HEADER HYDROLASE 18-AUG-15 5D9O TITLE CRYSTAL STRUCTURE OF PBGH5A, A GLYCOSIDE HYDROLASE FAMILY 5 ENZYME TITLE 2 FROM PREVOTELLA BRYANTII B14, E280A MUTANT IN COMPLEX WITH TITLE 3 CELLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-1,4-ENDOGLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA BRYANTII; SOURCE 3 ORGANISM_TAXID: 77095; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS ENDO-BETA-GLUCANASE/ENDO-XYLOGLUCANASE, GLYCOSYL HYDROLASE FAMILY 5, KEYWDS 2 MIXED ALPHA-BETA, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MORAR,P.J.STOGIOS,X.XU,H.CUI,R.DI LEO,V.YIM,A.SAVCHENKO REVDAT 4 27-SEP-23 5D9O 1 HETSYN LINK REVDAT 3 29-JUL-20 5D9O 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-NOV-15 5D9O 1 JRNL REVDAT 1 04-NOV-15 5D9O 0 JRNL AUTH N.MCGREGOR,M.MORAR,T.H.FENGER,P.STOGIOS,N.LENFANT,V.YIN, JRNL AUTH 2 X.XU,E.EVDOKIMOVA,H.CUI,B.HENRISSAT,A.SAVCHENKO,H.BRUMER JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A MIXED-LINKAGE JRNL TITL 2 BETA-GLUCANASE/XYLOGLUCANASE FROM THE KEY RUMINAL JRNL TITL 3 BACTEROIDETES PREVOTELLA BRYANTII B14. JRNL REF J.BIOL.CHEM. V. 291 1175 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26507654 JRNL DOI 10.1074/JBC.M115.691659 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 85156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4575 - 4.7929 1.00 2832 162 0.1531 0.1792 REMARK 3 2 4.7929 - 3.8137 1.00 2803 149 0.1307 0.1439 REMARK 3 3 3.8137 - 3.3343 1.00 2772 166 0.1304 0.1398 REMARK 3 4 3.3343 - 3.0307 1.00 2784 155 0.1434 0.1359 REMARK 3 5 3.0307 - 2.8142 1.00 2795 122 0.1502 0.1637 REMARK 3 6 2.8142 - 2.6487 1.00 2774 121 0.1507 0.1782 REMARK 3 7 2.6487 - 2.5163 0.99 2791 148 0.1484 0.1674 REMARK 3 8 2.5163 - 2.4070 0.99 2740 140 0.1481 0.1841 REMARK 3 9 2.4070 - 2.3145 0.99 2746 140 0.1463 0.1877 REMARK 3 10 2.3145 - 2.2347 0.99 2722 141 0.1497 0.1736 REMARK 3 11 2.2347 - 2.1650 0.98 2758 137 0.1448 0.1730 REMARK 3 12 2.1650 - 2.1031 0.98 2712 149 0.1408 0.1949 REMARK 3 13 2.1031 - 2.0478 0.98 2678 146 0.1533 0.1826 REMARK 3 14 2.0478 - 1.9979 0.98 2751 127 0.1510 0.1822 REMARK 3 15 1.9979 - 1.9526 0.97 2664 160 0.1550 0.1982 REMARK 3 16 1.9526 - 1.9110 0.97 2702 135 0.1554 0.1919 REMARK 3 17 1.9110 - 1.8728 0.97 2672 150 0.1595 0.2047 REMARK 3 18 1.8728 - 1.8375 0.97 2677 142 0.1559 0.2057 REMARK 3 19 1.8375 - 1.8047 0.96 2678 129 0.1565 0.2046 REMARK 3 20 1.8047 - 1.7742 0.96 2644 155 0.1643 0.1962 REMARK 3 21 1.7742 - 1.7456 0.96 2646 130 0.1692 0.2065 REMARK 3 22 1.7456 - 1.7187 0.96 2653 142 0.1684 0.2132 REMARK 3 23 1.7187 - 1.6935 0.96 2634 