP-17 5D9H 1 JRNL REMARK REVDAT 1 02-SEP-15 5D9H 0 JRNL AUTH C.A.TAYLOR,Y.C.JUANG,S.EARNEST,S.SENGUPTA,E.J.GOLDSMITH, JRNL AUTH 2 M.H.COBB JRNL TITL DOMAIN-SWAPPING SWITCH POINT IN STE20 PROTEIN KINASE SPAK. JRNL REF BIOCHEMISTRY V. 54 5063 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26208601 JRNL DOI 10.1021/ACS.BIOCHEM.5B00593 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 12032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8710 - 6.4460 0.95 1403 157 0.2166 0.1953 REMARK 3 2 6.4460 - 5.1191 0.97 1363 143 0.2476 0.2875 REMARK 3 3 5.1191 - 4.4728 0.96 1373 154 0.2144 0.2741 REMARK 3 4 4.4728 - 4.0642 0.96 1342 148 0.2085 0.2552 REMARK 3 5 4.0642 - 3.7731 0.95 1342 144 0.2478 0.2719 REMARK 3 6 3.7731 - 3.5507 0.93 1297 147 0.2594 0.2871 REMARK 3 7 3.5507 - 3.3730 0.83 1153 125 0.2728 0.3268 REMARK 3 8 3.3730 - 3.2262 0.67 938 102 0.2883 0.3932 REMARK 3 9 3.2262 - 3.1000 0.46 628 73 0.3130 0.3877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4736 REMARK 3 ANGLE : 1.181 6403 REMARK 3 CHIRALITY : 0.057 719 REMARK 3 PLANARITY : 0.005 793 REMARK 3 DIHEDRAL : 13.514 1789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13658 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 150 MM AMMONIUM SULFATE, REMARK 280 18% PEG4000, 1:1 DROP RATIO, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.05250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 56 REMARK 465 ALA A 57 REMARK 465 MET A 58 REMARK 465 ASP A 59 REMARK 465 PRO A 60 REMARK 465 GLU A 61 REMARK 465 PHE A 62 REMARK 465 ALA A 63 REMARK 465 GLN A 64 REMARK 465 ASN A 238 REMARK 465 LYS A 239 REMARK 465 VAL A 240 REMARK 465 ARG A 241 REMARK 465 LYS A 242 REMARK 465 THR A 243 REMARK 465 PHE A 244 REMARK 465 GLU A 310 REMARK 465 ASP A 311 REMARK 465 THR A 364 REMARK 465 ARG A 365 REMARK 465 THR A 366 REMARK 465 PRO A 367 REMARK 465 ASP A 368 REMARK 465 ILE A 369 REMARK 465 ALA A 370 REMARK 465 GLN A 371 REMARK 465 ARG A 372 REMARK 465 ALA A 373 REMARK 465 LYS A 374 REMARK 465 LYS A 375 REMARK 465 VAL A 376 REMARK 465 ARG A 377 REMARK 465 ARG A 378 REMARK 465 VAL A 379 REMARK 465 PRO A 380 REMARK 465 GLY A 381 REMARK 465 SER A 382 REMARK 465 SER A 383 REMARK 465 GLY A 384 REMARK 465 HIS A 385 REMARK 465 LEU A 386 REMARK 465 HIS A 387 REMARK 465 LYS A 388 REMARK 465 THR A 389 REMARK 465 GLU A 390 REMARK 465 ASP A 391 REMARK 465 GLY A 392 REMARK 465 ASP A 393 REMARK 465 TRP A 394 REMARK 465 GLU A 395 REMARK 465 TRP A 396 REMARK 465 SER A 397 REMARK 465 ASP A 398 REMARK 465 ASP A 399 REMARK 465 GLU A 400 REMARK 465 MET A 401 REMARK 465 ASP A 402 REMARK 465 GLU A 403 REMARK 465 GLY B 56 REMARK 465 ALA B 57 REMARK 465 MET B 58 REMARK 465 ASP B 59 REMARK 465 PRO B 60 REMARK 465 GLU B 61 REMARK 465 PHE