HEADER PROTEIN BINDING 21-AUG-15 5DBM TITLE CRYSTAL STRUCTURE OF THE CBP BROMODOMAIN IN COMPLEX WITH CPI703 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BROMODOMAIN (UNP RESIDUES 1082-1197); COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CREBBP, CBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROMODOMAIN, INHIBITOR, EPIGENETICS, CHROMATIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.W.SETSER,F.POY,S.F.BELLON REVDAT 3 27-SEP-23 5DBM 1 JRNL REMARK REVDAT 2 29-JUN-16 5DBM 1 JRNL REVDAT 1 20-APR-16 5DBM 0 JRNL AUTH S.GHOSH,A.TAYLOR,M.CHIN,H.R.HUANG,A.R.CONERY,J.A.MERTZ, JRNL AUTH 2 A.SALMERON,P.J.DAKLE,D.MELE,A.COTE,H.JAYARAM,J.W.SETSER, JRNL AUTH 3 F.POY,G.HATZIVASSILIOU,D.DEALMEIDA-NAGATA,P.SANDY,C.HATTON, JRNL AUTH 4 F.A.ROMERO,E.CHIANG,T.REIMER,T.CRAWFORD,E.PARDO,V.G.WATSON, JRNL AUTH 5 V.TSUI,A.G.COCHRAN,L.ZAWADZKE,J.C.HARMANGE,J.E.AUDIA, JRNL AUTH 6 B.M.BRYANT,R.T.CUMMINGS,S.R.MAGNUSON,J.L.GROGAN,S.F.BELLON, JRNL AUTH 7 B.K.ALBRECHT,R.J.SIMS,J.M.LORA JRNL TITL REGULATORY T CELL MODULATION BY CBP/EP300 BROMODOMAIN JRNL TITL 2 INHIBITION. JRNL REF J.BIOL.CHEM. V. 291 13014 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27056325 JRNL DOI 10.1074/JBC.M115.708560 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3066 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2900 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4174 ; 1.987 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6689 ; 0.963 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.661 ;24.610 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;14.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3407 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 705 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1382 ; 1.099 ; 1.109 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1381 ; 1.082 ; 1.106 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1724 ; 1.688 ; 1.646 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1083 A 1196 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1982 66.5493 45.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0153 REMARK 3 T33: 0.0724 T12: 0.0146 REMARK 3 T13: -0.0054 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.5965 L22: 0.7195 REMARK 3 L33: 0.8827 L12: -0.2206 REMARK 3 L13: -0.2136 L23: -0.1489 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.1252 S13: 0.0542 REMARK 3 S21: -0.0247 S22: -0.0483 S23: -0.0077 REMARK 3 S31: 0.0135 S32: 0.0126 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1084 B 1196 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8167 59.8990 9.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.1063 REMARK 3 T33: 0.0368 T12: 0.0285 REMARK 3 T13: -0.0158 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.4492 L22: 1.8259 REMARK 3 L33: 1.6278 L12: -0.7091 REMARK 3 L13: 0.9663 L23: -0.3819 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.1624 S13: -0.1962 REMARK 3 S21: 0.2190 S22: 0.1926 S23: 0.0219 REMARK 3 S31: -0.0984 S32: 0.0537 S33: -0.0776 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1080 C 1197 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2641 60.9910 30.0872 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0774 REMARK 3 T33: 0.0660 T12: 0.0479 REMARK 3 T13: -0.0086 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.8597 L22: 0.9513 REMARK 3 L33: 1.0468 L12: -1.0056 REMARK 3 L13: 0.4971 L23: -0.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.1646 S12: 0.4073 S13: 0.1808 REMARK 3 S21: -0.1266 S22: -0.1876 S23: -0.0581 REMARK 3 S31: 0.0154 S32: 0.0951 S33: 0.0230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5DBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE:NAOH PH 9.0, 20% (W/V) REMARK 280 PEG 6000 (CPI703), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.29400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.01700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.29400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.01700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1080 REMARK 465 SER A 1081 REMARK 465 LYS A 1082 REMARK 465 GLY A 1197 REMARK 465 GLY B 1080 REMARK 465 SER B 1081 REMARK 465 LYS B 1082 REMARK 465 LYS B 1083 REMARK 465 GLY B 1197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1414 O HOH A 1461 2.14 REMARK 500 O HOH C 1374 O HOH C 1402 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C1188 CD GLU C1188 OE1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1091 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A1116 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS A1139 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A1143 