HEADER TRANSPORT PROTEIN 19-AUG-15 5DA0 TITLE STRUCTURE OF THE THE SLC26 TRANSPORTER SLC26DG IN COMPLEX WITH A TITLE 2 NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULPHATE TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS (STRAIN DSM 11300); SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 GENE: DGEO_2773; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_COMMON: LLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE TRANSPORT PROTEIN, NANOBODY COMPLEX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.DUTZLER,E.R.GEERTSMA,Y.CHANG,F.R.SHAIK REVDAT 3 14-OCT-15 5DA0 1 JRNL REVDAT 2 23-SEP-15 5DA0 1 JRNL REVDAT 1 09-SEP-15 5DA0 0 JRNL AUTH E.R.GEERTSMA,Y.N.CHANG,F.R.SHAIK,Y.NELDNER,E.PARDON, JRNL AUTH 2 J.STEYAERT,R.DUTZLER JRNL TITL STRUCTURE OF A PROKARYOTIC FUMARATE TRANSPORTER REVEALS THE JRNL TITL 2 ARCHITECTURE OF THE SLC26 FAMILY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 803 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26367249 JRNL DOI 10.1038/NSMB.3091 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9461 - 6.0720 0.99 2768 139 0.2178 0.2720 REMARK 3 2 6.0720 - 4.8422 1.00 2742 149 0.2699 0.3298 REMARK 3 3 4.8422 - 4.2368 1.00 2723 144 0.2502 0.3022 REMARK 3 4 4.2368 - 3.8525 1.00 2768 109 0.2701 0.2968 REMARK 3 5 3.8525 - 3.5780 0.99 2697 148 0.3040 0.3155 REMARK 3 6 3.5780 - 3.3681 0.99 2718 120 0.3305 0.3608 REMARK 3 7 3.3681 - 3.2002 0.99 2681 164 0.3749 0.4713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4502 REMARK 3 ANGLE : 0.744 6113 REMARK 3 CHIRALITY : 0.026 746 REMARK 3 PLANARITY : 0.004 754 REMARK 3 DIHEDRAL : 12.861 1557 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5831 20.9199 65.5601 REMARK 3 T TENSOR REMARK 3 T11: 1.0398 T22: 0.9699 REMARK 3 T33: 0.9964 T12: -0.0331 REMARK 3 T13: -0.0172 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0326 L22: 0.6677 REMARK 3 L33: 0.7999 L12: -0.4467 REMARK 3 L13: 0.0384 L23: -0.8352 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: -0.1826 S13: 0.0422 REMARK 3 S21: 0.1594 S22: 0.1012 S23: -0.0797 REMARK 3 S31: 0.0218 S32: 0.4797 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1688 37.8176 63.9227 REMARK 3 T TENSOR REMARK 3 T11: 1.2029 T22: 0.9703 REMARK 3 T33: 1.0996 T12: -0.2475 REMARK 3 T13: 0.0956 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: -0.1985 L22: 0.9901 REMARK 3 L33: 0.6976 L12: 0.4887 REMARK 3 L13: 1.1164 L23: -0.8647 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.4088 S13: -0.0839 REMARK 3 S21: -0.0784 S22: 0.1109 S23: 0.0812 REMARK 3 S31: -0.4861 S32: 0.2352 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8087 24.4470 62.9745 REMARK 3 T TENSOR REMARK 3 T11: 1.0132 T22: 1.0110 REMARK 3 T33: 1.0343 T12: -0.0465 REMARK 3 T13: 0.0208 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.6046 L22: 0.5941 REMARK 3 L33: 3.4776 L12: 0.2529 