HEADER METAL BINDING PROTEIN/TRANSPORT PROTEIN 21-AUG-15 5DBR TITLE CA2+ CAM WITH HUMAN CARDIAC NA+ CHANNEL (NAV1.5) INACTIVATION GATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SODIUM CHANNEL PROTEIN TYPE 5 SUBUNIT ALPHA; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: UNP RESIDUES 1483-1529; COMPND 10 SYNONYM: HH1,SODIUM CHANNEL PROTEIN CARDIAC MUSCLE SUBUNIT ALPHA, COMPND 11 SODIUM CHANNEL PROTEIN TYPE V SUBUNIT ALPHA,VOLTAGE-GATED SODIUM COMPND 12 CHANNEL SUBUNIT ALPHA NAV1.5; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 6 CAM3, CAMC, CAMIII; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: SCN5A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALMODULIN, NAV1.5, INACTIVATION GATE, METAL BINDING PROTEIN- KEYWDS 2 TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.N.JOHNSON,M.K.THOMPSON,W.J.CHAZIN REVDAT 5 27-SEP-23 5DBR 1 LINK REVDAT 4 04-DEC-19 5DBR 1 REMARK REVDAT 3 04-OCT-17 5DBR 1 REMARK REVDAT 2 27-SEP-17 5DBR 1 REMARK REVDAT 1 22-FEB-17 5DBR 0 JRNL AUTH C.N.JOHNSON,M.K.THOMPSON,M.VOEHLER,W.J.CHAZIN JRNL TITL ENHANCED UNDERSTANDING OF CA2+ MODULATION OF THE HUMAN JRNL TITL 2 CARDIAC SODIUM CHANNEL: TIGHT BINDING OF CALMODULIN TO THE JRNL TITL 3 INACTIVATION GATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 714 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : -3.95000 REMARK 3 B12 (A**2) : 0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1210 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1077 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1635 ; 1.913 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2475 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 157 ; 6.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;27.785 ;26.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;17.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;29.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1411 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 255 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 634 ; 3.350 ; 4.013 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 633 ; 3.338 ; 4.008 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 789 ; 4.434 ; 5.997 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.09050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.56 REMARK 200 R MERGE FOR SHELL (I) : 0.44550 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4DJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE PH 4.0, 20% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.42533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.21267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.21267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.42533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 1479 REMARK 465 PRO C 1480 REMARK 465 GLY C 1481 REMARK 465 SER C 1482 REMARK 465 GLN C 1483 REMARK 465 ASP C 1484 REMARK 465 ILE C 1485 REMARK 465 PHE C 1486 REMARK 465 MET C 1487 REMARK 465 THR C 1488 REMARK 465 GLU C 1489 REMARK 465 GLU C 1490 REMARK 465 GLN C 1491 REMARK 465 LYS C 1492 REMARK 465 LYS C 1493 REMARK 465 TYR C 1494 REMARK 465 TYR C 1495 REMARK 465 ASN C 1496 REMARK 465 ALA C 1497 REMARK 465 MET C 1498 REMARK 465 LYS C 1499 REMARK 465 LYS C 1500 REMARK 465 LEU C 1501 REMARK 465 GLY C 1502 REMARK 465 SER C 1503 REMARK 465 LYS C 1504 REMARK 465 LYS C 1505 REMARK 465 PRO C 1506 REMARK 465 GLN C 1507 REMARK 465 LYS C 1508 REMARK 465 PRO C 1509 REMARK 465 ILE C 1510 REMARK 465 PRO C 1511 REMARK 465 ARG C 1512 REMARK 465 PRO C 1513 REMARK 465 GLN C 1528 REMARK 465 ALA C 1529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ARG A 74 CD NE CZ NH1 NH2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS C1527 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -54.37 -25.62 REMARK 500 GLN A 41 -56.04 68.75 REMARK 500 ASN A 42 46.85 34.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 84.2 REMARK 620 3 ASP A 24 OD1 91.3 67.2 REMARK 620 4 THR A 26 O 75.7 147.1 87.3 REMARK 620 5 GLU A 31 OE1 99.0 133.7 157.3 75.9 REMARK 620 6 GLU A 31 OE2 106.6 80.6 141.3 129.9 54.1 REMARK 620 7 HOH A 308 O 175.8 98.1 86.3 100.7 82.1 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 76.7 REMARK 620 3 ASN A 60 OD1 78.9 74.4 REMARK 620 4 THR A 62 O 82.4 144.6 73.7 REMARK 620 5 GLU A 67 OE1 106.2 133.0 152.5 80.1 REMARK 620 6 GLU A 67 OE2 92.1 81.2 155.4 128.2 52.1 REMARK 620 7 HOH A 301 O 162.2 86.0 100.7 114.7 82.5 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 80.0 REMARK 620 3 ASN A 97 OD1 89.6 73.7 REMARK 620 4 TYR A 99 O 85.1 149.7 80.0 REMARK 620 5 GLU A 104 OE1 97.3 125.9 160.1 81.9 REMARK 620 6 GLU A 104 OE2 95.4 73.3 145.2 134.7 53.0 REMARK 620 7 HOH A 310 O 171.2 92.2 92.2 103.7 83.8 78.