125 0.1660 0.2048 REMARK 3 24 1.6935 - 1.6696 0.95 2650 139 0.1704 0.2079 REMARK 3 25 1.6696 - 1.6471 0.95 2606 141 0.1748 0.2075 REMARK 3 26 1.6471 - 1.6257 0.95 2598 152 0.1800 0.2522 REMARK 3 27 1.6257 - 1.6054 0.95 2663 132 0.1880 0.2268 REMARK 3 28 1.6054 - 1.5860 0.94 2528 153 0.1953 0.2538 REMARK 3 29 1.5860 - 1.5676 0.94 2592 142 0.2038 0.2581 REMARK 3 30 1.5676 - 1.5500 0.94 2622 139 0.2269 0.2445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5789 REMARK 3 ANGLE : 1.118 7892 REMARK 3 CHIRALITY : 0.046 879 REMARK 3 PLANARITY : 0.006 1014 REMARK 3 DIHEDRAL : 12.278 2152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.1645 -17.5881 -43.8681 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0445 REMARK 3 T33: 0.0601 T12: -0.0005 REMARK 3 T13: 0.0048 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2323 L22: 0.2164 REMARK 3 L33: 0.2984 L12: -0.0333 REMARK 3 L13: 0.0267 L23: -0.0579 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0209 S13: -0.0039 REMARK 3 S21: -0.0303 S22: -0.0028 S23: -0.0005 REMARK 3 S31: -0.0023 S32: 0.0017 S33: -0.0058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 19.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3VDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 MICROL OF PROTEIN SOLUTION AT 28 REMARK 280 MG/ML MIXED WITH 1.8 MICROL OF RESERVOIR SOLUTION (0.1 M SODIUM REMARK 280 CACODYLATE PH 6.3 TO 7.1, 0.2 M CALCIUM ACETATE, 25% PEG8K), REMARK 280 THEN SOAKING CRYSTALS IN RESERVOIR SOLUTION SUPPLEMENTED WITH 10 REMARK 280 MM CELLOTETRAOSE FOR 2 H. CRYOPROTECTANT = PARATONE-N OIL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.52900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 7 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 262 O HOH B 501 2.11 REMARK 500 O HOH B 578 O HOH B 737 2.14 REMARK 500 O HOH B 874 O HOH B 900 2.14 REMARK 500 O HOH A 873 O HOH A 903 2.15 REMARK 500 O4 BGC D 1 O5 BGC D 2 2.16 REMARK 500 O HOH B 809 O HOH B 874 2.16 REMARK 500 OD2 ASP A 288 O HOH A 501 2.17 REMARK 500 OG SER A 119 O HOH A 502 2.17 REMARK 500 O HOH A 531 O HOH A 920 2.18 REMARK 500 O HOH A 737 O HOH A 824 2.18 REMARK 500 O HOH B 514 O HOH B 542 2.19 REMARK 500 O HOH B 503 O HOH B 939 2.19 REMARK 500 O HOH A 682 O HOH B 517 2.19 REMARK 500 O HOH B 545 O HOH B 763 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 250 O1 BGC D 1 1655 1.28 REMARK 500 O HOH A 683 O HOH B 959 2544 2.12 REMARK 500 O HOH A 962 O HOH B 501 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 29 -97.95 -121.53 REMARK 500 HIS A 112 -91.13 -104.22 REMARK 500 ALA A 116 -145.09 