HEADER TRANSFERASE 19-AUG-15 5D9U OBSLTE 27-APR-22 5D9U 6MFM TITLE STRUCTURE OF THIAMINE-MONOPHOSPHATE KINASE FROM ACINETOBACTER TITLE 2 BAUMANNII IN COMPLEX WITH ADENOSINE DIPHOSPHATE (ADP) AND THIAMINE TITLE 3 DIPHOSPHATE (TPP), ORTHORHOMBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE-MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIAMINE-PHOSPHATE KINASE; COMPND 5 EC: 2.7.4.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: THIL, ABUW_0092; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ACBAC.17905.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-APR-22 5D9U 1 OBSLTE LINK REVDAT 3 03-APR-19 5D9U 1 JRNL REVDAT 2 22-NOV-17 5D9U 1 REMARK REVDAT 1 02-SEP-15 5D9U 0 JRNL AUTH A.H.SULLIVAN,D.M.DRANOW,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS, JRNL AUTH 2 J.ABENDROTH JRNL TITL CRYSTAL STRUCTURES OF THIAMINE MONOPHOSPHATE KINASE FROM JRNL TITL 2 ACINETOBACTER BAUMANNII IN COMPLEX WITH SUBSTRATES AND JRNL TITL 3 PRODUCTS. JRNL REF SCI REP V. 9 4392 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30867460 JRNL DOI 10.1038/S41598-019-40558-X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2139: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3501 - 4.6837 1.00 3320 123 0.1585 0.1926 REMARK 3 2 4.6837 - 3.7184 1.00 3152 138 0.1343 0.1800 REMARK 3 3 3.7184 - 3.2485 1.00 3123 130 0.1450 0.1952 REMARK 3 4 3.2485 - 2.9516 1.00 3081 149 0.1628 0.2176 REMARK 3 5 2.9516 - 2.7401 1.00 3099 131 0.1623 0.2017 REMARK 3 6 2.7401 - 2.5786 1.00 3081 135 0.1668 0.1973 REMARK 3 7 2.5786 - 2.4495 1.00 3073 136 0.1708 0.2273 REMARK 3 8 2.4495 - 2.3428 1.00 3042 149 0.1681 0.2187 REMARK 3 9 2.3428 - 2.2527 1.00 3025 171 0.1733 0.2357 REMARK 3 10 2.2527 - 2.1749 1.00 3032 143 0.1784 0.2123 REMARK 3 11 2.1749 - 2.1069 1.00 3050 127 0.1848 0.2622 REMARK 3 12 2.1069 - 2.0467 1.00 3053 141 0.1913 0.2324 REMARK 3 13 2.0467 - 1.9928 0.99 2994 132 0.2006 0.2590 REMARK 3 14 1.9928 - 1.9442 0.98 3028 127 0.2246 0.2870 REMARK 3 15 1.9442 - 1.9000 0.97 2952 118 0.2259 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4865 REMARK 3 ANGLE : 0.879 6667 REMARK 3 CHIRALITY : 0.056 755 REMARK 3 PLANARITY : 0.006 912 REMARK 3 DIHEDRAL : 11.644 2911 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2581 28.1341 9.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.2332 REMARK 3 T33: 0.2789 T12: 0.0510 REMARK 3 T13: -0.0408 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.6565 L22: 1.1169 REMARK 3 L33: 3.5556 L12: 0.4829 REMARK 3 L13: -2.8902 L23: -1.2126 REMARK 3 S TENSOR REMARK 3 S11: 0.1951 S12: 0.1037 S13: 0.2094 REMARK 3 S21: -0.2310 S22: -0.1700 S23: 0.0896 REMARK 3 S31: -0.4895 S32: 0.1035 S33: -0.0394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2137 13.8225 10.0891 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.1098 REMARK 3 T33: 0.1568 T12: -0.0055 REMARK 3 T13: -0.0353 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.6175 L22: 2.2203 REMARK 3 L33: 2.0462 L12: 0.6664 REMARK 3 L13: -0.9698 L23: 0.4398 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.0026 S13: 0.0877 REMARK 3 S21: -0.0471 S22: -0.0019 S23: -0.1249 REMARK 3 S31: -0.1314 S32: 0.1167 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4670 20.3008 1.3314 REMARK 3 T TENSOR REMARK 3 T11: 0.1854 T22: 0.1384 REMARK 3 T33: 0.2032 T12: -0.0051 REMARK 3 T13: 0.0118 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.7696 L22: 6.5557 REMARK 3 L33: 5.6371 L12: 4.0728 REMARK 3 L13: 1.2072 L23: 0.6696 REMARK 3 S TENSOR REMARK 3 S11: -0.2296 S12: 0.1157 S13: 0.0366 REMARK 3 S21: -0.6229 S22: 0.2589 