HEADER HYDROLASE 18-AUG-15 5D9N TITLE CRYSTAL STRUCTURE OF PBGH5A, A GLYCOSIDE HYDROLASE FAMILY 5 MEMBER TITLE 2 FROM PREVOTELLA BRYANTII B14, IN COMPLEX WITH THE XYLOGLUCAN TITLE 3 HEPTASACCHARIDE XXXG COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-1,4-ENDOGLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 573-924; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA BRYANTII; SOURCE 3 ORGANISM_TAXID: 77095; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS ENDO-BETA-GLUCANASE/ENDO-XYLOGLUCANASE, GLYCOSYL HYDROLASE FAMILY 5, KEYWDS 2 MIXED ALPHA-BETA, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MORAR,P.J.STOGIOS,X.XU,H.CUI,R.DI LEO,V.YIM,A.SAVCHENKO REVDAT 4 27-SEP-23 5D9N 1 HETSYN LINK REVDAT 3 29-JUL-20 5D9N 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-NOV-15 5D9N 1 JRNL REVDAT 1 04-NOV-15 5D9N 0 JRNL AUTH N.MCGREGOR,M.MORAR,T.H.FENGER,P.STOGIOS,N.LENFANT,V.YIN, JRNL AUTH 2 X.XU,E.EVDOKIMOVA,H.CUI,B.HENRISSAT,A.SAVCHENKO,H.BRUMER JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A MIXED-LINKAGE JRNL TITL 2 BETA-GLUCANASE/XYLOGLUCANASE FROM THE KEY RUMINAL JRNL TITL 3 BACTEROIDETES PREVOTELLA BRYANTII B14. JRNL REF J.BIOL.CHEM. V. 291 1175 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26507654 JRNL DOI 10.1074/JBC.M115.691659 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8679 - 4.4746 1.00 5493 151 0.1317 0.1565 REMARK 3 2 4.4746 - 3.5550 1.00 5302 146 0.1146 0.1414 REMARK 3 3 3.5550 - 3.1066 1.00 5236 144 0.1326 0.1401 REMARK 3 4 3.1066 - 2.8230 1.00 5209 143 0.1442 0.1530 REMARK 3 5 2.8230 - 2.6209 1.00 5186 143 0.1444 0.1773 REMARK 3 6 2.6209 - 2.4665 1.00 5191 143 0.1444 0.1801 REMARK 3 7 2.4665 - 2.3431 1.00 5173 141 0.1382 0.2033 REMARK 3 8 2.3431 - 2.2411 1.00 5172 143 0.1365 0.1746 REMARK 3 9 2.2411 - 2.1549 1.00 5122 141 0.1406 0.1880 REMARK 3 10 2.1549 - 2.0806 1.00 5151 142 0.1477 0.1758 REMARK 3 11 2.0806 - 2.0156 1.00 5138 141 0.1549 0.2058 REMARK 3 12 2.0156 - 1.9580 1.00 5129 141 0.1648 0.1987 REMARK 3 13 1.9580 - 1.9064 1.00 5128 142 0.1794 0.2440 REMARK 3 14 1.9064 - 1.8600 0.99 5090 139 0.1943 0.2223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5894 REMARK 3 ANGLE : 1.370 8025 REMARK 3 CHIRALITY : 0.075 906 REMARK 3 PLANARITY : 0.007 1023 REMARK 3 DIHEDRAL : 13.073 2253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.1590 109.8212 162.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1592 REMARK 3 T33: 0.1878 T12: -0.0207 REMARK 3 T13: 0.0129 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5167 L22: 0.2624 REMARK 3 L33: 0.6011 L12: -0.1105 REMARK 3 L13: 0.1047 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.1106 S13: 0.0415 REMARK 3 S21: 0.0632 S22: 0.0114 S23: -0.0023 REMARK 3 S31: -0.0373 S32: 0.0180 S33: -0.0098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 - 