89.25 REMARK 500 ASN A 161 -78.70 -83.64 REMARK 500 ALA A 211 14.39 58.82 REMARK 500 LYS A 214 19.89 -142.06 REMARK 500 THR A 272 -93.73 32.94 REMARK 500 ASP A 288 51.87 29.89 REMARK 500 SER A 319 -165.31 -114.86 REMARK 500 MET A 325 -50.38 75.27 REMARK 500 THR B 29 -97.24 -120.96 REMARK 500 HIS B 112 -90.57 -105.42 REMARK 500 ALA B 116 -141.43 90.58 REMARK 500 ASP B 152 -169.43 -76.93 REMARK 500 ASN B 161 -79.23 -85.88 REMARK 500 ALA B 211 12.35 59.34 REMARK 500 ASP B 288 50.25 31.57 REMARK 500 SER B 319 -164.06 -114.27 REMARK 500 MET B 325 -50.80 74.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 230 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 994 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 988 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 989 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 990 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 991 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 992 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 993 DISTANCE = 10.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 ASP A 86 OD2 53.7 REMARK 620 3 HOH A 511 O 80.6 133.7 REMARK 620 4 HOH A 537 O 119.9 66.3 157.7 REMARK 620 5 HOH A 612 O 77.4 86.7 90.6 101.7 REMARK 620 6 HOH A 617 O 154.5 151.3 75.0 85.4 95.3 REMARK 620 7 HOH A 815 O 107.3 97.2 88.9 77.2 175.1 79.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 272 O REMARK 620 2 HOH A 568 O 143.7 REMARK 620 3 HOH A 592 O 76.7 81.3 REMARK 620 4 HOH A 618 O 69.8 140.3 137.6 REMARK 620 5 HOH A 649 O 108.0 93.6 75.0 91.2 REMARK 620 6 HOH A 742 O 81.5 79.1 109.7 90.5 170.4 REMARK 620 7 HOH A 923 O 136.4 71.9 146.5 69.1 86.9 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 632 O REMARK 620 2 GLU B 216 OE1 83.0 REMARK 620 3 GLU B 216 OE2 133.3 55.1 REMARK 620 4 ASN B 217 OD1 90.5 78.3 99.0 REMARK 620 5 HOH B 739 O 150.5 124.5 76.1 85.8 REMARK 620 6 HOH B 780 O 74.4 146.8 152.4 77.9 76.3 REMARK 620 7 HOH B 848 O 82.5 106.1 89.8 171.0 97.6 94.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VDH RELATED DB: PDB REMARK 900 APOENZYME REMARK 900 RELATED ID: 5D9M RELATED DB: PDB REMARK 900 RELATED ID: 5D9N RELATED DB: PDB REMARK 900 RELATED ID: 5D9P RELATED DB: PDB DBREF 5D9O A 2 353 UNP O06842 O06842_PREBR 573 924 DBREF 5D9O B 2 353 UNP O06842 O06842_PREBR 573 924 SEQADV 5D9O MET A 1 UNP O06842 INITIATING METHIONINE SEQADV 5D9O ALA A 280 UNP O06842 GLU 851 ENGINEERED MUTATION SEQADV 5D9O MET B 1 UNP O06842 INITIATING METHIONINE SEQADV 5D9O ALA B 280 UNP O06842 GLU 851 ENGINEERED MUTATION SEQRES 1 A 353 MET ILE ASN GLN ASN