S23: -0.1359 REMARK 3 S31: -0.3597 S32: 0.0103 S33: -0.0659 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8198 3.3328 9.6472 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.1284 REMARK 3 T33: 0.1188 T12: -0.0071 REMARK 3 T13: -0.0265 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9957 L22: 2.0517 REMARK 3 L33: 0.7997 L12: 0.1324 REMARK 3 L13: -0.1930 L23: 0.5926 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.1115 S13: 0.0252 REMARK 3 S21: 0.0963 S22: -0.0202 S23: 0.0521 REMARK 3 S31: 0.0476 S32: -0.0449 S33: 0.0579 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7651 -13.7924 4.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.1459 REMARK 3 T33: 0.2441 T12: -0.0100 REMARK 3 T13: 0.0150 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 4.9097 L22: 3.4409 REMARK 3 L33: 5.0461 L12: 0.7580 REMARK 3 L13: -3.3615 L23: -0.8811 REMARK 3 S TENSOR REMARK 3 S11: -0.3208 S12: 0.1619 S13: -0.3801 REMARK 3 S21: -0.1129 S22: 0.2863 S23: -0.4519 REMARK 3 S31: 0.5024 S32: 0.2158 S33: 0.1126 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8385 -8.2882 6.2024 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1495 REMARK 3 T33: 0.1665 T12: -0.0342 REMARK 3 T13: 0.0287 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 0.0913 L22: 3.8541 REMARK 3 L33: 2.2523 L12: 0.3384 REMARK 3 L13: -0.3643 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.1977 S12: 0.3602 S13: -0.2559 REMARK 3 S21: -0.1183 S22: 0.0460 S23: -0.0881 REMARK 3 S31: 0.2459 S32: -0.1432 S33: 0.0548 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3812 -12.3320 9.0738 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.1151 REMARK 3 T33: 0.2053 T12: -0.0423 REMARK 3 T13: 0.0411 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 5.2512 L22: 2.7425 REMARK 3 L33: 4.6371 L12: -0.1108 REMARK 3 L13: 0.7357 L23: 0.0130 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.2110 S13: -0.3442 REMARK 3 S21: 0.3557 S22: -0.0441 S23: 0.1653 REMARK 3 S31: 0.3005 S32: -0.2157 S33: 0.1191 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7384 -11.9372 14.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.4263 T22: 0.2988 REMARK 3 T33: 0.3817 T12: 0.0183 REMARK 3 T13: -0.1682 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.5039 L22: 4.8115 REMARK 3 L33: 2.1849 L12: 1.5490 REMARK 3 L13: 1.0554 L23: 3.2335 REMARK 3 S TENSOR REMARK 3 S11: 0.2860 S12: 0.0316 S13: -0.2648 REMARK 3 S21: 1.1121 S22: 0.0814 S23: -1.1473 REMARK 3 S31: 0.2630 S32: 0.0248 S33: -0.3561 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5890 8.1718 26.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.3100 T22: 0.2308 REMARK 3 T33: 0.1903 T12: -0.0022 REMARK 3 T13: 0.0167 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.8232 L22: 2.1202 REMARK 3 L33: 3.5707 L12: 0.9870 REMARK 3 L13: 1.6699 L23: -0.7124 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: -0.3815 S13: -0.1762 REMARK 3 S21: 0.5839 S22: -0.1200 S23: 0.1740 REMARK 3 S31: 0.3254 S32: -0.0287 S33: 0.1689 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8784 22.3884 26.9054 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1603 REMARK 3 T33: 0.1420 T12: 0.0125 REMARK 3 T13: -0.0656 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.0647 L22: 2.3059 REMARK 3 L33: 1.4332 L12: -0.2746 REMARK 3 L13: -0.3221 L23: 0.8986 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.1535 S13: -0.0049 REMARK 3 S21: 0.2839 S22: 0.0349 S23: -0.1586 REMARK 3 S31: 0.0679 S32: 0.1335 S33: -0.0082 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6711 15.6177 35.9035 