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD1 80.8 REMARK 620 3 ASP A 133 OD1 89.9 76.8 REMARK 620 4 GLN A 135 O 85.7 150.7 77.2 REMARK 620 5 GLU A 140 OE1 112.6 131.3 144.9 78.0 REMARK 620 6 GLU A 140 OE2 87.8 83.5 160.3 122.1 52.3 REMARK 620 7 HOH A 302 O 162.1 88.8 73.5 96.8 85.2 105.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 DBREF 5DBR A 4 148 UNP P62158 CALM_HUMAN 5 149 DBREF 5DBR C 1483 1529 UNP Q14524 SCN5A_HUMAN 1483 1529 SEQADV 5DBR GLY C 1479 UNP Q14524 EXPRESSION TAG SEQADV 5DBR PRO C 1480 UNP Q14524 EXPRESSION TAG SEQADV 5DBR GLY C 1481 UNP Q14524 EXPRESSION TAG SEQADV 5DBR SER C 1482 UNP Q14524 EXPRESSION TAG SEQRES 1 A 145 LEU THR GLU GLU GLN ILE ALA GLU PHE LYS GLU ALA PHE SEQRES 2 A 145 SER LEU PHE ASP LYS ASP GLY ASP GLY THR ILE THR THR SEQRES 3 A 145 LYS GLU LEU GLY THR VAL MET ARG SER LEU GLY GLN ASN SEQRES 4 A 145 PRO THR GLU ALA GLU LEU GLN ASP MET ILE ASN GLU VAL SEQRES 5 A 145 ASP ALA ASP GLY ASN GLY THR ILE ASP PHE PRO GLU PHE SEQRES 6 A 145 LEU THR MET MET ALA ARG LYS MET LYS ASP THR ASP SER SEQRES 7 A 145 GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL PHE ASP LYS SEQRES 8 A 145 ASP GLY ASN GLY TYR ILE SER ALA ALA GLU LEU ARG HIS SEQRES 9 A 145 VAL MET THR ASN LEU GLY GLU LYS LEU THR ASP GLU GLU SEQRES 10 A 145 VAL ASP GLU MET ILE ARG GLU ALA ASP ILE ASP GLY ASP SEQRES 11 A 145 GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN MET MET THR SEQRES 12 A 145 ALA LYS SEQRES 1 C 51 GLY PRO GLY SER GLN ASP ILE PHE MET THR GLU GLU GLN SEQRES 2 C 51 LYS LYS TYR TYR ASN ALA MET LYS LYS LEU GLY SER LYS SEQRES 3 C 51 LYS PRO GLN LYS PRO ILE PRO ARG PRO LEU ASN LYS TYR SEQRES 4 C 51 GLN GLY PHE ILE PHE ASP ILE VAL THR LYS GLN ALA HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 THR A 28 LEU A 39 1 12 HELIX 3 AA3 THR A 44 ASP A 56 1 13 HELIX 4 AA4 PHE A 65 ASP A 93 1 29 HELIX 5 AA5 SER A 101 LEU A 112 1 12 HELIX 6 AA6 THR A 117 ASP A 129 1 13 HELIX 7 AA7 ASN A 137 ALA A 147 1 11 HELIX 8 AA8 ASN C 1515 LYS C 1527 1 13 SHEET 1 AA1 2 THR A 26 ILE A 27 0 SHEET 2 AA1 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 LINK OD1 ASP A 20 CA CA A 201 1555 1555 2.25 LINK OD1 ASP A 22 CA CA A 201 1555 1555 2.54 LINK OD1 ASP A 24 CA CA A 201 1555 1555 2.26 LINK O THR A 26 CA CA A 201 1555 1555 2.31 LINK OE1 GLU A 31 CA CA A 201 1555 1555 2.49 LINK OE2 GLU A 31 CA CA A 201 1555 1555 2.24 LINK OD1 ASP A 56 CA CA A 203 1555 1555 2.14 LINK OD1 ASP A 58 CA CA A 203 1555 1555 2.63 LINK OD1 ASN A 60 CA CA A 203 1555 1555 2.57 LINK O THR A 62 CA CA A 203 1555 1555 2.44 LINK OE1 GLU A 67 CA CA A 203 1555 1555 2.51 LINK OE2 GLU A 67 CA CA A 203 1555 1555 2.50 LINK OD1 ASP A 93 CA CA A 202 1555 1555 2.40 LINK OD1 ASP A 95 CA CA A 202 1555 1555 2.45 LINK OD1 ASN A 97 CA CA A 202 1555 1555 2.10 LINK O TYR A 99 CA CA A 202 1555 1555 2.23 LINK OE1 GLU A 104 CA CA A 202 1555 1555 2.47 LINK OE2 GLU A 104 CA CA A 202 1555 1555 2.43 LINK OD1 ASP A 129 CA CA A 204 1555 1555 2.28 LINK OD1 ASP A 131 CA CA A 204 1555 1555 2.54 LINK OD1 ASP A 133 CA CA A 204 1555 1555 2.35 LINK O GLN A 135 CA CA A 204 1555 1555 2.24 LINK OE1 GLU A 140 CA CA A 204 1555 1555 2.44 LINK OE2 GLU A 140 CA CA A 204 1555 1555 2.46 LINK CA CA A 201 O HOH A 308 1555 6554 2.41 LINK CA CA A 202 O HOH A 310 1555 1555 2.44 LINK CA CA A 203 O HOH A 301 1555 1555 2.38 LINK CA CA A 204 O HOH A 302 1555 1555 2.51 SITE 1 AC1 6 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 6 GLU A 31 HOH A 308 SITE 1 AC2 6 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC2 6 GLU A 104 HOH A 310 SITE 1 AC3 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC3 6 GLU A 67 HOH A 301 SITE 1 AC4 6 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC4 6 GLU A 140 HOH A 302 CRYST1 58.086 58.086 102.638 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017216 0.009940 0.000000 0.00000 SCALE2 0.000000 0.019879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009743 0.00000