HEADER OXIDOREDUCTASE 22-AUG-15 5DBV TITLE STRUCTURE OF A C269A MUTANT OF PROPIONALDEHYDE DEHYDROGENASE FROM THE TITLE 2 CLOSTRIDIUM PHYTOFERMENTANS FUCOSE UTILISATION BACTERIAL TITLE 3 MICROCOMPARTMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-462; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS (STRAIN ATCC 700394 SOURCE 3 / DSM 18823 / ISDG); SOURCE 4 ORGANISM_TAXID: 357809; SOURCE 5 GENE: CPHY_1178; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ACYLATING ALDEHYDE DEHYDROGENASE, COA, PROPIONALDEHYDE, BMC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.R.TUCK,K.ALTENBACH,T.F.ANG,A.D.CRAWSHAW,D.J.CAMPOPIANO,D.J.CLARKE, AUTHOR 2 J.MARLES-WRIGHT REVDAT 4 10-JAN-24 5DBV 1 ATOM REVDAT 3 10-JAN-18 5DBV 1 SOURCE REVDAT 2 30-AUG-17 5DBV 1 REMARK REVDAT 1 16-MAR-16 5DBV 0 JRNL AUTH L.R.TUCK,K.ALTENBACH,T.F.ANG,A.D.CRAWSHAW,D.J.CAMPOPIANO, JRNL AUTH 2 D.J.CLARKE,J.MARLES-WRIGHT JRNL TITL INSIGHT INTO COENZYME A COFACTOR BINDING AND THE MECHANISM JRNL TITL 2 OF ACYL-TRANSFER IN AN ACYLATING ALDEHYDE DEHYDROGENASE FROM JRNL TITL 3 CLOSTRIDIUM PHYTOFERMENTANS. JRNL REF SCI REP V. 6 22108 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26899032 JRNL DOI 10.1038/SREP22108 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9024 - 4.2605 1.00 2891 161 0.1384 0.1631 REMARK 3 2 4.2605 - 3.3819 1.00 2777 146 0.1248 0.1391 REMARK 3 3 3.3819 - 2.9545 1.00 2732 151 0.1534 0.1866 REMARK 3 4 2.9545 - 2.6844 1.00 2738 149 0.1525 0.1897 REMARK 3 5 2.6844 - 2.4920 1.00 2702 153 0.1508 0.2261 REMARK 3 6 2.4920 - 2.3451 1.00 2678 163 0.1452 0.1905 REMARK 3 7 2.3451 - 2.2276 1.00 2713 127 0.1412 0.2053 REMARK 3 8 2.2276 - 2.1306 1.00 2711 131 0.1436 0.1774 REMARK 3 9 2.1306 - 2.0486 1.00 2693 144 0.1449 0.1734 REMARK 3 10 2.0486 - 1.9779 1.00 2705 137 0.1586 0.2179 REMARK 3 11 1.9779 - 1.9161 1.00 2677 161 0.1689 0.2417 REMARK 3 12 1.9161 - 1.8613 1.00 2684 124 0.1810 0.2281 REMARK 3 13 1.8613 - 1.8123 1.00 2722 125 0.1967 0.2459 REMARK 3 14 1.8123 - 1.7681 0.99 2625 144 0.2161 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3344 REMARK 3 ANGLE : 1.263 4528 REMARK 3 CHIRALITY : 0.052 531 REMARK 3 PLANARITY : 0.007 581 REMARK 3 DIHEDRAL : 14.563 1245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3561 15.9680 23.7955 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.2841 REMARK 3 T33: 0.1651 T12: -0.0243 REMARK 3 T13: 0.0069 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.1601 L22: 2.0763 REMARK 3 L33: 1.3569 L12: 0.9552 REMARK 3 L13: -0.7351 L23: -0.4605 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.2394 S13: 0.0508 REMARK 3 S21: 0.3020 S22: -0.1414 S23: -0.0456 REMARK 3 S31: -0.2608 S32: 0.0785 S33: -0.0140 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1305 11.8520 16.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.2046 REMARK 3 T33: 0.2105 T12: -0.0126 REMARK 3 T13: 0.0117 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.6679 L22: 0.7366 REMARK 3 L33: 1.6465 L12: 0.6354 REMARK 3 L13: -1.0313 L23: -0.5719 REMARK 3 S TENSOR REMARK 3 S11: 0.1128 S12: -0.2062 S13: -0.0392 REMARK 3 S21: 0.1734 S22: -0.1157 S23: 0.0077 REMARK 3 S31: -0.1398 S32: 0.0313 S33: 0.0084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3413 24.4825 16.0407 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.1306 REMARK 3 T33: 0.2361 T12: 0.0197 REMARK 3 T13: 0.0859 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.9775 L22: 2.2045 REMARK 3 L33: 4.0110 L12: -0.3032 REMARK 3 L13: -0.0617 L23: 0.3137 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: -0.0308 S13: 0.1505 REMARK 3 S21: 0.1522 S22: -0.0296 S23: 0.2339 REMARK 3 S31: -0.2708 S32: -0.3786 S33: -0.0169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2065 -0.3435 10.