HEADER OXIDOREDUCTASE 24-AUG-15 5DCW TITLE IRIDOID SYNTHASE FROM CATHARANTHUS ROSEUS - LIGAND FREE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRIDOID SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-388; COMPND 5 EC: 1.3.1.99; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE CRYSTALLISED PROTEIN CONTAINED RESIDUES 23-388 OF COMPND 8 THE WILD-TYPE AMINO ACID SEQUENCE. THE SEQUENCE DIFFERED FROM COMPND 9 DATABASE ENTRY K7WDL7 BY AN ASP TO ASN CHANGE AT POSITION 87. THE N- COMPND 10 TERMINUS RETAINED TWO RESIDUES FROM THE NICKEL AFFINITY CLEAVAGE COMPND 11 SITE. THE C-TERMINUS HAD AN ADDITIONAL THREE VECTOR-DERIVED RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATHARANTHUS ROSEUS; SOURCE 3 ORGANISM_COMMON: MADAGASCAR PERIWINKLE; SOURCE 4 ORGANISM_TAXID: 4058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS IRIDOID SYNTHASE, SHORT CHAIN DEHYDROGENASE, NADPH-DEPENDENT, KEYWDS 2 CATHARANTHUS ROSEUS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CAPUTI,H.KRIES,C.E.M.STEVENSON,M.O.KAMILEEN,N.H.SHERDEN,F.GEU- AUTHOR 2 FLORES,D.M.LAWSON,S.E.O'CONNOR REVDAT 4 10-JAN-24 5DCW 1 REMARK REVDAT 3 30-DEC-15 5DCW 1 JRNL REVDAT 2 18-NOV-15 5DCW 1 JRNL REVDAT 1 28-OCT-15 5DCW 0 JRNL AUTH H.KRIES,L.CAPUTI,C.E.STEVENSON,M.O.KAMILEEN,N.H.SHERDEN, JRNL AUTH 2 F.GEU-FLORES,D.M.LAWSON,S.E.O'CONNOR JRNL TITL STRUCTURAL DETERMINANTS OF REDUCTIVE TERPENE CYCLIZATION IN JRNL TITL 2 IRIDOID BIOSYNTHESIS. JRNL REF NAT.CHEM.BIOL. V. 12 6 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 26551396 JRNL DOI 10.1038/NCHEMBIO.1955 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2227 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2945 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2740 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4010 ; 1.533 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6320 ; 0.969 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.195 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;36.036 ;25.122 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;12.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;21.346 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3353 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 667 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 0.587 ; 1.176 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 0.587 ; 1.175 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1845 ; 1.025 ; 1.758 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -49.1055 134.7764 26.7751 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.0505 REMARK 3 T33: 0.0558 T12: 0.0451 REMARK 3 T13: 0.0368 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.4337 L22: 6.4506 REMARK 3 L33: 5.1682 L12: 0.5674 REMARK 3 L13: -0.0603 L23: -0.5854 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: 0.1964 S13: -0.1867 REMARK 3 S21: -0.4070 S22: -0.0270 S23: 0.2580 REMARK 3 S31: 0.4409 S32: 0.0295 S33: 0.1216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -62.2318 143.0195 37.5938 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.0987 REMARK 3 T33: 0.2449 T12: -0.1258 REMARK 3 T13: 0.1797 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 3.3592 L22: 5.9961 REMARK 3 L33: 2.2758 L12: -3.1460 REMARK 3 L13: 0.7904 L23: -1.9901 REMARK 3 S TENSOR REMARK 3 S11: -0.2618 S12: -0.0726 S13: -0.6453 REMARK 3 S21: 0.2074 S22: 0.1528 S23: 0.8959 REMARK 3 S31: 0.5406 S32: -0.4263 S33: 0.1090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): -66.0661 153.7516 20.4869 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.0937 REMARK 3 T33: 0.0102 T12: -0.0876 REMARK 3 T13: -0.0186 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.0726 L22: 1.0703 REMARK 3 L33: 3.0367 L12: -0.0715 REMARK 