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 24.866 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3VDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 MICROL OF PROTEIN SOLUTION AT 28 REMARK 280 MG/ML MIXED WITH 1.8 MICROL OF RESERVOIR SOLUTION (0.1 M SODIUM REMARK 280 CACODYLATE PH 6.3 TO 7.1, 0.2 M CALCIUM ACETATE, 25% PEG8K), REMARK 280 THEN SOAKING IN RESERVOIR SOLUTION SUPPLEMENTED WITH 20 MM XXXG. REMARK 280 CRYOPROTECTANT = PARATONE-N OIL., PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.05800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.05800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 ASN B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 ASN B 353 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 704 O HOH A 963 2.10 REMARK 500 O HOH A 532 O HOH A 782 2.12 REMARK 500 O HOH A 773 O HOH B 574 2.13 REMARK 500 O HOH B 742 O HOH B 808 2.16 REMARK 500 OD1 ASN A 230 O HOH A 501 2.17 REMARK 500 O HOH A 979 O HOH A 1000 2.18 REMARK 500 OE2 GLU A 298 O HOH A 502 2.19 REMARK 500 O HOH A 761 O HOH A 965 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 29 -95.88 -120.40 REMARK 500 HIS A 112 -89.31 -106.03 REMARK 500 ALA A 116 -146.81 89.52 REMARK 500 ASP A 152 -168.18 -79.29 REMARK 500 ASN A 161 -82.50 -89.66 REMARK 500 ASP A 171 -59.65 75.42 REMARK 500 LYS A 214 15.34 -142.65 REMARK 500 PHE A 271 76.75 -103.89 REMARK 500 ASP A 288 29.97 46.43 REMARK 500 SER A 319 -160.12 -113.74 REMARK 500 MET A 325 -52.18 70.36 REMARK 500 THR B 29 -96.90 -119.12 REMARK 500 HIS B 112 -89.23 -103.73 REMARK 500 ALA B 116 -146.08 89.31 REMARK 500 ASP B 152 -167.49 -77.47 REMARK 500 ASN B 161 -82.05 -89.02 REMARK 500 ASP B 171 -57.78 76.06 REMARK 500 THR B 272 -106.03 34.98 REMARK 500 ASP B 288 27.07 44.30 REMARK 500 SER B 319 -160.90 -114.28 REMARK 500 MET B 325 -52.22 72.39 REMARK 500 PHE B 328 81.56 -150.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1067 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1070 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1071 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1072 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1073 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1075 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1076 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1077 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A1089 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A1090 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A1091 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A1092 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A1093 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A1094 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A1095 DISTANCE = 8.59 ANGSTROMS REMARK 525 HOH A1096 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH A1097 DISTANCE = 8.88 ANGSTROMS REMARK 525 HOH A1098 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH A1099 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH A1100 DISTANCE = 9.45 ANGSTROMS REMARK 525 HOH A1101 DISTANCE = 10.23 ANGSTROMS REMARK 525 HOH A1102 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH B 869 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 870 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 PHE A 271 O 17.7 REMARK 620 3 HOH A 561 O 76.9 61.4 REMARK 620 4 HOH A 804 O 77.1 82.9 128.5 REMARK 620 5 HOH A 830 O 80.0 97.4 135.4 81.3 REMARK 620 6 HOH A 937 O 107.0 107.8 73.5 157.3 77.6 REMARK 620 7 HOH A1029 O 155.2 167.1 127.9 84.1 81.2 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 538 O REMARK 620 2 HOH A 656 O 146.3 REMARK 620 3 HOH A 679 O 66.4 146.2 REMARK 620 4 HOH A 698 O 76.5 75.2 137.4 REMARK 620 5 HOH A 815 O 75.8 82.0 108.2 80.7 REMARK 620 6 HOH A 880 O 107.2 87.2 68.2 146.3 68.4 REMARK 620 7 HOH A 941 O 138.8 74.3 76.1 127.5 134.5 72.1 REMARK 620 8 HOH A 956 O 85.8 104.3 81.6 75.6 152.8 137.4 72.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 578 O REMARK 620 2 HOH A 666 O 88.2 REMARK 620 3 HOH A 865 O 164.7 79.2 REMARK 620 4 HOH A 896 O 84.1 74.7 84.3 REMARK 620 5 HOH A 944 O 81.8 76.5 103.3 148.2 REMARK 620 6 HOH A1009 O 117.4 134.8 77.9 139.8 71.7 REMARK 620 7 HOH A1051 O 74.3 151.5 113.6 81.2 121.5 73.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 272 O REMARK 620 2 HOH B 592 O 80.9 REMARK 620 3 HOH B 609 O 140.3 81.3 REMARK 620 4 HOH B 630 O 71.6 101.2 77.6 REMARK 620 5 HOH B 654 O 110.8 167.4 91.8 87.5 REMARK 620 6 HOH B 720 O 75.7 100.8 142.7 136.6 78.4 REMARK 620 7 HOH B 841 O 137.9 81.7 73.1 149.8 86.2 70.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 551 O REMARK 620 2 HOH B 618 O 69.7 REMARK 620 3 HOH B 645 O 76.9 138.1 REMARK 620 4 HOH B 653 O 142.3 146.9 72.6 REMARK 620 5 HOH B 752 O 76.0 112.6 82.0 78.1 REMARK 620 6 HOH B 783 O 106.8 69.2 147.2 88.1 67.9 REMARK 620 7 HOH B 812 O 86.9 80.3 73.1 104.7 152.5 138.8 REMARK 620 8 HOH B 822 O 141.3 75.5 122.9 75.5 134.7 74.9 70.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VDH RELATED DB: PDB REMARK 900 APOENZYME REMARK 900 RELATED ID: 5D9M RELATED DB: PDB REMARK 900 RELATED ID: 5D9O RELATED DB: PDB REMARK 900 RELATED ID: 5D9P RELATED DB: PDB DBREF 5D9N A 2 353 UNP O06842 O06842_PREBR 573 924 DBREF 5D9N B 2 353 UNP O06842 O06842_PREBR 573 924 SEQADV 5D9N MET A 1 UNP O06842 INITIATING METHIONINE SEQADV 5D9N MET B 1 UNP O06842 INITIATING METHIONINE SEQRES 1 A 353 MET ILE ASN GLN ASN ALA THR TYR MET GLU GLU SER ALA SEQRES 2 A 353 GLN SER ALA VAL ASP ASN PHE GLY LEU GLY PHE ASN LEU SEQRES 3 A 353 GLY ASN THR LEU ASP ALA ASN GLY CYS GLY THR GLY LYS SEQRES 4 A 353 PRO VAL ALA THR TYR GLU THR PHE TRP GLY GLN PRO GLU