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.2492 REMARK 3 T33: 0.1986 T12: 0.0554 REMARK 3 T13: -0.0739 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.1657 L22: 2.2307 REMARK 3 L33: 1.2358 L12: -0.7989 REMARK 3 L13: 0.0721 L23: 0.1898 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: -0.5718 S13: -0.1776 REMARK 3 S21: 0.9195 S22: 0.2858 S23: -0.2119 REMARK 3 S31: 0.1145 S32: 0.2296 S33: -0.0328 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7962 30.2880 25.3764 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1592 REMARK 3 T33: 0.1251 T12: 0.0062 REMARK 3 T13: -0.0478 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.4974 L22: 2.2124 REMARK 3 L33: 1.1582 L12: 0.2909 REMARK 3 L13: -0.1809 L23: 0.9762 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.1489 S13: 0.0174 REMARK 3 S21: 0.0536 S22: 0.0341 S23: 0.0888 REMARK 3 S31: -0.1511 S32: 0.0619 S33: 0.0077 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0887 32.3063 36.0436 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.2266 REMARK 3 T33: 0.0861 T12: 0.0060 REMARK 3 T13: -0.0546 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.3343 L22: 2.3259 REMARK 3 L33: 1.6876 L12: 0.3177 REMARK 3 L13: 0.4887 L23: 0.7869 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.4212 S13: -0.1883 REMARK 3 S21: 0.4694 S22: 0.0899 S23: -0.0725 REMARK 3 S31: 0.2031 S32: 0.0753 S33: -0.1316 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9839 45.0532 28.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.3486 T22: 0.1767 REMARK 3 T33: 0.1424 T12: -0.0296 REMARK 3 T13: -0.0023 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 3.3276 L22: 2.7732 REMARK 3 L33: 1.8082 L12: -0.0723 REMARK 3 L13: 0.5255 L23: 0.8600 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.1972 S13: 0.2880 REMARK 3 S21: -0.1507 S22: 0.0248 S23: -0.0660 REMARK 3 S31: -0.3951 S32: 0.1399 S33: 0.0066 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6136 48.5235 28.0051 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.1663 REMARK 3 T33: 0.2062 T12: 0.0145 REMARK 3 T13: -0.0338 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 4.3766 L22: 2.6824 REMARK 3 L33: 2.3824 L12: 0.3130 REMARK 3 L13: -0.0031 L23: 0.7184 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.0677 S13: 0.2962 REMARK 3 S21: -0.1383 S22: -0.1343 S23: 0.3205 REMARK 3 S31: -0.4918 S32: 0.0113 S33: 0.0925 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 289 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8930 48.9056 23.3691 REMARK 3 T TENSOR REMARK 3 T11: 0.8324 T22: 0.4128 REMARK 3 T33: 0.5068 T12: -0.1226 REMARK 3 T13: 0.2603 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.2516 L22: 4.4834 REMARK 3 L33: 2.0422 L12: -0.9632 REMARK 3 L13: -0.6312 L23: 3.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.1293 S13: 0.0568 REMARK 3 S21: -1.1933 S22: 0.3423 S23: -0.6406 REMARK 3 S31: -0.1018 S32: 0.2550 S33: -0.2664 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 3.15 REMARK 200 STARTING MODEL: 5CC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MCSG1 SCREEN, B1: 20% PEG REMARK 280 4000, 600MM NACL, 100MM MES/NAOH; ANPHA.17905.A.B1.PW37686 AT REMARK 280 30MG/ML, 5MM EACH MGCL2, ADP AND TPP; CRYO: 20% EG, 5MM MGCL2/ REMARK 280 ADP/TPP; TRAY 264489B1, PUCK UTE6-14, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.57500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -220.