3 L13: 0.7966 L23: -0.8076 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: 0.1405 S13: -0.0145 REMARK 3 S21: -0.2739 S22: 0.1167 S23: 0.0963 REMARK 3 S31: 0.4047 S32: -0.3131 S33: -0.0871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5DCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.98600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.60000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.76093 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.35000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.60000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.76093 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.35000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.60000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.76093 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.35000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.60000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.76093 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.35000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.60000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.76093 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.35000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.60000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.76093 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.35000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.52186 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 81.52186 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 81.52186 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 81.52186 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.70000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 81.52186 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 70.70000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 81.52186 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 70.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 326.08743 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1215 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 CYS A 25 REMARK 465 LYS A 26 REMARK 465 SER A 27 REMARK 465 SER A 112 REMARK 465 GLU A 113 REMARK 465 ASP A 114 REMARK 465 GLU A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 66 NE CZ NH1 NH2 REMARK 470 LYS A 75 NZ REMARK 470 LYS A 76 NZ REMARK 470 CYS A 115 SG REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 VAL A 158 CG1 CG2 REMARK 470 ASN A 173 CG OD1 ND2 REMARK 470 VAL A 174 CG1 CG2 REMARK 470 PHE A 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 212 CG SD CE REMARK 470 MET A 213 SD CE REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 287 NZ REMARK 470 LYS A 304 CD CE NZ REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 333 CD CE NZ REMARK 470 LYS A 335 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 109 138.40 -39.72 REMARK 500 THR A 143 -106.48 -115.15 REMARK 500 ASN A 173 67.15 -67.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1310 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1311 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1312 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1313 DISTANCE = 7.