SEQRES 5 A 353 THR THR GLN ASP MET MET THR PHE LEU MET GLN ASN GLY SEQRES 6 A 353 PHE ASN ALA VAL ARG ILE PRO VAL THR TRP TYR GLU HIS SEQRES 7 A 353 MET ASP ALA GLU GLY ASN VAL ASP GLU ALA TRP MET MET SEQRES 8 A 353 ARG VAL LYS ALA ILE VAL GLU TYR ALA MET ASN ALA GLY SEQRES 9 A 353 LEU TYR ALA ILE VAL ASN VAL HIS HIS ASP THR ALA ALA SEQRES 10 A 353 GLY SER GLY ALA TRP ILE LYS ALA ASP THR ASP VAL TYR SEQRES 11 A 353 ALA ALA THR LYS GLU LYS PHE LYS LYS LEU TRP THR GLN SEQRES 12 A 353 ILE ALA ASN ALA LEU ALA ASP TYR ASP GLN HIS LEU LEU SEQRES 13 A 353 PHE GLU GLY TYR ASN GLU MET LEU ASP GLY ASN ASN SER SEQRES 14 A 353 TRP ASP GLU PRO GLN LYS ALA SER GLY TYR GLU ALA LEU SEQRES 15 A 353 ASN ASN TYR ALA GLN ASP PHE VAL ASP ALA VAL ARG ALA SEQRES 16 A 353 THR GLY GLY ASN ASN ALA THR ARG ASN LEU ILE VAL ASN SEQRES 17 A 353 THR TYR ALA ALA ALA LYS GLY GLU ASN VAL LEU ASN ASN SEQRES 18 A 353 PHE MET LEU PRO THR ASP ALA VAL ASN ASN HIS LEU ILE SEQRES 19 A 353 VAL GLN VAL HIS SER TYR ASP PRO TRP ASN PHE PHE ASN SEQRES 20 A 353 THR LYS THR THR TRP ASP SER GLU CYS HIS ASN THR LEU SEQRES 21 A 353 THR GLU ILE PHE SER ALA LEU SER LYS LYS PHE THR THR SEQRES 22 A 353 ILE PRO TYR ILE ILE GLY GLU TYR GLY THR HIS GLY GLU SEQRES 23 A 353 SER ASP ILE SER VAL SER LYS SER SER PRO ALA GLU LYS SEQRES 24 A 353 ILE LYS LEU ALA ALA ASP GLN ALA ALA ASP MET VAL LYS SEQRES 25 A 353 LEU ALA LYS ASP HIS HIS SER ALA THR PHE TYR TRP MET SEQRES 26 A 353 SER ILE PHE ASP GLY SER ASP ARG ILE GLN PRO GLN TRP SEQRES 27 A 353 SER LEU PRO THR VAL VAL GLU ALA MET GLN GLU ALA TYR SEQRES 28 A 353 ASN ASN SEQRES 1 B 353 MET ILE ASN GLN ASN ALA THR TYR MET GLU GLU SER ALA SEQRES 2 B 353 GLN SER ALA VAL ASP ASN PHE GLY LEU GLY PHE ASN LEU SEQRES 3 B 353 GLY ASN THR LEU ASP ALA ASN GLY CYS GLY THR GLY LYS SEQRES 4 B 353 PRO VAL ALA THR TYR GLU THR PHE TRP GLY GLN PRO GLU SEQRES 5 B 353 THR THR GLN ASP MET MET THR PHE LEU MET GLN ASN GLY SEQRES 6 B 353 PHE ASN ALA VAL ARG ILE PRO VAL THR TRP TYR GLU HIS SEQRES 7 B 353 MET ASP ALA GLU GLY ASN VAL ASP GLU ALA TRP MET MET SEQRES 8 B 353 ARG VAL LYS ALA ILE VAL GLU TYR ALA MET ASN ALA GLY SEQRES 9 B 353 LEU TYR ALA ILE VAL ASN VAL HIS HIS ASP THR ALA ALA SEQRES 10 B 353 GLY SER GLY ALA TRP ILE LYS ALA ASP THR ASP VAL TYR SEQRES 11 B 353 ALA ALA THR LYS GLU LYS PHE LYS LYS LEU TRP THR GLN SEQRES 12 B 353 ILE ALA ASN ALA LEU ALA ASP TYR ASP GLN HIS LEU LEU SEQRES 13 B 353 PHE GLU GLY TYR ASN GLU MET LEU ASP GLY ASN ASN SER SEQRES 14 B 353 TRP ASP GLU PRO GLN LYS ALA SER GLY TYR GLU ALA LEU SEQRES 15 B 353 ASN ASN TYR ALA GLN ASP PHE VAL ASP ALA VAL ARG ALA SEQRES 16 B 353 THR GLY GLY ASN ASN ALA THR ARG ASN LEU ILE VAL ASN SEQRES 17 B 353 THR TYR ALA ALA ALA LYS GLY GLU ASN VAL LEU ASN ASN SEQRES 18 B 353 PHE MET LEU PRO THR ASP ALA VAL ASN ASN HIS LEU ILE SEQRES 19 B 353 VAL GLN VAL