B 62 REMARK 465 ALA B 63 REMARK 465 GLN B 64 REMARK 465 LYS B 239 REMARK 465 VAL B 240 REMARK 465 ARG B 241 REMARK 465 LYS B 242 REMARK 465 THR B 243 REMARK 465 PHE B 244 REMARK 465 VAL B 245 REMARK 465 ARG B 365 REMARK 465 THR B 366 REMARK 465 PRO B 367 REMARK 465 ASP B 368 REMARK 465 ILE B 369 REMARK 465 ALA B 370 REMARK 465 GLN B 371 REMARK 465 ARG B 372 REMARK 465 ALA B 373 REMARK 465 LYS B 374 REMARK 465 LYS B 375 REMARK 465 VAL B 376 REMARK 465 ARG B 377 REMARK 465 ARG B 378 REMARK 465 VAL B 379 REMARK 465 PRO B 380 REMARK 465 GLY B 381 REMARK 465 SER B 382 REMARK 465 SER B 383 REMARK 465 GLY B 384 REMARK 465 HIS B 385 REMARK 465 LEU B 386 REMARK 465 HIS B 387 REMARK 465 LYS B 388 REMARK 465 THR B 389 REMARK 465 GLU B 390 REMARK 465 ASP B 391 REMARK 465 GLY B 392 REMARK 465 ASP B 393 REMARK 465 TRP B 394 REMARK 465 GLU B 395 REMARK 465 TRP B 396 REMARK 465 SER B 397 REMARK 465 ASP B 398 REMARK 465 ASP B 399 REMARK 465 GLU B 400 REMARK 465 MET B 401 REMARK 465 ASP B 402 REMARK 465 GLU B 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 257 NH2 ARG B 260 1.93 REMARK 500 OH TYR A 136 OG SER A 139 1.97 REMARK 500 O LEU B 153 O GLY B 155 2.02 REMARK 500 O THR A 236 OH TYR A 262 2.09 REMARK 500 NZ LYS A 104 OD1 ASP A 222 2.09 REMARK 500 NH2 ARG A 260 OE1 GLU B 257 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 105 OG SER B 129 2656 1.64 REMARK 500 NZ LYS A 143 OE1 GLU A 187 2645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 334 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 78 -157.28 -121.14 REMARK 500 TYR A 137 -73.89 -89.51 REMARK 500 ARG A 203 -0.69 78.38 REMARK 500 ASP A 204 40.29 -146.69 REMARK 500 ASP A 222 61.10 60.83 REMARK 500 ALA A 230 -9.25 -57.47 REMARK 500 VAL A 235 1.35 -58.87 REMARK 500 ASP A 263 -163.89 -120.74 REMARK 500 TYR A 285 41.17 -93.60 REMARK 500 GLU A 313 40.49 -85.97 REMARK 500 LYS A 345 36.73 -84.58 REMARK 500 LYS A 351 33.58 -94.60 REMARK 500 GLN B 78 -164.78 -118.87 REMARK 500 THR B 138 -176.38 -171.50 REMARK 500 ASN B 167 21.09 -78.70 REMARK 500 ARG B 168 -4.65 -140.01 REMARK 500 VAL B 175 -68.50 -92.64 REMARK 500 ARG B 203 -12.16 74.23 REMARK 500 ASP B 204 46.01 -140.17 REMARK 500 ASP B 222 61.20 60.61 REMARK 500 ASP B 263 -158.67 -125.52 REMARK 500 THR B 304 -162.10 -126.26 REMARK 500 LYS B 351 36.60 -89.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 209 OD1 REMARK 620 2 ASP A 222 OD1 110.0 REMARK 620 3 ATP A 501 O1G 89.5 79.1 REMARK 620 4 ATP A 501 O2B 87.3 157.2 86.7 REMARK 620 5 ATP A 501 O2A 157.1 82.0 112.4 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 209 OD1 REMARK 620 2 ASP B 222 OD1 101.6 REMARK 620 3 ATP B 501 O3G 77.9 79.8 REMARK 620 4 ATP B 501 O1B 88.7 146.0 70.8 REMARK 620 5 ATP B 501 O1A 158.3 77.6 80.7 81.