ALA THR TYR MET GLU GLU SER ALA SEQRES 2 A 353 GLN SER ALA VAL ASP ASN PHE GLY LEU GLY PHE ASN LEU SEQRES 3 A 353 GLY ASN THR LEU ASP ALA ASN GLY CYS GLY THR GLY LYS SEQRES 4 A 353 PRO VAL ALA THR TYR GLU THR PHE TRP GLY GLN PRO GLU SEQRES 5 A 353 THR THR GLN ASP MET MET THR PHE LEU MET GLN ASN GLY SEQRES 6 A 353 PHE ASN ALA VAL ARG ILE PRO VAL THR TRP TYR GLU HIS SEQRES 7 A 353 MET ASP ALA GLU GLY ASN VAL ASP GLU ALA TRP MET MET SEQRES 8 A 353 ARG VAL LYS ALA ILE VAL GLU TYR ALA MET ASN ALA GLY SEQRES 9 A 353 LEU TYR ALA ILE VAL ASN VAL HIS HIS ASP THR ALA ALA SEQRES 10 A 353 GLY SER GLY ALA TRP ILE LYS ALA ASP THR ASP VAL TYR SEQRES 11 A 353 ALA ALA THR LYS GLU LYS PHE LYS LYS LEU TRP THR GLN SEQRES 12 A 353 ILE ALA ASN ALA LEU ALA ASP TYR ASP GLN HIS LEU LEU SEQRES 13 A 353 PHE GLU GLY TYR ASN GLU MET LEU ASP GLY ASN ASN SER SEQRES 14 A 353 TRP ASP GLU PRO GLN LYS ALA SER GLY TYR GLU ALA LEU SEQRES 15 A 353 ASN ASN TYR ALA GLN ASP PHE VAL ASP ALA VAL ARG ALA SEQRES 16 A 353 THR GLY GLY ASN ASN ALA THR ARG ASN LEU ILE VAL ASN SEQRES 17 A 353 THR TYR ALA ALA ALA LYS GLY GLU ASN VAL LEU ASN ASN SEQRES 18 A 353 PHE MET LEU PRO THR ASP ALA VAL ASN ASN HIS LEU ILE SEQRES 19 A 353 VAL GLN VAL HIS SER TYR ASP PRO TRP ASN PHE PHE ASN SEQRES 20 A 353 THR LYS THR THR TRP ASP SER GLU CYS HIS ASN THR LEU SEQRES 21 A 353 THR GLU ILE PHE SER ALA LEU SER LYS LYS PHE THR THR SEQRES 22 A 353 ILE PRO TYR ILE ILE GLY ALA TYR GLY THR HIS GLY GLU SEQRES 23 A 353 SER ASP ILE SER VAL SER LYS SER SER PRO ALA GLU LYS SEQRES 24 A 353 ILE LYS LEU ALA ALA ASP GLN ALA ALA ASP MET VAL LYS SEQRES 25 A 353 LEU ALA LYS ASP HIS HIS SER ALA THR PHE TYR TRP MET SEQRES 26 A 353 SER ILE PHE ASP GLY SER ASP ARG ILE GLN PRO GLN TRP SEQRES 27 A 353 SER LEU PRO THR VAL VAL GLU ALA MET GLN GLU ALA TYR SEQRES 28 A 353 ASN ASN SEQRES 1 B 353 MET ILE ASN GLN ASN ALA THR TYR MET GLU GLU SER ALA SEQRES 2 B 353 GLN SER ALA VAL ASP ASN PHE GLY LEU GLY PHE ASN LEU SEQRES 3 B 353 GLY ASN THR LEU ASP ALA ASN GLY CYS GLY THR GLY LYS SEQRES 4 B 353 PRO VAL ALA THR TYR GLU THR PHE TRP GLY GLN PRO GLU SEQRES 5 B 353 THR THR GLN ASP MET MET THR PHE LEU MET GLN ASN GLY SEQRES 6 B 353 PHE ASN ALA VAL ARG ILE PRO VAL THR TRP TYR GLU HIS SEQRES 7 B 353 MET ASP ALA GLU GLY ASN VAL ASP GLU ALA TRP MET MET SEQRES 8 B 353 ARG VAL LYS ALA ILE VAL GLU TYR ALA MET ASN ALA GLY SEQRES 9 B 353 LEU TYR ALA ILE VAL ASN VAL HIS HIS ASP THR ALA ALA SEQRES 10 B 353 GLY SER GLY ALA TRP ILE LYS ALA ASP THR ASP VAL TYR SEQRES 11 B 353 ALA ALA THR LYS GLU LYS PHE LYS LYS LEU TRP THR GLN SEQRES 12 B 353 ILE