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.2218 REMARK 3 T33: 0.2495 T12: 0.0163 REMARK 3 T13: 0.0329 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.7709 L22: 1.4395 REMARK 3 L33: 1.2403 L12: 1.0396 REMARK 3 L13: -0.2057 L23: -0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0121 S13: 0.0077 REMARK 3 S21: 0.1036 S22: 0.0345 S23: 0.1646 REMARK 3 S31: -0.0243 S32: -0.1686 S33: -0.0715 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5534 -6.3707 11.2994 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.3409 REMARK 3 T33: 0.3133 T12: -0.0195 REMARK 3 T13: 0.0310 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.6408 L22: 0.7955 REMARK 3 L33: 1.8851 L12: -0.3057 REMARK 3 L13: -0.3783 L23: -0.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: -0.0179 S13: -0.1549 REMARK 3 S21: 0.0738 S22: 0.0435 S23: 0.2095 REMARK 3 S31: 0.0195 S32: -0.3998 S33: 0.0358 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9653 5.0472 5.0078 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.1794 REMARK 3 T33: 0.1943 T12: 0.0126 REMARK 3 T13: -0.0092 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.5148 L22: 1.1762 REMARK 3 L33: 1.2145 L12: 0.8753 REMARK 3 L13: -0.9985 L23: -0.4522 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0603 S13: -0.0406 REMARK 3 S21: 0.0209 S22: 0.0201 S23: -0.0464 REMARK 3 S31: -0.0495 S32: -0.0131 S33: -0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 - 4.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 49.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C3S REMARK 200 REMARK 200 REMARK: SQUARE BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 50 MM TRIS.HCL, PH 8.0, 35 REMARK 280 MM NACL. 1:1 HANGING DROPS OVER: 0.1 M SODIUM ACETATE, PH 4.5 - REMARK 280 4.8 1.4 - 1.8 M AMMONIUM SULPHATE. CRYSTALS SOAKED WITH 10 MM REMARK 280 COA IN WELL SOLUTION., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.13200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.22250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.11125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.13200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.33375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.33375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.13200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.11125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.13200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.22250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.13200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.22250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.13200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.33375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.11125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.13200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.11125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.33375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.13200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.13200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 42.22250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -184.