HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-AUG-15 5DCZ TITLE TANKYRASE 2 COMPLEXED WITH A SELECTIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PARP CATALYTIC RESIDUES 936-1166; COMPND 5 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 6 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 7 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 8 TANKYRASE-RELATED PROTEIN; COMPND 9 EC: 2.4.2.30; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNKS2, PARP5B, TANK2, TNKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.M.SHEWCHUK,M.MUELBAIER REVDAT 2 27-SEP-23 5DCZ 1 REMARK REVDAT 1 07-SEP-16 5DCZ 0 JRNL AUTH M.MUELBAIER,L.M.SHEWCHUK JRNL TITL DISCOVERY OF A NEW TOOL COMPOUND WITH SUPERIOR SELECTIVITY JRNL TITL 2 TO INTERROGATE THE BIOLOGY OF TANKYRASE JRNL REF J.MED.CHEM 2015 JRNL REFN ISSN 0022-2623 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 12337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1696 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1531 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2289 ; 1.023 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3510 ; 0.690 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 5.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.628 ;23.218 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;11.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.988 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1947 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 811 ; 1.305 ; 3.552 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 810 ; 1.301 ; 3.550 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1009 ; 2.259 ; 5.308 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1010 ; 2.258 ; 5.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 884 ; 1.403 ; 3.672 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 885 ; 1.402 ; 3.673 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1280 ; 2.444 ; 5.465 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1976 ; 4.862 ;28.932 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1977 ; 4.861 ;28.940 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 952 A 1161 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5120 -10.1723 -11.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: 0.0645 REMARK 3 T33: 0.0159 T12: 0.0100 REMARK 3 T13: 0.0087 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6831 L22: 1.4630 REMARK 3 L33: 0.3308 L12: -0.2641 REMARK 3 L13: -0.0993 L23: 0.4284 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.0959 S13: 0.0256 REMARK 3 S21: -0.0406 S22: -0.0114 S23: -0.0624 REMARK 3 S31: -0.0367 S32: -0.0445 S33: -0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 66.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3P0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY HANGING DROP REMARK 280 VAPOR DIFFUSION AT 22 DEG IN DROPLETS CONSISTING OF 0.2 UL REMARK 280 PROTEIN AND 0.2 UL OF 1.4-1.6 M NA/KPO4 PH 8.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.30500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.29950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.65250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.29950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.95750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.29950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.29950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.65250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.29950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.29950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.95750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1345 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 936 REMARK 465 GLN A 937 REMARK 465 GLN A 938 REMARK 465 GLY A 939 REMARK 465 LEU A 940 REMARK 465 ASN A 941 REMARK 465 PRO A 942 REMARK 465 TYR A 943 REMARK 465 LEU A 944 REMARK 465 THR A 945 REMARK 465 LEU A 946 REMARK 465 ASN A 947 REMARK 465 THR A 948 REMARK 465 SER A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 SER A 1111 REMARK 465 ALA A 1112 REMARK 465 MET A 1113 REMARK 465 LYS A 1114 REMARK 465 MET A 1115 REMARK 465 SER A 1130 REMARK 465 VAL A 1131 REMARK 465 GLY A 1162 REMARK 465 MET A 1163 REMARK 465 VAL A 1164 REMARK 465 ASP A 1165 REMARK 465 GLY A 1166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1004 CE NZ REMARK 470 LYS A1042 CD CE NZ REMARK 470 ARG A1047 CG CD NE CZ NH1 NH2 REMARK 470 HIS A1117 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A1128 NE CZ NH1 NH2 REMARK 470 GLU A1161 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1021 51.60 35.71 REMARK 500 ARG A1128 71.45 -112.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 HIS A1084 ND1 104.0 REMARK 620 3 CYS A1089 SG 109.7 105.9 REMARK 620 4 CYS A1092 SG 117.9 104.2 113.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 59B A 1203 DBREF 5DCZ A 936 1166 UNP Q9H2K2 TNKS2_HUMAN 936 1166 SEQRES 1 A 231 GLY GLN GLN GLY LEU ASN PRO TYR LEU THR LEU ASN THR SEQRES 2 A 231 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 3 A 231 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 4 A 231 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 5 A 231 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 6 A 231 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 7 A 231 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 8 A 231 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 9 A 231 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 10 A 231 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 11 A 231 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 12 A 231 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 13 A 231 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 14 A 231 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 15 A 231 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 16 A 231 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 17 A 231 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 18 A 231 ILE MET ARG PRO GLU GLY MET VAL ASP GLY HET ZN A1201 1 HET PO4 A1202 5 HET 59B A1203 28 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM 59B MORPHOLIN-4-YL[4-(TETRAZOLO[1,5-A]QUINOXALIN-4- HETNAM 2 59B YLAMINO)PHENYL]METHANONE FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 59B C19 H17 N7 O2 FORMUL 5 HOH *116(H2 O) HELIX 1 AA1 ASP A 962 THR A 975 1 14 HELIX 2 AA2 ASN A 1002 GLU A 1019 1 18 HELIX 3 AA3 PHE A 1035 GLY A 1043 1 9 HELIX 4 AA4 ASP A 1045 ALA A 1049 5 5 HELIX 5 AA5 ASN A 1064 GLN A 1070 1 7 HELIX 6 AA6 GLY A 1074 GLY A 1078 5 5 HELIX 7 AA7 ARG A 1143 GLU A 1145 5 3 SHEET 1 AA1 5 ILE A 954 ASP A 957 0 SHEET 2 AA1 5 TYR A 992 CYS A1001 -1 O LYS A 999 N ILE A 956 SHEET 3 AA1 5 ALA A1147 ILE A1157 -1 O THR A1154 N LYS A 996 SHEET 4 AA1 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR A1155 SHEET 5 AA1 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099 SHEET 1 AA2 4 ILE A1059 ALA A1062 0 SHEET 2 AA2 4 GLU A1138 ILE A1141 -1 O ILE A1141 N ILE A1059 SHEET 3 AA2 4 SER A1124 GLY A1127 -1 N GLY A1127 O GLU A1138 SHEET 4 AA2 4 SER A1106 GLN A1109 1 N PHE A1107 O THR A1126 LINK SG CYS A1081 ZN ZN A1201 1555 1555 2.34 LINK ND1 HIS A1084 ZN ZN A1201 1555 1555 2.18 LINK SG CYS A1089 ZN ZN A1201 1555 1555 2.36 LINK SG CYS A1092 ZN ZN A1201 1555 1555 2.27 SITE 1 AC1 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC2 6 ARG A 977 HIS A 979 ARG A 980 LYS A1067 SITE 2 AC2 6 HOH A1354 HOH A1355 SITE 1 AC3 14 PHE A1030 HIS A1031 GLY A1032 SER A1033 SITE 2 AC3 14 ARG A1047 HIS A1048 ALA A1049 TYR A1060 SITE 3 AC3 14 ALA A1062 SER A1068 TYR A1071 ILE A1075 SITE 4 AC3 14 GLU A1138 HOH A1316 CRYST1 66.599 66.599 114.610 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008725 0.00000