ALA ASN ALA LEU ALA ASP TYR ASP GLN HIS LEU LEU SEQRES 13 B 353 PHE GLU GLY TYR ASN GLU MET LEU ASP GLY ASN ASN SER SEQRES 14 B 353 TRP ASP GLU PRO GLN LYS ALA SER GLY TYR GLU ALA LEU SEQRES 15 B 353 ASN ASN TYR ALA GLN ASP PHE VAL ASP ALA VAL ARG ALA SEQRES 16 B 353 THR GLY GLY ASN ASN ALA THR ARG ASN LEU ILE VAL ASN SEQRES 17 B 353 THR TYR ALA ALA ALA LYS GLY GLU ASN VAL LEU ASN ASN SEQRES 18 B 353 PHE MET LEU PRO THR ASP ALA VAL ASN ASN HIS LEU ILE SEQRES 19 B 353 VAL GLN VAL HIS SER TYR ASP PRO TRP ASN PHE PHE ASN SEQRES 20 B 353 THR LYS THR THR TRP ASP SER GLU CYS HIS ASN THR LEU SEQRES 21 B 353 THR GLU ILE PHE SER ALA LEU SER LYS LYS PHE THR THR SEQRES 22 B 353 ILE PRO TYR ILE ILE GLY ALA TYR GLY THR HIS GLY GLU SEQRES 23 B 353 SER ASP ILE SER VAL SER LYS SER SER PRO ALA GLU LYS SEQRES 24 B 353 ILE LYS LEU ALA ALA ASP GLN ALA ALA ASP MET VAL LYS SEQRES 25 B 353 LEU ALA LYS ASP HIS HIS SER ALA THR PHE TYR TRP MET SEQRES 26 B 353 SER ILE PHE ASP GLY SER ASP ARG ILE GLN PRO GLN TRP SEQRES 27 B 353 SER LEU PRO THR VAL VAL GLU ALA MET GLN GLU ALA TYR SEQRES 28 B 353 ASN ASN HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET CA A 405 1 HET CA A 406 1 HET CA B 405 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 BGC 8(C6 H12 O6) FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *987(H2 O) HELIX 1 AA1 SER A 12 GLY A 21 1 10 HELIX 2 AA2 PRO A 40 THR A 46 1 7 HELIX 3 AA3 THR A 54 ASN A 64 1 11 HELIX 4 AA4 TRP A 75 MET A 79 5 5 HELIX 5 AA5 ASP A 86 ALA A 103 1 18 HELIX 6 AA6 ASP A 126 LEU A 148 1 23 HELIX 7 AA7 ALA A 176 THR A 196 1 21 HELIX 8 AA8 GLY A 197 THR A 202 5 6 HELIX 9 AA9 TYR A 210 ALA A 213 5 4 HELIX 10 AB1 GLY A 215 ASN A 221 1 7 HELIX 11 AB2 ASN A 244 LYS A 249 1 6 HELIX 12 AB3 ASP A 253 THR A 272 1 20 HELIX 13 AB4 GLY A 285 ILE A 289 5 5 HELIX 14 AB5 PRO A 296 HIS A 317 1 22 HELIX 15 AB6 ASP A 329 GLN A 335 5 7 HELIX 16 AB7 LEU A 340 ASN A 353 1 14 HELIX 17 AB8 SER B 12 GLY B 21 1 10 HELIX 18 AB9 PRO B 40 THR B 46 1 7 HELIX 19 AC1 THR B 54 ASN B 64 1 11 HELIX 20 AC2 TRP B 75 MET B 79 5 5 HELIX 21 AC3 ASP B 86 GLY B 104 1 19 HELIX 22 AC4 ASP B 126 LEU B 148 1 23 HELIX 23 AC5 SER B 177 ALA B 195 1 19 HELIX 24 AC6 THR B 196 THR B 202 5 7 HELIX 25 AC7 TYR B 210 ALA B 213 5 4 HELIX 26 AC8 GLY B 215 ASN B 221 1 7 HELIX 27 AC9 ASN B 244 LYS B 249 1 6 HELIX 28 AD1 ASP B 253 PHE B 271 1 19 HELIX 29 AD2 GLY B 285 ILE B 289 5 5 HELIX 30 AD3 PRO B 296 HIS B 317 1 22 HELIX 31 AD4 ASP B 329 GLN B 335 5 7 HELIX 32 AD5 LEU B 340 ASN B 353 1 14 SHEET 1 AA1 9 LEU A 22 ASN A 25 0 SHEET 2 AA1 9 PHE A 66 ILE A 71 1 O ARG A 