REMARK 3 L13: -0.1402 L23: 0.2744 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: 0.3063 S13: -0.0807 REMARK 3 S21: 0.0244 S22: 0.0251 S23: -0.0666 REMARK 3 S31: -0.0860 S32: 0.1477 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3875 18.0669 43.6704 REMARK 3 T TENSOR REMARK 3 T11: 1.1872 T22: 1.5780 REMARK 3 T33: 1.2573 T12: -0.0936 REMARK 3 T13: -0.0422 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.6284 L22: 0.9862 REMARK 3 L33: 0.0823 L12: -0.0522 REMARK 3 L13: 0.3579 L23: 0.3636 REMARK 3 S TENSOR REMARK 3 S11: -0.3326 S12: 0.6194 S13: -0.3151 REMARK 3 S21: -0.1643 S22: 0.2337 S23: 0.0970 REMARK 3 S31: 0.2129 S32: 0.2922 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8884 28.4760 61.5456 REMARK 3 T TENSOR REMARK 3 T11: 1.6777 T22: 1.8434 REMARK 3 T33: 2.0201 T12: 0.1669 REMARK 3 T13: 0.0598 T23: -0.2265 REMARK 3 L TENSOR REMARK 3 L11: 0.1548 L22: 0.0732 REMARK 3 L33: -0.3574 L12: -0.1296 REMARK 3 L13: -0.1766 L23: -0.2098 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: -0.6374 S13: 0.1162 REMARK 3 S21: 0.6134 S22: 0.6873 S23: -0.6881 REMARK 3 S31: -0.7305 S32: -1.1012 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6123 28.5349 56.5889 REMARK 3 T TENSOR REMARK 3 T11: 1.3492 T22: 1.7192 REMARK 3 T33: 1.6303 T12: 0.2287 REMARK 3 T13: -0.0894 T23: -0.2371 REMARK 3 L TENSOR REMARK 3 L11: 0.1470 L22: 0.1523 REMARK 3 L33: -0.0255 L12: -0.0782 REMARK 3 L13: 0.1215 L23: 0.3404 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: -1.7622 S13: 0.9169 REMARK 3 S21: 0.7473 S22: 0.9533 S23: 0.6081 REMARK 3 S31: -0.4728 S32: -0.4612 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3522 22.1376 49.7368 REMARK 3 T TENSOR REMARK 3 T11: 1.6354 T22: 2.0615 REMARK 3 T33: 1.8061 T12: 0.0011 REMARK 3 T13: 0.2333 T23: 0.1405 REMARK 3 L TENSOR REMARK 3 L11: 0.1195 L22: 0.0416 REMARK 3 L33: -0.1276 L12: 0.0138 REMARK 3 L13: -0.0511 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.7786 S12: -0.9780 S13: -0.3230 REMARK 3 S21: 0.2117 S22: -0.1496 S23: -0.4216 REMARK 3 S31: -0.5254 S32: -0.5689 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9484 36.2494 48.4585 REMARK 3 T TENSOR REMARK 3 T11: 2.0041 T22: 2.4694 REMARK 3 T33: 1.8382 T12: 0.4665 REMARK 3 T13: -0.0902 T23: -0.3483 REMARK 3 L TENSOR REMARK 3 L11: -0.0406 L22: -0.0029 REMARK 3 L33: 0.0191 L12: 0.0034 REMARK 3 L13: -0.0363 L23: 0.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.2337 S12: 0.1303 S13: 0.3082 REMARK 3 S21: -0.1970 S22: 0.0599 S23: 0.4435 REMARK 3 S31: 0.1419 S32: -0.1268 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5257 24.7080 59.6944 REMARK 3 T TENSOR REMARK 3 T11: 1.5728 T22: 1.8210 REMARK 3 T33: 1.6461 T12: 0.0252 REMARK 3 T13: -0.0555 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 0.1643 L22: 0.1603 REMARK 3 L33: -0.0190 L12: -0.0745 REMARK 3 L13: -0.0301 