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 5 OG REMARK 470 SER A 15 OG REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 HIS A 299 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 18 CG OD1 OD2 REMARK 470 GLN B 90 CG CD OE1 NE2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLN B 237 CG CD OE1 NE2 REMARK 470 GLN B 259 CG CD OE1 NE2 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLN B 266 CG CD OE1 NE2 REMARK 470 GLN B 268 CG CD OE1 NE2 REMARK 470 GLN B 278 CG CD OE1 NE2 REMARK 470 GLN B 282 CG CD OE1 NE2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 GLN B 297 CG CD OE1 NE2 REMARK 470 HIS B 299 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 302 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 201 O HOH A 501 2.07 REMARK 500 NH1 ARG B 219 OD1 ASP B 293 2.14 REMARK 500 NZ LYS A 263 O HOH A 502 2.14 REMARK 500 O HOH B 620 O HOH B 667 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 -132.10 -130.88 REMARK 500 ASP A 18 25.93 -79.66 REMARK 500 HIS A 80 -51.46 -129.17 REMARK 500 ALA B 2 -167.09 -114.62 REMARK 500 ASN B 12 46.06 -144.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 14 SER A 15 -137.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 411 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD1 REMARK 620 2 ADP A 405 O1B 94.6 REMARK 620 3 ASP B 71 OD1 97.3 91.5 REMARK 620 4 ASP B 198 OD1 84.1 178.1 90.1 REMARK 620 5 HOH B 611 O 87.7 95.2 171.4 83.4 REMARK 620 6 HOH B 628 O 168.4 93.8 90.4 87.3 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 42 O REMARK 620 2 ASP A 43 OD1 73.7 REMARK 620 3 HOH A 584 O 95.6 86.1 REMARK 620 4 HOH B 567 O 162.2 111.5 101.7 REMARK 620 5 HOH B 569 O 90.4 69.1 151.8 76.4 REMARK 620 6 HOH B 631 O 77.8 141.5 122.3 89.2 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD2 REMARK 620 2 ASP A 71 OD2 88.7 REMARK 620 3 ADP A 409 O1B 99.4 93.0 REMARK 620 4 HOH A 528 O 84.0 89.3 176.0 REMARK 620 5 HOH A 639 O 167.5 94.6 92.5 84.0 REMARK 620 6 TPP B 401 O1B 89.0 175.7 91.0 86.8 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD1 REMARK 620 2 ADP A 409 O1B 90.4 REMARK 620 3 ADP A 409 O1A 171.5 93.1 REMARK 620 4 ASP B 118 OD2 87.0 174.8 88.9 REMARK 620 5 TPP B 401 O3B 94.7 86.0 93.2 98.7 REMARK 620 6 HOH B 569 O 87.5 86.6 85.1 88.9 172.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASP A 198 OD1 90.7 REMARK 620 3 ADP A 409 O2B 90.2 176.6 REMARK 620 4 HOH A 537 O 164.9 78.8 99.7 REMARK 620 5 HOH A 639 O 88.5 85.6 91.1 80.0 REMARK 620 6 ASP B 26 OD1 98.5 86.8 96.4 91.7 169.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD1 REMARK 620 2 ASP A 118 OD2 46.9 REMARK 620 3 TPP A 410 O1B 71.9 113.4 REMARK 620 4 TPP A 410 O2A 144.2 146.9 97.3 REMARK 620 5 TPP A 410 O3A 123.9 158.8 52.2 53.5 REMARK 620 6 HOH A 620 O 72.6 93.6 90.1 73.4 101.1 REMARK 620 7 HOH B 605 O 129.8 100.5 100.4 85.2 70.8 157.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD1 REMARK 620 2 ADP A 405 O3B 173.7 REMARK 620 3 ADP A 405 O2A 86.0 89.4 REMARK 620 4 TPP A 410 O1B 96.5 87.7 87.9 REMARK 620 5 HOH A 632 O 92.7 82.3 82.8 166.4 REMARK 620 6 ASP B 43 OD1 94.5 89.6 174.3 97.7 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 ASP A 201 OD2 50.9 REMARK 620 3 HOH A 506 O 103.4 55.7 REMARK 620 4 TPP B 401 O2B 90.0 105.0 89.5 REMARK 620 5 TPP B 401 O2A 92.9 140.5 163.5 88.0 REMARK 620 6 HOH B 504 O 173.8 123.0 71.2 92.9 92.6 REMARK 620 7 HOH B 531 O 92.7 77.7 91.0 177.1 90.7 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 405 O3B REMARK 620 2 TPP A 410 O2B 94.8 REMARK 620 3 ASP B 43 OD2 102.5 89.5 REMARK 620 4 ASP B 71 OD2 89.0 175.5 87.4 REMARK 620 5 HOH B 542 O 175.4 85.0 82.1 91.3 REMARK 620 6 HOH B 628 O 91.1 88.0 166.3 94.2 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPP A 410 O1A REMARK 620 2 TPP A 410 O3B 91.1 REMARK 620 3 HOH A 507 O 90.6 91.7 REMARK 620 4 HOH A 588 O 85.1 176.0 87.4 REMARK 620 5 ASP B 201 OD1 99.8 86.9 169.5 94.7 REMARK 620 6 HOH B 519 O 176.2 86.9 86.3 96.9 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 515 O REMARK 620 2 HOH A 632 O 69.9 REMARK 620 3 ALA B 42 O 161.2 96.2 REMARK 620 4 ASP B 43 OD1 109.3 76.8 78.4 REMARK 620 5 HOH B 578 O 101.1 155.3 96.6 85.2 REMARK 620 6 HOH B 624 O 88.3 86.7 77.9 149.4 116.