HIS SER TYR ASP PRO TRP ASN PHE PHE ASN SEQRES 20 B 353 THR LYS THR THR TRP ASP SER GLU CYS HIS ASN THR LEU SEQRES 21 B 353 THR GLU ILE PHE SER ALA LEU SER LYS LYS PHE THR THR SEQRES 22 B 353 ILE PRO TYR ILE ILE GLY GLU TYR GLY THR HIS GLY GLU SEQRES 23 B 353 SER ASP ILE SER VAL SER LYS SER SER PRO ALA GLU LYS SEQRES 24 B 353 ILE LYS LEU ALA ALA ASP GLN ALA ALA ASP MET VAL LYS SEQRES 25 B 353 LEU ALA LYS ASP HIS HIS SER ALA THR PHE TYR TRP MET SEQRES 26 B 353 SER ILE PHE ASP GLY SER ASP ARG ILE GLN PRO GLN TRP SEQRES 27 B 353 SER LEU PRO THR VAL VAL GLU ALA MET GLN GLU ALA TYR SEQRES 28 B 353 ASN ASN HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET XYS C 5 9 HET XYS C 6 9 HET XYS C 7 9 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET XYS D 5 9 HET XYS D 6 9 HET XYS D 7 9 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA B 401 1 HET CA B 402 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 3 BGC 8(C6 H12 O6) FORMUL 3 XYS 6(C5 H10 O5) FORMUL 5 CA 5(CA 2+) FORMUL 10 HOH *972(H2 O) HELIX 1 AA1 SER A 12 GLY A 21 1 10 HELIX 2 AA2 PRO A 40 THR A 46 1 7 HELIX 3 AA3 THR A 54 ASN A 64 1 11 HELIX 4 AA4 TRP A 75 MET A 79 5 5 HELIX 5 AA5 ASP A 86 ALA A 103 1 18 HELIX 6 AA6 ASP A 126 LEU A 148 1 23 HELIX 7 AA7 ALA A 176 THR A 196 1 21 HELIX 8 AA8 GLY A 197 THR A 202 5 6 HELIX 9 AA9 TYR A 210 ALA A 213 5 4 HELIX 10 AB1 GLY A 215 ASN A 221 1 7 HELIX 11 AB2 ASN A 244 LYS A 249 1 6 HELIX 12 AB3 ASP A 253 PHE A 271 1 19 HELIX 13 AB4 GLY A 285 ILE A 289 5 5 HELIX 14 AB5 PRO A 296 HIS A 317 1 22 HELIX 15 AB6 GLY A 330 GLN A 335 1 6 HELIX 16 AB7 LEU A 340 ASN A 353 1 14 HELIX 17 AB8 SER B 12 GLY B 21 1 10 HELIX 18 AB9 PRO B 40 THR B 46 1 7 HELIX 19 AC1 THR B 54 ASN B 64 1 11 HELIX 20 AC2 TRP B 75 MET B 79 5 5 HELIX 21 AC3 ASP B 86 ALA B 103 1 18 HELIX 22 AC4 ASP B 126 LEU B 148 1 23 HELIX 23 AC5 ALA B 176 THR B 196 1 21 HELIX 24 AC6 GLY B 197 THR B 202 5 6 HELIX 25 AC7 TYR B 210 ALA B 213 5 4 HELIX 26 AC8 GLY B 215 ASN B 221 1 7 HELIX 27 AC9 ASN B 244 LYS B 249 1 6 HELIX 28 AD1 ASP B 253 THR B 272 1 20 HELIX 29 AD2 GLY B 285 ILE B 289 5 5 HELIX 30 AD3 PRO B 296 HIS B 317 1 22 HELIX 31 AD4 GLY B 330 GLN B 335 1 6 HELIX 32 AD5 LEU B 340 ASN B 353 1 14 SHEET 1 AA1 9 LEU A 22 ASN A 25 0 SHEET 2 AA1 9 PHE A 66 ILE A 71 1 O ARG A 70 N PHE A 24 SHEET 3 AA1 9 TYR A 106 ASN A 110 1 O ILE A 108 N ILE A 71 SHEET 4 AA1 9 LEU A 155 GLU A 158 1 O LEU A 156 N ALA A 107 SHEET 5 AA1 9 LEU A 205 ASN A 208 1 O ILE A 206 N PHE A 157 SHEET 6 AA1 9 LEU A 233 SER A 239 1 O ILE A 234 N VAL A 207 SHEET 7 AA1 9 TYR A 276 TYR A 281 1 O GLU A 280 N SER A 239 SHEET 8 AA1 9 THR A 321 TRP A 324 1 O TRP A 324 N TYR A 281 SHEET 9 AA1 9 LEU A 22 ASN A 25 1 N ASN A 25 O TYR A 323 SHEET 1 AA2 9 LEU B 22 ASN B 25 0 SHEET 2 AA2 9 PHE B 66 ILE B 71 1 O ARG B 70 N PHE B 24 SHEET 3 AA2 9 TYR B 106 ASN B 110 1 O