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 505 DBREF 5D9H A 63 403 UNP Q9Z1W9 STK39_MOUSE 63 403 DBREF 5D9H B 63 403 UNP Q9Z1W9 STK39_MOUSE 63 403 SEQADV 5D9H GLY A 56 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H ALA A 57 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H MET A 58 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H ASP A 59 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H PRO A 60 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H GLU A 61 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H PHE A 62 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H GLY B 56 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H ALA B 57 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H MET B 58 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H ASP B 59 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H PRO B 60 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H GLU B 61 UNP Q9Z1W9 EXPRESSION TAG SEQADV 5D9H PHE B 62 UNP Q9Z1W9 EXPRESSION TAG SEQRES 1 A 348 GLY ALA MET ASP PRO GLU PHE ALA GLN ALA VAL GLY TRP SEQRES 2 A 348 PRO ILE CYS ARG ASP ALA TYR GLU LEU GLN GLU VAL ILE SEQRES 3 A 348 GLY SER GLY ALA THR ALA VAL VAL GLN ALA ALA LEU CYS SEQRES 4 A 348 LYS PRO ARG GLN GLU ARG VAL ALA ILE LYS ARG ILE ASN SEQRES 5 A 348 LEU GLU LYS CYS GLN THR SER MET ASP GLU LEU LEU LYS SEQRES 6 A 348 GLU ILE GLN ALA MET SER GLN CYS SER HIS PRO ASN VAL SEQRES 7 A 348 VAL THR TYR TYR THR SER PHE VAL VAL LYS ASP GLU LEU SEQRES 8 A 348 TRP LEU VAL MET LYS LEU LEU SER GLY GLY SER MET LEU SEQRES 9 A 348 ASP ILE ILE LYS TYR ILE VAL ASN ARG GLY GLU HIS LYS SEQRES 10 A 348 ASN GLY VAL LEU GLU GLU ALA ILE ILE ALA THR ILE LEU SEQRES 11 A 348 LYS GLU VAL LEU GLU GLY LEU ASP TYR LEU HIS ARG ASN SEQRES 12 A 348 GLY GLN ILE HIS ARG ASP LEU LYS ALA GLY ASN ILE LEU SEQRES 13 A 348 LEU GLY GLU ASP GLY SER VAL GLN ILE ALA ASP PHE GLY SEQRES 14 A 348 VAL SER ALA PHE LEU ALA THR GLY GLY ASP VAL THR ARG SEQRES 15 A 348 ASN LYS VAL ARG LYS THR PHE VAL GLY THR PRO CYS TRP SEQRES 16 A 348 MET ALA PRO GLU VAL MET GLU GLN VAL ARG GLY TYR ASP SEQRES 17 A 348 PHE LYS ALA ASP MET TRP SER PHE GLY ILE THR ALA ILE SEQRES 18 A 348 GLU LEU ALA THR GLY ALA ALA PRO TYR HIS LYS TYR PRO SEQRES 19 A 348 PRO MET LYS VAL LEU MET LEU THR LEU GLN ASN ASP PRO SEQRES 20 A 348 PRO THR LEU GLU THR GLY VAL GLU ASP LYS GLU MET MET SEQRES 21 A 348 LYS LYS TYR GLY LYS SER PHE ARG LYS LEU LEU SER LEU SEQRES 22 A 348 CYS LEU GLN LYS ASP PRO SER LYS ARG PRO THR ALA ALA SEQRES 23 A 348 GLU LEU LEU LYS CYS LYS PHE PHE GLN LYS ALA LYS ASN SEQRES 24 A 348 ARG GLU TYR LEU ILE GLU LYS LEU LEU THR ARG THR PRO SEQRES 25 A 348 ASP ILE ALA GLN ARG ALA LYS LYS VAL ARG ARG VAL