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 556 O REMARK 620 2 ASP B 118 OD1 97.8 REMARK 620 3 ASP B 118 OD2 128.6 46.8 REMARK 620 4 TPP B 401 O1A 82.6 147.1 148.3 REMARK 620 5 TPP B 401 O3A 72.3 155.4 122.5 55.7 REMARK 620 6 TPP B 401 O3B 105.0 111.6 69.7 99.8 52.8 REMARK 620 7 HOH B 580 O 159.6 91.3 70.2 79.9 105.7 88.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CC8 RELATED DB: PDB REMARK 900 5CC8 IS THE ORIGINAL AMPPNP-BOUND STRUCTURE, ALONG WITH ANOMALOUS REMARK 900 DATA OF AN IODIDE DATA SET REMARK 900 RELATED ID: ACBAC.17905.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5CM7 RELATED DB: PDB REMARK 900 5CM7 IS THE ADP/TPP BOUND STRUCTURE IN A MONOCLINIC CRYSTAL FORM DBREF1 5D9U A 1 305 UNP A0A0D5YC82_ACIBA DBREF2 5D9U A A0A0D5YC82 1 305 DBREF1 5D9U B 1 305 UNP A0A0D5YC82_ACIBA DBREF2 5D9U B A0A0D5YC82 1 305 SEQADV 5D9U MET A -7 UNP A0A0D5YC8 INITIATING METHIONINE SEQADV 5D9U ALA A -6 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A -5 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A -4 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A -3 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A -2 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A -1 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS A 0 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U MET B -7 UNP A0A0D5YC8 INITIATING METHIONINE SEQADV 5D9U ALA B -6 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B -5 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B -4 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B -3 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B -2 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B -1 UNP A0A0D5YC8 EXPRESSION TAG SEQADV 5D9U HIS B 0 UNP A0A0D5YC8 EXPRESSION TAG SEQRES 1 A 313 MET ALA HIS HIS HIS HIS HIS HIS MET ALA GLU PHE SER SEQRES 2 A 313 ILE ILE ASP GLN TYR PHE ASN ARG GLN SER HIS PRO ASP SEQRES 3 A 313 VAL ALA LEU GLY ILE GLY ASP ASP SER ALA LEU ILE THR SEQRES 4 A 313 PRO PRO PRO ASN GLN GLN LEU VAL ILE CYS ALA ASP THR SEQRES 5 A 313 LEU VAL ALA GLY ARG HIS PHE PRO LEU GLU THR SER PRO SEQRES 6 A 313 HIS ALA ILE GLY TRP LYS SER VAL ALA VAL ASN LEU SER SEQRES 7 A 313 ASP ILE ALA ALA MET GLY ALA LYS PRO HIS SER ILE LEU SEQRES 8 A 313 LEU ALA ILE SER LEU PRO GLN VAL ASP HIS GLU TRP LEU SEQRES 9 A 313 GLU GLY PHE SER GLN GLY ILE TYR ASP CYS CYS ASN GLN SEQRES 10 A 313 PHE GLY VAL ALA LEU ILE GLY GLY ASP THR THR GLN GLY SEQRES 11 A 313 PRO HIS LEU THR ILE THR VAL THR ALA MET GLY TRP ILE SEQRES 12 A 313 GLU THR GLY LYS ALA VAL LEU ARG SER GLY ALA LYS VAL SEQRES 13 A 313 GLY ASP TYR VAL CYS VAL SER GLY GLN ILE GLY ASP ALA SEQRES 14 A 313 ALA TYR GLY LEU GLN HIS LEU GLY HIS SER LEU GLN GLN SEQRES 15 A 313 ARG LEU ASP TYR PRO THR PRO ARG CYS LYS LEU GLY GLU SEQRES 16 A 313 GLU LEU LYS GLY LEU ALA SER SER MET ILE ASP VAL SER SEQRES 17 A 313 ASP GLY LEU ALA GLN ASP LEU GLY HIS ILE LEU LYS ALA SEQRES 18 A 313 SER LYS VAL GLY ALA ARG LEU ILE LEU GLU LYS LEU PRO SEQRES 19 A 313 VAL ASP PRO VAL LEU GLN GLN ILE GLU GLU GLN GLN ARG SEQRES 20 A 313 TRP GLN TYR ALA LEU ALA GLY GLY ASP