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: -0.7748 S13: 0.7812 REMARK 3 S21: -0.0534 S22: -0.4165 S23: -0.0094 REMARK 3 S31: 0.9693 S32: 0.3476 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3738 31.7071 57.3173 REMARK 3 T TENSOR REMARK 3 T11: 1.9477 T22: 2.7670 REMARK 3 T33: 2.2111 T12: -0.0157 REMARK 3 T13: -0.0783 T23: -0.2764 REMARK 3 L TENSOR REMARK 3 L11: -0.0160 L22: -0.0205 REMARK 3 L33: -0.1148 L12: 0.2922 REMARK 3 L13: 0.0916 L23: -0.0223 REMARK 3 S TENSOR REMARK 3 S11: -0.7294 S12: -0.8133 S13: 0.6628 REMARK 3 S21: -0.0405 S22: 0.5448 S23: -0.4185 REMARK 3 S31: 0.1159 S32: 0.2241 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20209 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELX, SHARP, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M AMMONIUMFORMATE, 50 MM NA ACETATE REMARK 280 PH 4.5, 48% PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.82500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.82500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD2 LEU A 219 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 TYR A 13 REMARK 465 THR A 347 REMARK 465 LEU A 348 REMARK 465 THR A 349 REMARK 465 VAL A 350 REMARK 465 ALA A 485 REMARK 465 VAL A 486 REMARK 465 HIS A 487 REMARK 465 ASP A 488 REMARK 465 LYS A 489 REMARK 465 PRO A 490 REMARK 465 ASP A 491 REMARK 465 ALA A 492 REMARK 465 LEU A 493 REMARK 465 ASP A 494 REMARK 465 ARG A 495 REMARK 465 MET A 496 REMARK 465 GLY A 497 REMARK 465 GLY A 498 REMARK 465 HIS A 499 REMARK 465 SER A 500 REMARK 465 LEU A 501 REMARK 465 GLY A 502 REMARK 465 VAL A 503 REMARK 465 LEU A 504 REMARK 465 PRO A 505 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 GLN B 8 REMARK 465 ARG B 30 REMARK 465 THR B 31 REMARK 465 PHE B 32 REMARK 465 SER B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 455 OG SER B 108 2.03 REMARK 500 O ALA A 100 OG1 THR A 104 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG LEU A 219 CD2 LEU A 219 2657 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 219 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 70.93 47.94 REMARK 500 PHE A 18 30.40 -141.32 REMARK 500 ALA A 76 -109.63 -138.13 REMARK 500 LYS A 115 71.49 57.26 REMARK 500 LYS A 173 -136.54 -114.40 REMARK 500 ALA A 174 38.37 -83.97 REMARK 500 PRO A 215 84.88 -54.46 REMARK 500 THR A 220 -120.05 45.81 REMARK 500 THR A 253 -128.35 -125.17 REMARK 500 ARG A 297 12.52 -144.42 REMARK 500 TRP A 342 -159.63 -121.74 REMARK 500 GLN A 393 -61.22 -103.86 REMARK 500 LEU A 394 -4.57 64.33 REMARK 500 PRO A 432 97.21 -61.49 REMARK 500 PRO B 44 109.13 -57.42 REMARK 500 THR B 94 105.38 -57.48 REMARK 500 THR B 104 -10.09 71.69 REMARK 500 ILE B 106 38.53 35.51 REMARK 500 TYR B 112 -135.58 -139.