HEADER TRANSFERASE 20-AUG-15 5DAI TITLE PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG 1 BOUND TO FEN-1 PEPTIDE CAVEAT 5DAI GLU A 171 HAS WRONG CHIRALITY AT ATOM CA THR A 172 HAS WRONG CAVEAT 2 5DAI CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE SLIDING CLAMP 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG 1,PCNA 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-TERMINUS OF FEN-1 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 6 GENE: PCN1, TK0535; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 12 ORGANISM_TAXID: 69014 KEYWDS COMPLEX, PIP BOX BINDER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.LADNER,A.S.ALTIERI,Z.KELMAN REVDAT 4 27-SEP-23 5DAI 1 JRNL REMARK REVDAT 3 10-AUG-16 5DAI 1 JRNL REVDAT 2 18-MAY-16 5DAI 1 JRNL REVDAT 1 11-MAY-16 5DAI 0 JRNL AUTH A.S.ALTIERI,J.E.LADNER,Z.LI,H.ROBINSON,Z.F.SALLMAN, JRNL AUTH 2 J.P.MARINO,Z.KELMAN JRNL TITL A SMALL PROTEIN INHIBITS PROLIFERATING CELL NUCLEAR ANTIGEN JRNL TITL 2 BY BREAKING THE DNA CLAMP. JRNL REF NUCLEIC ACIDS RES. V. 44 6232 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27141962 JRNL DOI 10.1093/NAR/GKW351 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 20133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7647 - 3.8236 0.94 2630 122 0.1499 0.1575 REMARK 3 2 3.8236 - 3.0360 0.97 2701 149 0.1659 0.1928 REMARK 3 3 3.0360 - 2.6525 0.98 2738 162 0.2144 0.3217 REMARK 3 4 2.6525 - 2.4101 0.99 2733 149 0.2281 0.3146 REMARK 3 5 2.4101 - 2.2375 0.99 2783 143 0.2343 0.3167 REMARK 3 6 2.2375 - 2.1056 1.00 2753 148 0.2347 0.3220 REMARK 3 7 2.1056 - 2.0002 1.00 2770 152 0.2735 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2198 REMARK 3 ANGLE : 1.136 2969 REMARK 3 CHIRALITY : 0.046 329 REMARK 3 PLANARITY : 0.004 379 REMARK 3 DIHEDRAL : 14.834 842 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.310 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 2.8 M AMMONIUM SULFATE, REMARK 280 100 MM CITRIC ACID BUFFER PH 5.3, AND 10% PEG 4000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.89883 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.74667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.03500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.89883 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.74667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.03500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.89883 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.74667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.79766 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 23.49333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 87.79766 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 23.49333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 87.79766 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 23.49333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -419.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 GLY B 339 REMARK 465 ARG B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 171 CA GLU A 171 CB -0.235 REMARK 500 THR A 172 CA THR A 172 CB -0.381 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 171 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 GLU A 171 N - CA - CB ANGL. DEV. = 18.9 DEGREES REMARK 500 THR A 172 CB - CA - C ANGL. DEV. = 23.1 DEGREES REMARK 500 THR A 172 N - CA - CB ANGL. DEV. = 27.8 DEGREES REMARK 500 THR A 172 N - CA - C ANGL. DEV. = -23.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 51.41 -92.28 REMARK 500 THR A 172 -85.19 93.46 REMARK 500 ASP A 235 -55.86 73.