ASP TYR GLU LEU SEQRES 21 A 313 CYS PHE THR ILE THR PRO GLN ASN TYR GLU LYS LEU LEU SEQRES 22 A 313 GLN LYS GLN LEU ASP VAL LYS ILE THR MET ILE GLY GLN SEQRES 23 A 313 ILE VAL GLU GLN THR LYS LEU THR PHE GLU HIS LEU GLY SEQRES 24 A 313 SER ASP TYR PRO LEU GLN ILE HIS GLY TYR GLN HIS PHE SEQRES 25 A 313 ALA SEQRES 1 B 313 MET ALA HIS HIS HIS HIS HIS HIS MET ALA GLU PHE SER SEQRES 2 B 313 ILE ILE ASP GLN TYR PHE ASN ARG GLN SER HIS PRO ASP SEQRES 3 B 313 VAL ALA LEU GLY ILE GLY ASP ASP SER ALA LEU ILE THR SEQRES 4 B 313 PRO PRO PRO ASN GLN GLN LEU VAL ILE CYS ALA ASP THR SEQRES 5 B 313 LEU VAL ALA GLY ARG HIS PHE PRO LEU GLU THR SER PRO SEQRES 6 B 313 HIS ALA ILE GLY TRP LYS SER VAL ALA VAL ASN LEU SER SEQRES 7 B 313 ASP ILE ALA ALA MET GLY ALA LYS PRO HIS SER ILE LEU SEQRES 8 B 313 LEU ALA ILE SER LEU PRO GLN VAL ASP HIS GLU TRP LEU SEQRES 9 B 313 GLU GLY PHE SER GLN GLY ILE TYR ASP CYS CYS ASN GLN SEQRES 10 B 313 PHE GLY VAL ALA LEU ILE GLY GLY ASP THR THR GLN GLY SEQRES 11 B 313 PRO HIS LEU THR ILE THR VAL THR ALA MET GLY TRP ILE SEQRES 12 B 313 GLU THR GLY LYS ALA VAL LEU ARG SER GLY ALA LYS VAL SEQRES 13 B 313 GLY ASP TYR VAL CYS VAL SER GLY GLN ILE GLY ASP ALA SEQRES 14 B 313 ALA TYR GLY LEU GLN HIS LEU GLY HIS SER LEU GLN GLN SEQRES 15 B 313 ARG LEU ASP TYR PRO THR PRO ARG CYS LYS LEU GLY GLU SEQRES 16 B 313 GLU LEU LYS GLY LEU ALA SER SER MET ILE ASP VAL SER SEQRES 17 B 313 ASP GLY LEU ALA GLN ASP LEU GLY HIS ILE LEU LYS ALA SEQRES 18 B 313 SER LYS VAL GLY ALA ARG LEU ILE LEU GLU LYS LEU PRO SEQRES 19 B 313 VAL ASP PRO VAL LEU GLN GLN ILE GLU GLU GLN GLN ARG SEQRES 20 B 313 TRP GLN TYR ALA LEU ALA GLY GLY ASP ASP TYR GLU LEU SEQRES 21 B 313 CYS PHE THR ILE THR PRO GLN ASN TYR GLU LYS LEU LEU SEQRES 22 B 313 GLN LYS GLN LEU ASP VAL LYS ILE THR MET ILE GLY GLN SEQRES 23 B 313 ILE VAL GLU GLN THR LYS LEU THR PHE GLU HIS LEU GLY SEQRES 24 B 313 SER ASP TYR PRO LEU GLN ILE HIS GLY TYR GLN HIS PHE SEQRES 25 B 313 ALA HET NA A 401 1 HET NA A 402 1 HET MG A 403 1 HET MG A 404 1 HET ADP A 405 27 HET NA A 406 1 HET MG A 407 1 HET NA A 408 1 HET ADP A 409 27 HET TPP A 410 26 HET MG A 411 1 HET TPP B 401 26 HET NA B 402 1 HET NA B 403 1 HET NA B 404 1 HET NA B 405 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 3 NA 8(NA 1+) FORMUL 5 MG 4(MG 2+) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 12 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 19 HOH *452(H2 O) HELIX 1 AA1 ALA A 2 PHE A 11 1 10 HELIX 2 AA2 SER A 56 ALA A 74 1 19 HELIX 3 AA3 ASP A 92 GLY A 111 1 20 HELIX 4 AA4 GLY A 159 HIS A 167 1 9 HELIX 5 AA5 LEU A 172 TYR A 178 1 7 HELIX 6 AA6 ARG A 182 LYS A 190 1 9 HELIX 7 AA7 GLY A 202 LYS A 215 1 14 HELIX 8 AA8 GLU A 223 LEU A 225 5 3 HELIX 9 AA9 ASP A 228 GLN A 233 1 6 HELIX 10 AB1 GLU A 235 GLY A 246 1 12 HELIX 11 AB2 THR A 257 LYS A 267 1 11 HELIX 12 AB3 ALA B 2 PHE B 11 1 10 HELIX 13 AB4 SER B 56 ALA B 74 1 19 HELIX 14 AB5 ASP B 92 PHE B 110 1 19 HELIX 15 AB6 GLY B 159 HIS B 167 1 9 HELIX 16 AB7 LEU B 172 TYR B 178 1 7 HELIX 17 AB8 ARG B 182 LYS B 190 1 9 HELIX 18 AB9 GLY B 202 LYS B 215 1 14 HELIX 19 AC1 GLU B 223 LEU B 225 5 3 HELIX 20 AC2 ASP B 228 GLN B 233 1 6 HELIX 21 AC3 GLU B 235 GLY B 246 1 12 HELIX 22 AC4 THR B 257 LYS B 267 1 11 SHEET 1 AA1 5 ALA A 28 ILE A 30 0 SHEET 2 AA1 5 GLN B 36 VAL B 46 -1 O ILE B 40 N ALA A 28 SHEET 3 AA1 5 THR B 126 GLU B 136 -1 O ILE B 127 N LEU B 45 SHEET 4 AA1 5 LYS B 78 LEU B 88 -1 N HIS B 80 O MET B 132 SHEET 5 AA1 5 ALA B 113 GLN B 121 1 O ASP B 118 N ILE B 86 SHEET 1 AA2 5 ALA A 113 GLN A 121 0 SHEET 2 AA2 5 LYS A 78 LEU A 88 1 N ILE A 86 O