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 602 DBREF 5DA0 A 1 499 UNP Q1J2S8 Q1J2S8_DEIGD 1 499 DBREF 5DA0 B 1 124 PDB 5DA0 5DA0 1 124 SEQADV 5DA0 SER A 500 UNP Q1J2S8 EXPRESSION TAG SEQADV 5DA0 LEU A 501 UNP Q1J2S8 EXPRESSION TAG SEQADV 5DA0 GLY A 502 UNP Q1J2S8 EXPRESSION TAG SEQADV 5DA0 VAL A 503 UNP Q1J2S8 EXPRESSION TAG SEQADV 5DA0 LEU A 504 UNP Q1J2S8 EXPRESSION TAG SEQADV 5DA0 PRO A 505 UNP Q1J2S8 EXPRESSION TAG SEQRES 1 A 505 MET THR VAL HIS SER PRO ARG PHE ASP LEU ARG GLN TYR SEQRES 2 A 505 GLN ARG GLU TRP PHE ALA ASN PRO ARG LYS ASP VAL LEU SEQRES 3 A 505 ALA GLY ILE VAL VAL ALA LEU ALA LEU ILE PRO GLU ALA SEQRES 4 A 505 ILE ALA PHE SER ILE ILE ALA GLY VAL ASP PRO GLN VAL SEQRES 5 A 505 GLY LEU TYR ALA SER PHE ILE ILE ALA LEU ILE THR ALA SEQRES 6 A 505 PHE LEU GLY GLY ARG PRO GLY MET ILE SER ALA ALA THR SEQRES 7 A 505 GLY ALA MET ALA LEU LEU MET THR GLY LEU VAL LYS ASP SEQRES 8 A 505 HIS GLY ILE GLN TYR LEU PHE ALA ALA THR VAL LEU THR SEQRES 9 A 505 GLY VAL LEU GLN VAL VAL PHE GLY TRP ALA LYS LEU ALA SEQRES 10 A 505 ARG TYR LEU LYS PHE VAL PRO ARG SER VAL MET VAL GLY SEQRES 11 A 505 PHE VAL ASN ALA LEU ALA ILE LEU ILE PHE MET ALA GLN SEQRES 12 A 505 LEU PRO GLN PHE VAL GLY ALA ASN TRP GLN MET TYR ALA SEQRES 13 A 505 MET VAL ALA ALA GLY LEU ALA ILE ILE TYR LEU LEU PRO SEQRES 14 A 505 LEU VAL PHE LYS ALA MET PRO SER ALA LEU VAL ALA ILE SEQRES 15 A 505 VAL VAL LEU THR VAL VAL ALA VAL VAL THR GLY ALA ASP SEQRES 16 A 505 VAL LYS THR VAL GLY ASP MET GLY THR LEU PRO THR ALA SEQRES 17 A 505 LEU PRO HIS PHE GLN PHE PRO GLN VAL PRO LEU THR PHE SEQRES 18 A 505 GLU THR LEU ALA ILE ILE PHE PRO VAL ALA LEU THR LEU SEQRES 19 A 505 SER LEU VAL GLY LEU LEU GLU SER LEU LEU THR ALA GLN SEQRES 20 A 505 LEU ILE ASP GLU ARG THR ASP THR THR SER ASP LYS ASN SEQRES 21 A 505 VAL GLU SER ARG GLY GLN GLY VAL ALA ASN ILE VAL THR SEQRES 22 A 505 GLY PHE PHE GLY GLY MET ALA GLY CYS ALA MET ILE GLY SEQRES 23 A 505 GLN SER MET ILE ASN VAL THR SER GLY GLY ARG GLY ARG SEQRES 24 A 505 LEU SER THR PHE VAL ALA GLY ALA PHE LEU MET VAL LEU SEQRES 25 A 505 ILE LEU ALA LEU GLN PRO LEU LEU VAL GLN ILE PRO MET SEQRES 26 A 505 ALA ALA LEU VAL ALA VAL MET MET VAL VAL ALA ILE SER SEQRES 27 A 505 THR PHE ASP TRP GLY SER LEU ARG THR LEU THR VAL PHE SEQRES 28 A 505 PRO LYS GLY GLU THR VAL VAL MET LEU ALA THR VAL ALA SEQRES 29 A 505 VAL THR VAL PHE THR HIS ASP LEU SER LEU GLY VAL LEU SEQRES 30 A 505 ILE GLY VAL VAL LEU SER ALA LEU PHE PHE ALA ARG LYS SEQRES 31 A 505 VAL SER GLN LEU SER GLN VAL THR PRO VAL ASP GLU VAL SEQRES 32 A 505 ASP GLY THR ARG THR TYR ARG VAL ARG GLY GLN LEU PHE SEQRES 33 A 505 PHE VAL SER THR HIS ASP PHE LEU HIS GLN PHE ASP PHE SEQRES 34 A 505 THR HIS PRO ALA ARG ARG VAL VAL ILE ASP LEU SER ASP SEQRES 35 A 505 ALA HIS PHE TRP ASP GLY SER ALA VAL GLY ALA LEU ASP SEQRES 36 A 505 LYS VAL MET LEU LYS PHE MET ARG GLN GLY THR SER VAL SEQRES 37 A 505 GLU LEU ARG GLY LEU ASN ALA ALA SER ALA THR LEU VAL SEQRES 38 A 505 GLU ARG LEU ALA VAL HIS ASP LYS PRO ASP ALA LEU ASP