70 N PHE A 24 SHEET 3 AA1 9 TYR A 106 ASN A 110 1 O ILE A 108 N ILE A 71 SHEET 4 AA1 9 LEU A 155 GLU A 158 1 O LEU A 156 N ALA A 107 SHEET 5 AA1 9 LEU A 205 ASN A 208 1 O ILE A 206 N PHE A 157 SHEET 6 AA1 9 LEU A 233 SER A 239 1 O ILE A 234 N VAL A 207 SHEET 7 AA1 9 TYR A 276 TYR A 281 1 O ALA A 280 N SER A 239 SHEET 8 AA1 9 THR A 321 TRP A 324 1 O TRP A 324 N TYR A 281 SHEET 9 AA1 9 LEU A 22 ASN A 25 1 N ASN A 25 O TYR A 323 SHEET 1 AA2 9 LEU B 22 ASN B 25 0 SHEET 2 AA2 9 PHE B 66 ILE B 71 1 O ARG B 70 N PHE B 24 SHEET 3 AA2 9 TYR B 106 ASN B 110 1 O ILE B 108 N ILE B 71 SHEET 4 AA2 9 LEU B 155 GLU B 158 1 O LEU B 156 N ALA B 107 SHEET 5 AA2 9 LEU B 205 ASN B 208 1 O ILE B 206 N PHE B 157 SHEET 6 AA2 9 LEU B 233 SER B 239 1 O ILE B 234 N VAL B 207 SHEET 7 AA2 9 TYR B 276 TYR B 281 1 O ALA B 280 N SER B 239 SHEET 8 AA2 9 THR B 321 TRP B 324 1 O TRP B 324 N TYR B 281 SHEET 9 AA2 9 LEU B 22 ASN B 25 1 N ASN B 25 O TYR B 323 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.38 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.44 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.43 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.38 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.44 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.42 LINK OD1 ASP A 86 CA CA A 406 1555 1555 2.39 LINK OD2 ASP A 86 CA CA A 406 1555 1555 2.36 LINK O THR A 272 CA CA A 405 1555 1555 2.38 LINK CA CA A 405 O HOH A 568 1555 1555 2.39 LINK CA CA A 405 O HOH A 592 1555 1555 2.39 LINK CA CA A 405 O HOH A 618 1555 1555 2.39 LINK CA CA A 405 O HOH A 649 1555 1555 2.39 LINK CA CA A 405 O HOH A 742 1555 1555 2.40 LINK CA CA A 405 O HOH A 923 1555 1555 2.39 LINK CA CA A 406 O HOH A 511 1555 1455 2.39 LINK CA CA A 406 O HOH A 537 1555 1555 2.40 LINK CA CA A 406 O HOH A 612 1555 1455 2.39 LINK CA CA A 406 O HOH A 617 1555 1455 2.40 LINK CA CA A 406 O HOH A 815 1555 1555 2.38 LINK O HOH A 632 CA CA B 405 1455 1555 2.39 LINK OE1 GLU B 216 CA CA B 405 1555 1555 2.37 LINK OE2 GLU B 216 CA CA B 405 1555 1555 2.35 LINK OD1 ASN B 217 CA CA B 405 1555 1555 2.36 LINK CA CA B 405 O HOH B 739 1555 1555 2.39 LINK CA CA B 405 O HOH B 780 1555 1555 2.40 LINK CA CA B 405 O HOH B 848 1555 1555 2.38 CISPEP 1 ASP A 241 PRO A 242 0 -3.38 CISPEP 2 GLN A 335 PRO A 336 0 -10.52 CISPEP 3 ASP B 241 PRO B 242 0 -2.30 CISPEP 4 GLN B 335 PRO B 336 0 -8.46 CRYST1 49.180 85.058 74.978 90.00 101.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020333 0.000000 0.004100 0.00000 SCALE2 0.000000 0.011757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013606 0.00000