PRO SEQRES 26 A 348 GLY SER SER GLY HIS LEU HIS LYS THR GLU ASP GLY ASP SEQRES 27 A 348 TRP GLU TRP SER ASP ASP GLU MET ASP GLU SEQRES 1 B 348 GLY ALA MET ASP PRO GLU PHE ALA GLN ALA VAL GLY TRP SEQRES 2 B 348 PRO ILE CYS ARG ASP ALA TYR GLU LEU GLN GLU VAL ILE SEQRES 3 B 348 GLY SER GLY ALA THR ALA VAL VAL GLN ALA ALA LEU CYS SEQRES 4 B 348 LYS PRO ARG GLN GLU ARG VAL ALA ILE LYS ARG ILE ASN SEQRES 5 B 348 LEU GLU LYS CYS GLN THR SER MET ASP GLU LEU LEU LYS SEQRES 6 B 348 GLU ILE GLN ALA MET SER GLN CYS SER HIS PRO ASN VAL SEQRES 7 B 348 VAL THR TYR TYR THR SER PHE VAL VAL LYS ASP GLU LEU SEQRES 8 B 348 TRP LEU VAL MET LYS LEU LEU SER GLY GLY SER MET LEU SEQRES 9 B 348 ASP ILE ILE LYS TYR ILE VAL ASN ARG GLY GLU HIS LYS SEQRES 10 B 348 ASN GLY VAL LEU GLU GLU ALA ILE ILE ALA THR ILE LEU SEQRES 11 B 348 LYS GLU VAL LEU GLU GLY LEU ASP TYR LEU HIS ARG ASN SEQRES 12 B 348 GLY GLN ILE HIS ARG ASP LEU LYS ALA GLY ASN ILE LEU SEQRES 13 B 348 LEU GLY GLU ASP GLY SER VAL GLN ILE ALA ASP PHE GLY SEQRES 14 B 348 VAL SER ALA PHE LEU ALA THR GLY GLY ASP VAL THR ARG SEQRES 15 B 348 ASN LYS VAL ARG LYS THR PHE VAL GLY THR PRO CYS TRP SEQRES 16 B 348 MET ALA PRO GLU VAL MET GLU GLN VAL ARG GLY TYR ASP SEQRES 17 B 348 PHE LYS ALA ASP MET TRP SER PHE GLY ILE THR ALA ILE SEQRES 18 B 348 GLU LEU ALA THR GLY ALA ALA PRO TYR HIS LYS TYR PRO SEQRES 19 B 348 PRO MET LYS VAL LEU MET LEU THR LEU GLN ASN ASP PRO SEQRES 20 B 348 PRO THR LEU GLU THR GLY VAL GLU ASP LYS GLU MET MET SEQRES 21 B 348 LYS LYS TYR GLY LYS SER PHE ARG LYS LEU LEU SER LEU SEQRES 22 B 348 CYS LEU GLN LYS ASP PRO SER LYS ARG PRO THR ALA ALA SEQRES 23 B 348 GLU LEU LEU LYS CYS LYS PHE PHE GLN LYS ALA LYS ASN SEQRES 24 B 348 ARG GLU TYR LEU ILE GLU LYS LEU LEU THR ARG THR PRO SEQRES 25 B 348 ASP ILE ALA GLN ARG ALA LYS LYS VAL ARG ARG VAL PRO SEQRES 26 B 348 GLY SER SER GLY HIS LEU HIS LYS THR GLU ASP GLY ASP SEQRES 27 B 348 TRP GLU TRP SER ASP ASP GLU MET ASP GLU HET ATP A 501 43 HET MG A 502 1 HET SO4 A 503 5 HET SO4 A 504 5 HET ATP B 501 43 HET MG B 502 1 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 SO4 5(O4 S 2-) HELIX 1 AA1 CYS A 71 ASP A 73 5 3 HELIX 2 AA2 SER A 114 ALA A 124 1 11 HELIX 3 AA3 SER A 157 ASN A 167 1 11 HELIX 4 AA4 GLU A 177 ASN A 198 1 22 HELIX 5 AA5 LYS A 206 GLY A 208 5 3 HELIX 6 AA6 GLY A 224 ALA A 230 1 7 HELIX 7 AA7 THR A 231 ARG A 237 5 7 HELIX 8 AA8 ALA A 252 GLU A 257 1 6 HELIX 9 AA9 PHE A 264 GLY A 281 1 18 HELIX 10 AB1 PRO A 289 ASN A 300 1 12 HELIX 11 AB2 GLY A 319 LEU A 330 1 12 HELIX 12 AB3 ASP A 333 ARG A 337 5 5 HELIX 13 AB4 THR A 339 LYS A 345 1 7 HELIX 14 AB5 CYS A 346 ALA A 352 5 7 HELIX 15 AB6 ASN A 354 LEU A 362 1 9 HELIX 16 AB7 CYS B 71 ASP B 73 5 3 HELIX 17 AB8 SER B 114 SER B 