SEQRES 39 A 505 ARG MET GLY GLY HIS SER LEU GLY VAL LEU PRO SEQRES 1 B 124 GLY PRO SER GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SEQRES 2 B 124 LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 B 124 ALA SER GLY ARG THR PHE SER SER ASP VAL MET GLY TRP SEQRES 4 B 124 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 B 124 ALA VAL THR ARG SER GLY GLY LYS SER TYR ASN ALA ASP SEQRES 6 B 124 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 7 B 124 LYS ASN THR VAL SER LEU GLN MET ASN SER LEU LYS PRO SEQRES 8 B 124 GLU ASP THR ALA VAL TYR TYR CYS ALA ALA GLY ASP THR SEQRES 9 B 124 ALA ILE THR SER TRP TYR GLY TYR ASP TYR TRP GLY GLN SEQRES 10 B 124 GLY THR GLN VAL THR VAL SER HET DMU A 601 33 HET DMU A 602 33 HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETSYN DMU DECYLMALTOSIDE FORMUL 3 DMU 2(C22 H42 O11) HELIX 1 AA1 ASN A 20 ALA A 34 1 15 HELIX 2 AA2 ALA A 34 ALA A 46 1 13 HELIX 3 AA3 ASP A 49 GLY A 68 1 20 HELIX 4 AA4 THR A 78 LYS A 90 1 13 HELIX 5 AA5 GLN A 95 ALA A 114 1 20 HELIX 6 AA6 LEU A 116 VAL A 123 5 8 HELIX 7 AA7 PRO A 124 GLN A 143 1 20 HELIX 8 AA8 LEU A 144 PHE A 147 5 4 HELIX 9 AA9 ASN A 151 LEU A 168 1 18 HELIX 10 AB1 PRO A 176 GLY A 193 1 18 HELIX 11 AB2 THR A 198 GLY A 203 1 6 HELIX 12 AB3 LEU A 219 THR A 253 1 35 HELIX 13 AB4 ASP A 258 PHE A 275 1 18 HELIX 14 AB5 MET A 284 SER A 294 1 11 HELIX 15 AB6 GLY A 298 LEU A 316 1 19 HELIX 16 AB7 LEU A 316 VAL A 321 1 6 HELIX 17 AB8 PRO A 324 ASP A 341 1 18 HELIX 18 AB9 PRO A 352 HIS A 370 1 19 HELIX 19 AC1 ASP A 371 SER A 392 1 22 HELIX 20 AC2 SER A 419 GLN A 426 1 8 HELIX 21 AC3 ASP A 447 GLY A 465 1 19 HELIX 22 AC4 ALA A 475 THR A 479 5 5 HELIX 23 AC5 LEU A 480 LEU A 484 5 5 SHEET 1 AA110 SER A 395 ASP A 401 0 SHEET 2 AA110 ARG A 407 LEU A 415 -1 O THR A 408 N VAL A 400 SHEET 3 AA110 ARG A 435 PHE A 445 1 O HIS A 444 N LEU A 415 SHEET 4 AA110 SER A 467 ARG A 471 1 O ARG A 471 N LEU A 440 SHEET 5 AA110 LYS B 60 ASN B 63 1 O LYS B 60 N VAL A 468 SHEET 6 AA110 ARG B 48 THR B 55 -1 N ALA B 53 O SER B 61 SHEET 7 AA110 VAL B 36 GLN B 42 -1 N ARG B 41 O GLU B 49 SHEET 8 AA110 ALA B 95 ALA B 100 -1 O VAL B 96 N GLN B 42 SHEET 9 AA110 TRP B 115 VAL B 123 -1 O THR B 119 N TYR B 97 SHEET 10 AA110 GLY B 13 VAL B 15 1 N VAL B 15 O THR B 122 SHEET 1 AA2 3 LEU B 21 ALA B 26 0 SHEET 2 AA2 3 THR B 81 MET B 86 -1 O VAL B 82 N CYS B 25 SHEET 3 AA2 3 THR B 72 ARG B 75 -1 N THR B 72 O GLN B 85 SSBOND 1 CYS B 25 CYS B 99 1555 1555 2.03 SITE 1 AC1 7 PHE A 131 LEU A 240 GLU A 241 LEU A 244 SITE 2 AC1 7 VAL A 335 SER A 338 THR A 339 SITE 1 AC2 7 TRP A 17 ARG A 70 PHE A 122 ASP A 254 SITE 2 AC2 7 THR A 255 THR A 256 PHE A 387 CRYST1 127.650 117.280 84.360 90.00 100.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007834 0.000000 0.001395 0.00000 SCALE2 0.000000 0.008527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012040 0.00000