ILE B 108 N ILE B 71 SHEET 4 AA2 9 LEU B 155 GLU B 158 1 O LEU B 156 N ALA B 107 SHEET 5 AA2 9 LEU B 205 ASN B 208 1 O ILE B 206 N PHE B 157 SHEET 6 AA2 9 LEU B 233 SER B 239 1 O ILE B 234 N VAL B 207 SHEET 7 AA2 9 TYR B 276 TYR B 281 1 O GLU B 280 N SER B 239 SHEET 8 AA2 9 THR B 321 TRP B 324 1 O TRP B 324 N TYR B 281 SHEET 9 AA2 9 LEU B 22 ASN B 25 1 N ASN B 25 O TYR B 323 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.37 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O6 BGC C 2 C1 XYS C 7 1555 1555 1.45 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.42 LINK O6 BGC C 3 C1 XYS C 6 1555 1555 1.45 LINK O6 BGC C 4 C1 XYS C 5 1555 1555 1.45 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.38 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK O6 BGC D 2 C1 XYS D 7 1555 1555 1.45 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.43 LINK O6 BGC D 3 C1 XYS D 6 1555 1555 1.45 LINK O6 BGC D 4 C1 XYS D 5 1555 1555 1.45 LINK OD2 ASP A 56 CA CA A 402 1555 1555 2.35 LINK O PHE A 271 CA CA A 402 1555 4477 2.41 LINK CA CA A 401 O HOH A 538 1555 1555 2.40 LINK CA CA A 401 O HOH A 656 1555 1555 2.40 LINK CA CA A 401 O HOH A 679 1555 1555 2.41 LINK CA CA A 401 O HOH A 698 1555 1555 2.37 LINK CA CA A 401 O HOH A 815 1555 1555 2.40 LINK CA CA A 401 O HOH A 880 1555 1555 2.41 LINK CA CA A 401 O HOH A 941 1555 1555 2.42 LINK CA CA A 401 O HOH A 956 1555 1555 2.41 LINK CA CA A 402 O HOH A 561 1555 1555 2.39 LINK CA CA A 402 O HOH A 804 1555 1555 2.42 LINK CA CA A 402 O HOH A 830 1555 1555 2.39 LINK CA CA A 402 O HOH A 937 1555 1555 2.42 LINK CA CA A 402 O HOH A1029 1555 1555 2.39 LINK CA CA A 403 O HOH A 578 1555 1555 2.37 LINK CA CA A 403 O HOH A 666 1555 1555 2.44 LINK CA CA A 403 O HOH A 865 1555 1555 2.39 LINK CA CA A 403 O HOH A 896 1555 1555 2.41 LINK CA CA A 403 O HOH A 944 1555 1555 2.40 LINK CA CA A 403 O HOH A1009 1555 1555 2.39 LINK CA CA A 403 O HOH A1051 1555 1555 2.41 LINK O THR B 272 CA CA B 402 1555 1555 2.39 LINK CA CA B 401 O HOH B 551 1555 1555 2.38 LINK CA CA B 401 O HOH B 618 1555 1555 2.46 LINK CA CA B 401 O HOH B 645 1555 1555 2.40 LINK CA CA B 401 O HOH B 653 1555 1555 2.40 LINK CA CA B 401 O HOH B 752 1555 1555 2.41 LINK CA CA B 401 O HOH B 783 1555 1555 2.40 LINK CA CA B 401 O HOH B 812 1555 1555 2.39 LINK CA CA B 401 O HOH B 822 1555 1555 2.41 LINK CA CA B 402 O HOH B 592 1555 1555 2.39 LINK CA CA B 402 O HOH B 609 1555 1555 2.41 LINK CA CA B 402 O HOH B 630 1555 1555 2.40 LINK CA CA B 402 O HOH B 654 1555 1555 2.39 LINK CA CA B 402 O HOH B 720 1555 1555 2.39 LINK CA CA B 402 O HOH B 841 1555 1555 2.40 CISPEP 1 ASP A 241 PRO A 242 0 -7.84 CISPEP 2 GLN A 335 PRO A 336 0 -9.48 CISPEP 3 ASP B 241 PRO B 242 0 -6.46 CISPEP 4 GLN B 335 PRO B 336 0 -9.41 CRYST1 75.560 84.116 138.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007213 0.00000