126 1 13 HELIX 18 AB9 SER B 157 ASN B 167 1 11 HELIX 19 AC1 GLU B 177 ARG B 197 1 21 HELIX 20 AC2 LYS B 206 GLY B 208 5 3 HELIX 21 AC3 GLY B 224 THR B 231 1 8 HELIX 22 AC4 GLY B 232 ARG B 237 5 6 HELIX 23 AC5 ALA B 252 GLU B 257 1 6 HELIX 24 AC6 PHE B 264 GLY B 281 1 18 HELIX 25 AC7 PRO B 289 ASN B 300 1 12 HELIX 26 AC8 GLU B 313 TYR B 318 5 6 HELIX 27 AC9 GLY B 319 LEU B 330 1 12 HELIX 28 AD1 THR B 339 LYS B 345 1 7 HELIX 29 AD2 CYS B 346 LYS B 351 5 6 HELIX 30 AD3 ASN B 354 LEU B 362 1 9 SHEET 1 AA1 5 TYR A 75 SER A 83 0 SHEET 2 AA1 5 VAL A 88 CYS A 94 -1 O ALA A 91 N GLN A 78 SHEET 3 AA1 5 GLU A 99 ASN A 107 -1 O GLU A 99 N CYS A 94 SHEET 4 AA1 5 GLU A 145 LYS A 151 -1 O LEU A 146 N ILE A 106 SHEET 5 AA1 5 TYR A 136 VAL A 141 -1 N PHE A 140 O TRP A 147 SHEET 1 AA2 2 ILE A 210 LEU A 212 0 SHEET 2 AA2 2 VAL A 218 ILE A 220 -1 O GLN A 219 N LEU A 211 SHEET 1 AA3 5 TYR B 75 SER B 83 0 SHEET 2 AA3 5 ALA B 87 CYS B 94 -1 O ALA B 91 N GLN B 78 SHEET 3 AA3 5 GLU B 99 ASN B 107 -1 O GLU B 99 N CYS B 94 SHEET 4 AA3 5 GLU B 145 LYS B 151 -1 O LEU B 146 N ILE B 106 SHEET 5 AA3 5 TYR B 136 VAL B 141 -1 N PHE B 140 O TRP B 147 SHEET 1 AA4 2 ILE B 210 LEU B 212 0 SHEET 2 AA4 2 VAL B 218 ILE B 220 -1 O GLN B 219 N LEU B 211 LINK OD1 ASN A 209 MG MG A 502 1555 1555 1.86 LINK OD1 ASP A 222 MG MG A 502 1555 1555 2.55 LINK O1G ATP A 501 MG MG A 502 1555 1555 2.03 LINK O2B ATP A 501 MG MG A 502 1555 1555 1.87 LINK O2A ATP A 501 MG MG A 502 1555 1555 1.99 LINK OD1 ASN B 209 MG MG B 502 1555 1555 1.91 LINK OD1 ASP B 222 MG MG B 502 1555 1555 2.76 LINK O3G ATP B 501 MG MG B 502 1555 1555 2.38 LINK O1B ATP B 501 MG MG B 502 1555 1555 2.26 LINK O1A ATP B 501 MG MG B 502 1555 1555 1.80 CISPEP 1 VAL A 142 LYS A 143 0 -11.99 CISPEP 2 VAL B 142 LYS B 143 0 -17.66 CISPEP 3 SER B 154 GLY B 155 0 -4.21 SITE 1 AC1 16 ILE A 81 VAL A 89 ALA A 102 LYS A 104 SITE 2 AC1 16 MET A 150 LYS A 151 LEU A 153 SER A 157 SITE 3 AC1 16 ASP A 160 ASP A 204 LYS A 206 GLY A 208 SITE 4 AC1 16 ASN A 209 LEU A 211 ASP A 222 MG A 502 SITE 1 AC2 4 LYS A 104 ASN A 209 ASP A 222 ATP A 501 SITE 1 AC3 4 GLY A 319 LYS A 320 SER A 321 LYS A 351 SITE 1 AC4 2 ASN A 354 ARG A 355 SITE 1 AC5 16 ILE B 81 GLY B 82 ALA B 102 LYS B 104 SITE 2 AC5 16 LYS B 151 LEU B 153 SER B 157 LEU B 159 SITE 3 AC5 16 ASP B 160 ASP B 204 LYS B 206 GLY B 208 SITE 4 AC5 16 ASN B 209 LEU B 211 ASP B 222 MG B 502 SITE 1 AC6 3 ASN B 209 ASP B 222 ATP B 501 SITE 1 AC7 3 GLY B 319 LYS B 320 SER B 321 SITE 1 AC8 2 ASN B 354 ARG B 355 SITE 1 AC9 1 LYS B 186 CRYST1 72.386 56.105 99.958 90.00 108.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013815 0.000000 0.004564 0.00000 SCALE2 0.000000 0.017824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010536 0.00000