ASP A 118 SHEET 3 AA2 5 THR A 126 GLU A 136 -1 O MET A 132 N HIS A 80 SHEET 4 AA2 5 GLN A 36 VAL A 46 -1 N LEU A 45 O ILE A 127 SHEET 5 AA2 5 ALA B 28 ILE B 30 -1 O ALA B 28 N ILE A 40 SHEET 1 AA3 7 SER A 195 ASP A 198 0 SHEET 2 AA3 7 LEU A 252 ILE A 256 -1 O CYS A 253 N ILE A 197 SHEET 3 AA3 7 TYR A 151 SER A 155 -1 N TYR A 151 O ILE A 256 SHEET 4 AA3 7 ILE A 273 VAL A 280 -1 O ILE A 276 N VAL A 152 SHEET 5 AA3 7 GLY A 217 ILE A 221 -1 N ILE A 221 O ILE A 276 SHEET 6 AA3 7 LEU A 285 HIS A 289 1 O GLU A 288 N LEU A 220 SHEET 7 AA3 7 SER A 292 ASP A 293 -1 O SER A 292 N HIS A 289 SHEET 1 AA4 7 SER B 195 ASP B 198 0 SHEET 2 AA4 7 LEU B 252 ILE B 256 -1 O CYS B 253 N ILE B 197 SHEET 3 AA4 7 TYR B 151 SER B 155 -1 N TYR B 151 O ILE B 256 SHEET 4 AA4 7 ILE B 273 VAL B 280 -1 O ILE B 276 N VAL B 152 SHEET 5 AA4 7 GLY B 217 ILE B 221 -1 N GLY B 217 O VAL B 280 SHEET 6 AA4 7 LEU B 285 HIS B 289 1 O GLU B 288 N LEU B 220 SHEET 7 AA4 7 SER B 292 ASP B 293 -1 O SER B 292 N HIS B 289 LINK OD1 ASP A 26 MG MG A 411 1555 1555 2.23 LINK O ALA A 42 NA NA A 408 1555 1555 2.57 LINK OD2 ASP A 43 NA NA A 401 1555 1555 2.11 LINK OD1 ASP A 43 MG MG A 404 1555 1555 2.08 LINK OD1 ASP A 43 NA NA A 408 1555 1555 2.81 LINK OD2 ASP A 71 NA NA A 401 1555 1555 2.15 LINK OD1 ASP A 71 MG MG A 403 1555 1555 2.04 LINK OD1 ASP A 118 NA NA A 406 1555 1555 2.86 LINK OD2 ASP A 118 NA NA A 406 1555 1555 2.59 LINK OD1 ASP A 118 MG MG A 407 1555 1555 2.20 LINK OD1 ASP A 198 MG MG A 403 1555 1555 2.06 LINK OD1 ASP A 201 NA NA A 402 1555 1555 2.25 LINK OD2 ASP A 201 NA NA A 402 1555 1555 2.73 LINK NA NA A 401 O1B ADP A 409 1555 1555 2.21 LINK NA NA A 401 O HOH A 528 1555 1555 2.18 LINK NA NA A 401 O HOH A 639 1555 1555 2.26 LINK NA NA A 401 O1B TPP B 401 1555 1555 2.12 LINK NA NA A 402 O HOH A 506 1555 1555 2.44 LINK NA NA A 402 O2B TPP B 401 1555 1555 2.15 LINK NA NA A 402 O2A TPP B 401 1555 1555 2.04 LINK NA NA A 402 O HOH B 504 1555 1555 2.20 LINK NA NA A 402 O HOH B 531 1555 1555 2.21 LINK MG MG A 403 O2B ADP A 409 1555 1555 2.01 LINK MG MG A 403 O HOH A 537 1555 1555 2.08 LINK MG MG A 403 O HOH A 639 1555 1555 2.17 LINK MG MG A 403 OD1 ASP B 26 1555 1555 2.11 LINK MG MG A 404 O1B ADP A 409 1555 1555 2.28 LINK MG MG A 404 O1A ADP A 409 1555 1555 2.05 LINK MG MG A 404 OD2 ASP B 118 1555 1555 2.13 LINK MG MG A 404 O3B TPP B 401 1555 1555 2.00 LINK MG MG A 404 O HOH B 569 1555 1555 2.18 LINK O3B ADP A 405 MG MG A 407 1555 1555 2.43 LINK O2A ADP A 405 MG MG A 407 1555 1555 2.18 LINK O1B ADP A 405 MG MG A 411 1555 1555 1.95 LINK O3B ADP A 405 NA NA B 404 1555 1555 2.21 LINK NA NA A 406 O1B TPP A 410 1555 1555 2.45 LINK NA NA A 406 O2A TPP A 410 1555 1555 2.39 LINK NA NA A 406 O3A TPP A 410 1555 1555 3.03 LINK NA NA A 406 O HOH A 620 1555 1555 2.46 LINK NA NA A 406 O HOH B 605 1555 1555 2.56 LINK MG MG A 407 O1B TPP A 410 1555 1555 1.99 LINK MG MG A 407 O HOH A 632 1555 1555 2.21 LINK MG MG A 407 OD1 ASP B 43 1555 1555 2.05 LINK NA NA A 408 O HOH A 584 1555 1555 2.35 LINK NA NA A 408 O HOH B 567 1555 1555 2.25 LINK NA NA A 408 O HOH B 569 1555 1555 2.33 LINK NA NA A 408 O HOH B 631 1555 1555 2.57 LINK O2B TPP A 410 NA NA B 404 1555 1555 2.12 LINK O1A TPP A 410 NA NA B 405 1555 1555 2.15 LINK O3B TPP A 410 NA NA B 405 1555 1555 2.15 LINK MG MG A 411 OD1 ASP B 71 1555 1555 2.02 LINK MG MG A 411 OD1 ASP B 198 1555 1555 2.16 LINK MG MG A 411 O HOH B 611 1555 1555 2.20 LINK MG MG A 411 O HOH B 628 1555 1555 2.17 LINK O HOH A 507 NA NA B 405 1555 1555 2.29 LINK O HOH A 515 NA NA B 403 1555 1555 2.42 LINK O HOH A 556 NA NA B 402 1555 1555 2.48 LINK O HOH