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 DBREF 5DCW A 23 388 UNP K7WDL7 IRIS_CATRO 23 388 SEQADV 5DCW GLY A 21 UNP K7WDL7 EXPRESSION TAG SEQADV 5DCW PRO A 22 UNP K7WDL7 EXPRESSION TAG SEQADV 5DCW ASN A 87 UNP K7WDL7 ASP 87 CONFLICT SEQADV 5DCW LYS A 389 UNP K7WDL7 EXPRESSION TAG SEQADV 5DCW ALA A 390 UNP K7WDL7 EXPRESSION TAG SEQADV 5DCW PHE A 391 UNP K7WDL7 EXPRESSION TAG SEQRES 1 A 371 GLY PRO GLY VAL CYS LYS SER TYR LYS SER VAL ALA LEU SEQRES 2 A 371 VAL VAL GLY VAL THR GLY ILE VAL GLY SER SER LEU ALA SEQRES 3 A 371 GLU VAL LEU LYS LEU PRO ASP THR PRO GLY GLY PRO TRP SEQRES 4 A 371 LYS VAL TYR GLY VAL ALA ARG ARG PRO CYS PRO VAL TRP SEQRES 5 A 371 LEU ALA LYS LYS PRO VAL GLU TYR ILE GLN CYS ASP VAL SEQRES 6 A 371 SER ASN ASN GLN GLU THR ILE SER LYS LEU SER PRO LEU SEQRES 7 A 371 LYS ASP ILE THR HIS ILE PHE TYR VAL SER TRP ILE GLY SEQRES 8 A 371 SER GLU ASP CYS GLN THR ASN ALA THR MET PHE LYS ASN SEQRES 9 A 371 ILE LEU ASN SER VAL ILE PRO ASN ALA SER ASN LEU GLN SEQRES 10 A 371 HIS VAL CYS LEU GLN THR GLY ILE LYS HIS TYR PHE GLY SEQRES 11 A 371 ILE PHE GLU GLU GLY SER LYS VAL VAL PRO HIS ASP SER SEQRES 12 A 371 PRO PHE THR GLU ASP LEU PRO ARG LEU ASN VAL PRO ASN SEQRES 13 A 371 PHE TYR HIS ASP LEU GLU ASP ILE LEU TYR GLU GLU THR SEQRES 14 A 371 GLY LYS ASN ASN LEU THR TRP SER VAL HIS ARG PRO ALA SEQRES 15 A 371 LEU VAL PHE GLY PHE SER PRO CYS SER MET MET ASN ILE SEQRES 16 A 371 VAL SER THR LEU CYS VAL TYR ALA THR ILE CYS LYS HIS SEQRES 17 A 371 GLU ASN LYS ALA LEU VAL TYR PRO GLY SER LYS ASN SER SEQRES 18 A 371 TRP ASN CYS TYR ALA ASP ALA VAL ASP ALA ASP LEU VAL SEQRES 19 A 371 ALA GLU HIS GLU ILE TRP ALA ALA VAL ASP PRO LYS ALA SEQRES 20 A 371 LYS ASN GLN VAL LEU ASN CYS ASN ASN GLY ASP VAL PHE SEQRES 21 A 371 LYS TRP LYS HIS ILE TRP LYS LYS LEU ALA GLU GLU PHE SEQRES 22 A 371 GLY ILE GLU MET VAL GLY TYR VAL GLU GLY LYS GLU GLN SEQRES 23 A 371 VAL SER LEU ALA GLU LEU MET LYS ASP LYS ASP GLN VAL SEQRES 24 A 371 TRP ASP GLU ILE VAL LYS LYS ASN ASN LEU VAL PRO THR SEQRES 25 A 371 LYS LEU LYS GLU ILE ALA ALA PHE TRP PHE ALA ASP ILE SEQRES 26 A 371 ALA PHE CYS SER GLU ASN LEU ILE SER SER MET ASN LYS SEQRES 27 A 371 SER LYS GLU LEU GLY PHE LEU GLY PHE ARG ASN SER MET SEQRES 28 A 371 LYS SER PHE VAL SER CYS ILE ASP LYS MET ARG ASP TYR SEQRES 29 A 371 ARG PHE ILE PRO LYS ALA PHE HET EDO A 900 4 HET EDO A 901 4 HET EDO A 902 4 HET EDO A 903 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 HOH *313(H2 O) HELIX 1 AA1 GLY A 39 LEU A 49 1 11 HELIX 2 AA2 PRO A 70 LYS A 75 1 6 HELIX 3 AA3 ASN A 87 SER A 96 1 10 HELIX 4 AA4 GLN A 116 ILE A 130 1 15 HELIX 5 AA5 HIS A 147 ILE A 151 5 5 HELIX 6 AA6 ASN A 176 ASN A 192 1 17 HELIX 7 AA7 ASN A 214 GLU A 229 1 16 HELIX 8 AA8 SER A 238 CYS A 244 1 7 HELIX 9 AA9 ALA A 251 ASP A 264 1 14 HELIX 10 AB1 PRO A 265 LYS A 268 5 4 HELIX 11 AB2 LYS A 281 GLY A 294 1 14 HELIX 12 AB3 SER A 308 LYS A 314 1 7 HELIX 13 AB4 LYS A 316 ASN A 327 1 12 HELIX 14 AB5 LYS A 333 ALA A 338 1 6 HELIX 15 AB6 ALA A 339 PHE A 347 1 9 HELIX 16 AB7 MET A 356 LEU A 362 1 7 HELIX 17 AB8 ASN A 369 TYR A 384 1 16 SHEET 1 AA1 7 GLU A 79 GLN A 82 0 SHEET 2 AA1 7 TRP A 59 ALA A 65 1 N VAL A 61 O GLU A 79 SHEET 3 AA1 7 SER A 30 VAL A 35 1 N VAL A 34 O TYR A 62 SHEET 4 AA1 7 HIS A 103 TYR A 106 1 O PHE A 105 N LEU A 33 SHEET 5 AA1 7 HIS A 138 GLN A 142 1 O CYS A 140 N ILE A 104 SHEET 6 AA1 7 THR A 195 PRO A 201 1 O SER A 197 N LEU A 141 SHEET 7 AA1 7 GLN A 270 CYS A 274 1 O LEU A 272 N VAL A 198 SHEET 1 AA2 2 VAL A 204 PHE A 205 0 SHEET 2 AA2 2 VAL A 249 ASP A 250 1 O VAL A 249 N PHE A 205 SHEET 1 AA3 2 LEU A 233 VAL A 234 0 SHEET 2 AA3 2 MET A 297 VAL A 298 1 O VAL A 298 N LEU A 233 CISPEP 1 GLY A 57 PRO A 58 0 1.59 CISPEP 2 SER A 163 PRO A 164 0 -2.57 CISPEP 3 SER A 163 PRO A 164 0 -2.85 SITE 1 AC1 4 LYS A 288 GLU A 291 GLU A 292 HOH A1150 SITE 1 AC2 5 ASP A 250 ASP A 252 SER A 376 CYS A 377 SITE 2 AC2 5 HOH A1026 SITE 1 AC3 5 SER A 30 HIS A 103 GLN A 137 ALA A 262 SITE 2 AC3 5 LYS A 268 SITE 1 AC4 7 ALA A 338 ALA A 339 PHE A 340 TRP A 341 SITE 2 AC4 7 HOH A1004 HOH A1069 HOH A1159 CRYST1 141.200 141.200 106.050 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007082 0.004089 0.000000 0.00000 SCALE2 0.000000 0.008178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009430 0.00000