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LX1 RELATED DB: PDB REMARK 900 THE PCNA WITH NOTHING BOUND. REMARK 900 RELATED ID: 5DA7 RELATED DB: PDB REMARK 900 THE PCNA WITH BINDING INHIBITOR PROTEIN. DBREF 5DAI A 1 249 UNP Q5JF32 PCNA1_THEKO 1 249 DBREF 5DAI B 330 340 PDB 5DAI 5DAI 330 340 SEQADV 5DAI HIS A 250 UNP Q5JF32 EXPRESSION TAG SEQADV 5DAI HIS A 251 UNP Q5JF32 EXPRESSION TAG SEQADV 5DAI HIS A 252 UNP Q5JF32 EXPRESSION TAG SEQADV 5DAI HIS A 253 UNP Q5JF32 EXPRESSION TAG SEQADV 5DAI HIS A 254 UNP Q5JF32 EXPRESSION TAG SEQADV 5DAI HIS A 255 UNP Q5JF32 EXPRESSION TAG SEQRES 1 A 255 MET PRO PHE GLU VAL VAL PHE ASP GLY ALA LYS GLU PHE SEQRES 2 A 255 ALA ASP LEU ILE ALA THR ALA SER ASN LEU ILE ASP GLU SEQRES 3 A 255 ALA ALA PHE LYS PHE THR GLU GLU GLY ILE SER MET ARG SEQRES 4 A 255 ALA MET ASP PRO SER ARG VAL VAL LEU ILE ASP LEU ASN SEQRES 5 A 255 LEU PRO GLU SER ILE PHE SER LYS TYR GLU VAL GLU GLU SEQRES 6 A 255 PRO GLU THR ILE GLY ILE ASN MET ASP GLN PHE LYS LYS SEQRES 7 A 255 ILE LEU LYS ARG GLY LYS ALA LYS ASP THR LEU ILE LEU SEQRES 8 A 255 ARG LYS GLY ASP GLU ASN PHE LEU GLU ILE THR PHE GLU SEQRES 9 A 255 GLY THR ALA LYS ARG THR PHE ARG LEU PRO LEU ILE ASP SEQRES 10 A 255 VAL GLU GLU LEU GLU LEU GLU LEU PRO GLU LEU PRO PHE SEQRES 11 A 255 THR ALA LYS VAL VAL LEU LEU GLY GLU VAL LEU LYS GLU SEQRES 12 A 255 GLY ILE LYS ASP ALA SER LEU VAL SER ASP ALA ILE LYS SEQRES 13 A 255 PHE ILE ALA LYS GLU ASN GLU PHE THR MET LYS ALA GLU SEQRES 14 A 255 GLY GLU THR ASN GLU VAL GLU ILE ARG LEU THR LEU GLU SEQRES 15 A 255 ASP GLU GLY LEU LEU ASP LEU GLU VAL GLU GLU GLU THR SEQRES 16 A 255 LYS SER ALA TYR GLY ILE ARG TYR LEU SER ASP MET VAL SEQRES 17 A 255 LYS GLY ILE GLY LYS ALA ASP GLU VAL ILE LEU ARG PHE SEQRES 18 A 255 GLY ASN GLU MET PRO LEU GLN MET GLU TYR MET ILE ARG SEQRES 19 A 255 ASP GLU GLY ARG LEU THR PHE LEU LEU ALA PRO ARG VAL SEQRES 20 A 255 GLU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 11 LYS GLN ARG THR LEU GLU SER TRP PHE GLY ARG HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 11(O4 S 2-) FORMUL 14 HOH *98(H2 O) HELIX 1 AA1 GLY A 9 ASN A 22 1 14 HELIX 2 AA2 SER A 56 PHE A 58 5 3 HELIX 3 AA3 MET A 73 LYS A 81 1 9 HELIX 4 AA4 GLY A 138 LEU A 150 1 13 HELIX 5 AA5 ILE A 201 LYS A 209 1 9 HELIX 6 AA6 LEU B 334 PHE B 338 5 5 SHEET 1 AA1 5 LYS A 60 GLU A 62 0 SHEET 2 AA1 5 PHE A 3 ASP A 8 -1 N VAL A 6 O LYS A 60 SHEET 3 AA1 5 THR A 88 LYS A 93 -1 O LEU A 89 N PHE A 7 SHEET 4 AA1 5 PHE A 98 GLU A 104 -1 O GLU A 100 N ARG A 92 SHEET 5 AA1 5 LYS A 108 PRO A 114 -1 O PHE A 111 N ILE A 101 SHEET 1 AA2 9 GLU A 67 ASN A 72 0 SHEET 2 AA2 9 GLU A 26 PHE A 31 -1 N PHE A 31 O GLU A 67 SHEET 3 AA2 9 GLY A 35 MET A 41 -1 O SER A 37 N LYS A 30 SHEET 4 AA2 9 VAL A 47 PRO A 54 -1 O LEU A 51 N MET A 38 SHEET 5 AA2 9 GLY A 237 LEU A 243 -1 O THR A 240 N ASP A 50 SHEET 6 AA2 9 LEU A 227 ILE A 233 -1 N MET A 229 O PHE A 241 SHEET 7 AA2 9 GLU A 216 PHE A 221 -1 N ARG A 220 O GLN A 228 SHEET 8 AA2 9 ALA A 132 LEU A 137 -1 N VAL A 134 O LEU A 219 SHEET 9 AA2 9 LEU A 186 VAL A 191 -1 O ASP A 188 N VAL A 135 SHEET 1 AA3 4 GLU A 174 THR A 180 0 SHEET 2 AA3 4 GLU A 163 GLU A 169 -1 N MET A 166 O ILE A 177 SHEET 3 AA3 4 ALA A 154 LYS A 160 -1 N ILE A 158 O THR A 165 SHEET 4 AA3 4 THR A 195 GLY A 200 -1 O SER A 197 N PHE A 157 SITE 1 AC1 2 GLU A 193 GLU A 194 SITE 1 AC2 3 LYS A 11 LYS A 84 ALA A 85 SITE 1 AC3 4 GLY A 212 LYS A 213 HOH A 404 HOH A 443 SITE 1 AC4 4 ASN A 22 LYS A 77 LYS A 81 HOH A 434 SITE 1 AC5 6 GLU A 55 SER A 59 LYS A 60 TYR A 61 SITE 2 AC5 6 HOH A 410 HOH A 458 SITE 1 AC6 4 LYS A 156 ILE A 158 LYS A 167 LYS A 196 SITE 1 AC7 3 GLU A 67 THR A 68 HOH A 403 SITE 1 AC8 6 THR A 68 ILE A 69 GLY A 70 ILE A 116 SITE 2 AC8 6 ASP A 117 VAL A 118 SITE 1 AC9 2 LYS A 142 LYS A 209 SITE 1 AD1 3 PHE A 130 GLU A 190 GLU A 192 SITE 1 AD2 4 LYS B 330 ARG B 332 THR B 333 HOH B 502 CRYST1 152.070 152.070 35.240 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006576 0.003797 0.000000 0.00000 SCALE2 0.000000 0.007593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028377 0.00000