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A1190 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B1173 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C1140 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C1140 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58N A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58N B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 58N C 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YK0 RELATED DB: PDB DBREF 5DBM A 1082 1197 UNP Q92793 CBP_HUMAN 1082 1197 DBREF 5DBM B 1082 1197 UNP Q92793 CBP_HUMAN 1082 1197 DBREF 5DBM C 1082 1197 UNP Q92793 CBP_HUMAN 1082 1197 SEQADV 5DBM GLY A 1080 UNP Q92793 EXPRESSION TAG SEQADV 5DBM SER A 1081 UNP Q92793 EXPRESSION TAG SEQADV 5DBM GLY B 1080 UNP Q92793 EXPRESSION TAG SEQADV 5DBM SER B 1081 UNP Q92793 EXPRESSION TAG SEQADV 5DBM GLY C 1080 UNP Q92793 EXPRESSION TAG SEQADV 5DBM SER C 1081 UNP Q92793 EXPRESSION TAG SEQRES 1 A 118 GLY SER LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG GLN SEQRES 2 A 118 ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP SEQRES 3 A 118 PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN SEQRES 4 A 118 LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS ASN SEQRES 5 A 118 PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR SEQRES 6 A 118 GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP VAL SEQRES 7 A 118 TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS SEQRES 8 A 118 THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA GLU SEQRES 9 A 118 VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU SEQRES 10 A 118 GLY SEQRES 1 B 118 GLY SER LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG GLN SEQRES 2 B 118 ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP SEQRES 3 B 118 PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN SEQRES 4 B 118 LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS ASN SEQRES 5 B 118 PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR SEQRES 6 B 118 GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP VAL SEQRES 7 B 118 TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS SEQRES 8 B 118 THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA GLU SEQRES 9 B 118 VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU SEQRES 10 B 118 GLY SEQRES 1 C 118 GLY SER LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG GLN SEQRES 2 C 118 ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP SEQRES 3 C 118 PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN SEQRES 4 C 118 LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS ASN SEQRES 5 C 118 PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR SEQRES 6 C 118 GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP VAL SEQRES 7 C 118 TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS SEQRES 8 C 118 THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA GLU SEQRES 9 C 118 VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU SEQRES 10 C 118 GLY HET 58N A1201 22 HET 58N B1201 22 HET 58N C1201 22 HETNAM 58N (4R)-6-(1-TERT-BUTYL-1H-PYRAZOL-4-YL)-4-METHYL-1,3,4,5- HETNAM 2 58N TETRAHYDRO-2H-1,5-BENZODIAZEPIN-2-ONE FORMUL 4 58N 3(C17 H22 N4 O) FORMUL 7 HOH *355(H2 O) HELIX 1 AA1 LYS A 1086 ARG A 1103 1 18 HELIX 2 AA2 SER A 1108 ARG A 1112 5 5 HELIX 3 AA3 ASP A 1116 GLY A 1121 1 6 HELIX 4 AA4 ASP A 1124 VAL A 1129 1 6 HELIX 5 AA5 ASP A 1134 THR A 1144 1 11 HELIX 6 AA6 GLU A 1149 ASN A 1168 1 20 HELIX 7 AA7 SER A 1172 LEU A 1196 1 25 HELIX 8 AA8 LYS B 1086 GLN B 1104 1 19 HELIX 9 AA9 SER B 1108 ARG B 1112 5 5 HELIX 10 AB1 ASP B 1124 VAL B 1129 1 6 HELIX 11 AB2 ASP B 1134 THR B 1144 1 11 HELIX 12 AB3 GLU B 1149 ASN B 1168 1 20 HELIX 13 AB4 SER B 1172 LEU B 1196 1 25 HELIX 14 AB5 LYS C 1086 ARG C 1103 1 18 HELIX 15 AB6 SER C 1108 ARG C 1112 5 5 HELIX 16 AB7 ASP C 1124 VAL C 1129 1 6 HELIX 17 AB8 ASP C 1134 THR C 1144 1 11 HELIX 18 AB9 GLU C 1149 ASN C 1168 1 20 HELIX 19 AC1 SER C 1172 GLY C 1197 1 26 CISPEP 1 ASP A 1105 PRO A 1106 0 9.93 CISPEP 2 ASP B 1105 PRO B 1106 0 9.62 CISPEP 3 ASP C 1105 PRO C 1106 0 18.14 SITE 1 AC1 7 LEU A1109 PRO A1110 VAL A1115 LEU A1120 SITE 2 AC1 7 ASN A1168 VAL A1174 HOH A1331 SITE 1 AC2 7 PRO B1110 VAL B1115 LEU B1120 TYR B1125 SITE 2 AC2 7 ASN B1168 HOH B1318 HOH B1325 SITE 1 AC3 7 GLN A1148 LEU C1109 PRO C1110 VAL C1115 SITE 2 AC3 7 LEU C1120 ASN C1168 HOH C1347 CRYST1 110.588 34.034 117.727 90.00 103.93 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009043 0.000000 0.002243 0.00000 SCALE2 0.000000 0.029382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008752 0.00000