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 504 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 878 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 336 REMARK 465 PRO A 337 REMARK 465 SER A 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 823 O HOH A 832 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 61.71 -118.80 REMARK 500 ASN A 239 70.29 -162.57 REMARK 500 HIS A 387 -83.47 -96.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 893 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 DBREF 5DBV A 20 462 UNP A9KN57 A9KN57_CLOPH 20 462 SEQADV 5DBV MET A 18 UNP A9KN57 INITIATING METHIONINE SEQADV 5DBV GLY A 19 UNP A9KN57 EXPRESSION TAG SEQADV 5DBV ALA A 269 UNP A9KN57 CYS 269 ENGINEERED MUTATION SEQRES 1 A 445 MET GLY GLN LEU THR GLN THR ASN LYS THR GLU LEU GLY SEQRES 2 A 445 VAL PHE ASP ASP MET ASN GLN ALA ILE GLU ALA ALA LYS SEQRES 3 A 445 GLU ALA GLN LEU VAL VAL LYS LYS MET SER MET ASP GLN SEQRES 4 A 445 ARG GLU LYS ILE ILE SER ALA ILE ARG LYS LYS THR ILE SEQRES 5 A 445 GLU HIS ALA GLU THR LEU ALA ARG MET ALA VAL GLU GLU SEQRES 6 A 445 THR GLY MET GLY ASN VAL GLY HIS LYS ILE LEU LYS HIS SEQRES 7 A 445 GLN LEU VAL ALA GLU LYS THR PRO GLY THR GLU ASP ILE SEQRES 8 A 445 THR THR THR ALA TRP SER GLY ASP ARG GLY LEU THR LEU SEQRES 9 A 445 VAL GLU MET GLY PRO PHE GLY VAL ILE GLY ALA ILE THR SEQRES 10 A 445 PRO CYS THR ASN PRO SER GLU THR ILE ILE CYS ASN THR SEQRES 11 A 445 ILE GLY MET LEU ALA GLY GLY ASN THR VAL VAL PHE ASN SEQRES 12 A 445 PRO HIS PRO ALA ALA ILE LYS THR SER ASN PHE ALA VAL SEQRES 13 A 445 GLN LEU ILE ASN GLU ALA SER LEU SER ALA GLY GLY PRO SEQRES 14 A 445 VAL ASN ILE ALA CYS SER VAL ARG LYS PRO THR LEU ASP SEQRES 15 A 445 SER SER LYS ILE MET MET SER HIS GLN ASP ILE PRO LEU SEQRES 16 A 445 ILE ALA ALA THR GLY GLY PRO GLY VAL VAL THR ALA VAL SEQRES 17 A 445 LEU GLN SER GLY LYS ARG GLY ILE GLY ALA GLY ALA GLY SEQRES 18 A 445 ASN PRO PRO VAL LEU VAL ASP GLU THR ALA ASP ILE ARG SEQRES 19 A 445 LYS ALA ALA GLU ASP ILE ILE ASN GLY CYS THR PHE ASP SEQRES 20 A 445 ASN ASN LEU PRO ALA ILE ALA GLU LYS GLU VAL VAL ALA SEQRES 21 A 445 ILE ASP ALA ILE ALA ASN GLU LEU MET ASN TYR MET VAL SEQRES 22 A 445 LYS GLU GLN GLY CYS TYR ALA ILE THR LYS GLU GLN GLN SEQRES 23 A 445 GLU LYS LEU THR ASN LEU VAL ILE THR PRO LYS GLY LEU SEQRES 24 A 445 ASN ARG ASN CYS VAL GLY LYS ASP ALA ARG THR LEU LEU SEQRES 25 A 445 GLY MET ILE GLY ILE ASP VAL PRO SER ASN ILE ARG CYS SEQRES 26 A 445 ILE ILE PHE GLU GLY GLU LYS GLU HIS PRO LEU ILE SER SEQRES 27 A 445 GLU GLU LEU MET MET PRO ILE LEU GLY ILE VAL ARG ALA SEQRES 28 A 445 LYS SER PHE ASP ASP ALA VAL GLU LYS ALA VAL TRP LEU SEQRES 29 A 445 GLU HIS GLY ASN ARG HIS SER ALA HIS ILE HIS SER LYS SEQRES 30 A 445 ASN VAL ASP ARG ILE THR THR TYR ALA LYS ALA ILE ASP SEQRES 31 A 445 THR ALA ILE LEU VAL LYS ASN ALA PRO SER TYR ALA ALA SEQRES 32 A 445 