A 588 NA NA B 405 1555 1555 2.26 LINK O HOH A 632 NA NA B 403 1555 1555 2.29 LINK O ALA B 42 NA NA B 403 1555 1555 2.52 LINK OD1 ASP B 43 NA NA B 403 1555 1555 2.60 LINK OD2 ASP B 43 NA NA B 404 1555 1555 2.20 LINK OD2 ASP B 71 NA NA B 404 1555 1555 2.12 LINK OD1 ASP B 118 NA NA B 402 1555 1555 2.52 LINK OD2 ASP B 118 NA NA B 402 1555 1555 2.95 LINK OD1 ASP B 201 NA NA B 405 1555 1555 2.30 LINK O1A TPP B 401 NA NA B 402 1555 1555 2.33 LINK O3A TPP B 401 NA NA B 402 1555 1555 2.97 LINK O3B TPP B 401 NA NA B 402 1555 1555 2.51 LINK NA NA B 402 O HOH B 580 1555 1555 2.45 LINK NA NA B 403 O HOH B 578 1555 1555 2.32 LINK NA NA B 403 O HOH B 624 1555 1555 2.54 LINK NA NA B 404 O HOH B 542 1555 1555 2.26 LINK NA NA B 404 O HOH B 628 1555 1555 2.20 LINK NA NA B 405 O HOH B 519 1555 1555 2.39 CISPEP 1 SER A 15 HIS A 16 0 9.20 SITE 1 AC1 6 ASP A 43 ASP A 71 ADP A 409 HOH A 528 SITE 2 AC1 6 HOH A 639 TPP B 401 SITE 1 AC2 5 ASP A 201 HOH A 506 TPP B 401 HOH B 504 SITE 2 AC2 5 HOH B 531 SITE 1 AC3 6 ASP A 71 ASP A 198 ADP A 409 HOH A 537 SITE 2 AC3 6 HOH A 639 ASP B 26 SITE 1 AC4 7 ASP A 43 NA A 408 ADP A 409 ASP B 118 SITE 2 AC4 7 TPP B 401 NA B 402 HOH B 569 SITE 1 AC5 30 ILE A 7 PHE A 11 ILE A 23 GLY A 24 SITE 2 AC5 30 ASP A 25 ASP A 26 LEU A 84 GLY A 116 SITE 3 AC5 30 GLY A 117 ASP A 118 THR A 119 MG A 407 SITE 4 AC5 30 TPP A 410 MG A 411 HOH A 507 HOH A 515 SITE 5 AC5 30 HOH A 555 HOH A 562 HOH A 571 HOH A 632 SITE 6 AC5 30 ASP B 43 ASP B 71 ARG B 143 SER B 200 SITE 7 AC5 30 NA B 403 NA B 404 HOH B 513 HOH B 519 SITE 8 AC5 30 HOH B 611 HOH B 628 SITE 1 AC6 7 ASP A 118 THR A 120 MG A 407 TPP A 410 SITE 2 AC6 7 HOH A 620 ASP B 43 HOH B 605 SITE 1 AC7 7 ASP A 118 ADP A 405 NA A 406 TPP A 410 SITE 2 AC7 7 HOH A 632 ASP B 43 NA B 403 SITE 1 AC8 9 ALA A 42 ASP A 43 ASP A 71 MG A 404 SITE 2 AC8 9 ADP A 409 HOH A 584 HOH B 567 HOH B 569 SITE 3 AC8 9 HOH B 631 SITE 1 AC9 30 ASP A 43 ASP A 71 ARG A 143 SER A 200 SITE 2 AC9 30 NA A 401 MG A 403 MG A 404 NA A 408 SITE 3 AC9 30 HOH A 506 HOH A 568 HOH A 599 HOH A 602 SITE 4 AC9 30 HOH A 639 PHE B 4 ILE B 7 PHE B 11 SITE 5 AC9 30 ILE B 23 GLY B 24 ASP B 25 ASP B 26 SITE 6 AC9 30 LEU B 84 GLY B 116 GLY B 117 ASP B 118 SITE 7 AC9 30 THR B 119 TPP B 401 HOH B 504 HOH B 567 SITE 8 AC9 30 HOH B 569 HOH B 596 SITE 1 AD1 29 ASP A 118 ADP A 405 NA A 406 MG A 407 SITE 2 AD1 29 HOH A 507 HOH A 509 HOH A 544 HOH A 588 SITE 3 AD1 29 HOH A 620 ASP B 43 GLY B 48 ARG B 49 SITE 4 AD1 29 HIS B 50 PHE B 51 PRO B 52 LEU B 165 SITE 5 AD1 29 LEU B 176 SER B 200 ASP B 201 GLY B 246 SITE 6 AD1 29 ASP B 248 TYR B 250 TYR B 301 HIS B 303 SITE 7 AD1 29 NA B 404 NA B 405 HOH B 542 HOH B 543 SITE 8 AD1 29 HOH B 628 SITE 1 AD2 6 ASP A 26 ADP A 405 ASP B 71 ASP B 198 SITE 2 AD2 6 HOH B 611 HOH B 628 SITE 1 AD3 28 ASP A 43 GLY A 48 ARG A 49 HIS A 50 SITE 2 AD3 28 PHE A 51 PRO A 52 LEU A 165 LEU A 176 SITE 3 AD3 28 SER A 200 ASP A 201 GLY A 246 ASP A 248 SITE 4 AD3 28 TYR A 250 TYR A 301 HIS A 303 NA A 401 SITE 5 AD3 28 NA A 402 MG A 404 ADP A 409 HOH A 528 SITE 6 AD3 28 HOH A 639 ASP B 118 NA B 402 HOH B 504 SITE 7 AD3 28 HOH B 524 HOH B 528 HOH B 531 HOH B 580 SITE 1 AD4 7 ASP A 43 MG A 404 HOH A 556 ASP B 118 SITE 2 AD4 7 THR B 120 TPP B 401 HOH B 580 SITE 1 AD5 8 ADP A 405 MG A 407 HOH A 515 HOH A 632 SITE 2 AD5 8 ALA B 42 ASP B 43 HOH B 578 HOH B 624 SITE 1 AD6 6 ADP A 405 TPP A 410 ASP B 43 ASP B 71 SITE 2 AD6 6 HOH B 542 HOH B 628 SITE 1 AD7 5 TPP A 410 HOH A 507 HOH A 588 ASP B 201 SITE 2 AD7 5 HOH B 519 CRYST1 87.150 93.920 73.700 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013569 0.00000