ILE GLY PHE GLY GLY GLU GLY PHE CYS THR PHE THR ILE SEQRES 33 A 445 ALA SER ARG THR GLY GLU GLY LEU THR SER ALA SER THR SEQRES 34 A 445 PHE THR LYS ARG ARG ARG CYS VAL MET SER ASP SER LEU SEQRES 35 A 445 CYS ILE ARG HET SO4 A 501 5 HET SO4 A 502 5 HET COA A 503 80 HET ACT A 504 7 HET ACT A 505 7 HET ACT A 506 7 HET ACT A 507 7 HET SO4 A 508 5 HETNAM SO4 SULFATE ION HETNAM COA COENZYME A HETNAM ACT ACETATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 4 COA C21 H36 N7 O16 P3 S FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 10 HOH *293(H2 O) HELIX 1 AA1 ASP A 34 LYS A 50 1 17 HELIX 2 AA2 SER A 53 HIS A 71 1 19 HELIX 3 AA3 HIS A 71 GLY A 84 1 14 HELIX 4 AA4 ASN A 87 THR A 102 1 16 HELIX 5 AA5 GLY A 104 ILE A 108 5 5 HELIX 6 AA6 ASN A 138 GLY A 153 1 16 HELIX 7 AA7 ALA A 165 ALA A 183 1 19 HELIX 8 AA8 THR A 197 HIS A 207 1 11 HELIX 9 AA9 GLY A 218 LEU A 226 1 9 HELIX 10 AB1 ASP A 249 PHE A 263 1 15 HELIX 11 AB2 ASP A 264 LEU A 267 5 4 HELIX 12 AB3 ASP A 279 GLN A 293 1 15 HELIX 13 AB4 THR A 299 VAL A 310 1 12 HELIX 14 AB5 ASP A 324 ILE A 332 1 9 HELIX 15 AB6 HIS A 351 GLU A 356 1 6 HELIX 16 AB7 SER A 370 HIS A 383 1 14 HELIX 17 AB8 ASN A 395 ASP A 407 1 13 HELIX 18 AB9 PRO A 416 GLY A 422 5 7 HELIX 19 AC1 SER A 443 THR A 446 5 4 SHEET 1 AA1 6 VAL A 31 PHE A 32 0 SHEET 2 AA1 6 ALA A 190 VAL A 193 1 O SER A 192 N PHE A 32 SHEET 3 AA1 6 THR A 156 ASN A 160 1 N PHE A 159 O CYS A 191 SHEET 4 AA1 6 VAL A 129 ILE A 133 1 N ILE A 130 O THR A 156 SHEET 5 AA1 6 LEU A 212 ALA A 215 1 O ALA A 214 N GLY A 131 SHEET 6 AA1 6 ARG A 231 GLY A 234 1 O ILE A 233 N ALA A 215 SHEET 1 AA2 3 THR A 111 GLY A 115 0 SHEET 2 AA2 3 GLY A 118 PRO A 126 -1 O THR A 120 N TRP A 113 SHEET 3 AA2 3 THR A 448 SER A 456 -1 O LYS A 449 N GLY A 125 SHEET 1 AA3 7 CYS A 295 ALA A 297 0 SHEET 2 AA3 7 CYS A 342 GLU A 346 1 O CYS A 342 N TYR A 296 SHEET 3 AA3 7 ILE A 362 ALA A 368 1 O LEU A 363 N ILE A 343 SHEET 4 AA3 7 GLU A 274 ILE A 278 1 N VAL A 275 O VAL A 366 SHEET 5 AA3 7 PRO A 241 VAL A 244 1 N VAL A 244 O VAL A 276 SHEET 6 AA3 7 SER A 388 HIS A 392 1 O HIS A 392 N LEU A 243 SHEET 7 AA3 7 ILE A 410 LYS A 413 1 O VAL A 412 N ILE A 391 SHEET 1 AA4 2 ILE A 311 THR A 312 0 SHEET 2 AA4 2 GLY A 315 LEU A 316 -1 O GLY A 315 N THR A 312 SHEET 1 AA5 2 ILE A 433 ALA A 434 0 SHEET 2 AA5 2 GLY A 440 LEU A 441 -1 O GLY A 440 N ALA A 434 CISPEP 1 GLY A 185 PRO A 186 0 9.80 SITE 1 AC1 9 SER A 53 MET A 54 ASP A 55 GLY A 115 SITE 2 AC1 9 ASP A 116 ARG A 117 GLU A 426 HOH A 714 SITE 3 AC1 9 HOH A 784 SITE 1 AC2 6 ARG A 398 HOH A 665 HOH A 671 HOH A 770 SITE 2 AC2 6 HOH A 782 HOH A 822 SITE 1 AC3 17 ILE A 133 THR A 134 ASN A 160 PRO A 161 SITE 2 AC3 17 HIS A 162 GLY A 217 VAL A 221 LEU A 267 SITE 3 AC3 17 ALA A 269 ARG A 318 GLU A 357 MET A 359 SITE 4 AC3 17 ACT A 506 HOH A 635 HOH A 674 HOH A 757 SITE 5 AC3 17 HOH A 787 SITE 1 AC4 3 HIS A 207 GLN A 208 HOH A 663 SITE 1 AC5 6 PRO A 268 ALA A 269 ILE A 270 ILE A 421 SITE 2 AC5 6 PHE A 431 ACT A 506 SITE 1 AC6 7 ASN A 138 ALA A 269 PHE A 431 COA A 503 SITE 2 AC6 7 ACT A 505 HOH A 635 HOH A 678 SITE 1 AC7 4 LYS A 101 ARG A 117 GLY A 422 GLY A 424 SITE 1 AC8 3 THR A 299 LYS A 300 HOH A 738 CRYST1 138.264 138.264 84.445 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011842 0.00000