HEADER IMMUNE SYSTEM 24-AUG-15 5DD0 TITLE CRYSTAL STRUCTURES IN AN ANTI-HIV ANTIBODY LINEAGE FROM IMMUNIZATION TITLE 2 OF RHESUS MACAQUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-HIV ANTIBODY DH570 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-HIV ANTIBODY DH570 FAB HEAVY LIGHT; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: OLIGO PEPTIDE; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 15 ORGANISM_TAXID: 11676; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293 KEYWDS HIV HIV-1 GP41 MPER ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.VERKOCZY,K.WIEHE,S.M.ALAM,N.I.NICELY,S.SANTRA,T.BRADLEY, AUTHOR 2 C.PEMBLE,F.GAO,D.C.MONTEFIORI,H.BOUTON-VERVILLE,G.KELSOE,R.PARKS, AUTHOR 3 A.FOULGER,G.TOMARAS,T.B.KEPLE,M.A.MOODY,H.-X.LIAO,B.F.HAYNES REVDAT 5 27-SEP-23 5DD0 1 REMARK REVDAT 4 11-DEC-19 5DD0 1 REMARK REVDAT 3 20-SEP-17 5DD0 1 REMARK REVDAT 2 18-MAY-16 5DD0 1 COMPND REVDAT 1 11-MAY-16 5DD0 0 JRNL AUTH R.ZHANG,L.VERKOCZY,K.WIEHE,S.MUNIR ALAM,N.I.NICELY,S.SANTRA, JRNL AUTH 2 T.BRADLEY,C.W.PEMBLE,J.ZHANG,F.GAO,D.C.MONTEFIORI, JRNL AUTH 3 H.BOUTON-VERVILLE,G.KELSOE,K.LARIMORE,P.D.GREENBERG,R.PARKS, JRNL AUTH 4 A.FOULGER,J.N.PEEL,K.LUO,X.LU,A.M.TRAMA,N.VANDERGRIFT, JRNL AUTH 5 G.D.TOMARAS,T.B.KEPLER,M.A.MOODY,H.X.LIAO,B.F.HAYNES JRNL TITL INITIATION OF IMMUNE TOLERANCE-CONTROLLED HIV GP41 JRNL TITL 2 NEUTRALIZING B CELL LINEAGES. JRNL REF SCI TRANSL MED V. 8 6RA62 2016 JRNL REFN ESSN 1946-6242 JRNL PMID 27122615 JRNL DOI 10.1126/SCITRANSLMED.AAF0618 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3741 - 5.5147 1.00 1279 135 0.1675 0.2238 REMARK 3 2 5.5147 - 4.3855 1.00 1255 142 0.1567 0.1734 REMARK 3 3 4.3855 - 3.8336 1.00 1221 143 0.1971 0.2018 REMARK 3 4 3.8336 - 3.4841 1.00 1257 134 0.2469 0.3272 REMARK 3 5 3.4841 - 3.2350 1.00 1240 141 0.2300 0.2927 REMARK 3 6 3.2350 - 3.0447 1.00 1256 137 0.2555 0.3106 REMARK 3 7 3.0447 - 2.8924 1.00 1198 140 0.2574 0.3328 REMARK 3 8 2.8924 - 2.7667 1.00 1259 139 0.2723 0.3277 REMARK 3 9 2.7667 - 2.6603 1.00 1230 137 0.2806 0.3445 REMARK 3 10 2.6603 - 2.5686 1.00 1257 132 0.3053 0.3728 REMARK 3 11 2.5686 - 2.4884 0.93 1138 135 0.3233 0.3592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3477 REMARK 3 ANGLE : 0.718 4746 REMARK 3 CHIRALITY : 0.027 549 REMARK 3 PLANARITY : 0.003 596 REMARK 3 DIHEDRAL : 13.418 1217 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9892 21.4569 84.3302 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.4274 REMARK 3 T33: 0.2210 T12: -0.0768 REMARK 3 T13: 0.0042 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.9006 L22: 0.4318 REMARK 3 L33: 1.2790 L12: 0.3644 REMARK 3 L13: 0.4271 L23: -0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.2188 S12: 0.5631 S13: 0.0796 REMARK 3 S21: -0.1919 S22: 0.5204 S23: -0.1198 REMARK 3 S31: 0.0423 S32: 0.6481 S33: 0.2184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 33 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7973 21.4607 91.0558 REMARK 3 T TENSOR REMARK 3 T11: 0.2847 T22: 0.1659 REMARK 3 T33: 0.3755 T12: -0.0281 REMARK 3 T13: -0.0760 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6196 L22: 1.7851 REMARK 3 L33: 3.0891 L12: 0.1316 REMARK 3 L13: 0.9439 L23: 0.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.2989 S12: 0.1488 S13: 0.6251 REMARK 3 S21: -0.2340 S22: -0.3818 S23: 0.9037 REMARK 3 S31: 0.0729 S32: 0.1027 S33: 0.0893 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 45 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3701 20.9075 95.5213 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2256 REMARK 3 T33: 0.2002 T12: 0.0107 REMARK 3 T13: 0.0418 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.5334 L22: 1.6267 REMARK 3 L33: 1.1829 L12: -0.0630 REMARK 3 L13: 0.6036 L23: -0.2335 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.0489 S13: -0.0315 REMARK 3 S21: 0.0022 S22: 0.1263 S23: 0.0721 REMARK 3 S31: 0.0115 S32: 0.2417 S33: -0.1337 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 119 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7701 19.6005 65.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.2661 REMARK 3 T33: 0.2585 T12: 0.0203 REMARK 3 T13: 0.0556 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.0853 L22: 0.6779 REMARK 3 L33: 1.8730 L12: -0.2144 REMARK 3 L13: 0.9030 L23: -0.7072 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.3641 S13: -0.0387 REMARK 3 S21: -0.0990 S22: -0.0098 S23: 0.0310 REMARK 3 S31: 0.1653 S32: -0.0509 S33: 0.0088 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4845 33.0246 96.8927 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.1798 REMARK 3 T33: 0.4022 T12: 0.0329 REMARK 3 T13: 0.0701 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.6438 L22: 0.7977 REMARK 3 L33: 3.2684 L12: 0.1621 REMARK 3 L13: 1.0697 L23: -0.5996 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.0459 S13: -0.2958 REMARK 3 S21: 0.0523 S22: -0.1128 S23: 0.0958 REMARK 3 S31: -0.2499 S32: 0.2971 S33: 0.0761 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2848 35.5872 98.0032 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.1911 REMARK 3 T33: 0.1936 T12: 0.0199 REMARK 3 T13: -0.0100 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.3984 L22: 1.4041 REMARK 3 L33: 1.5231 L12: -0.3990 REMARK 3 L13: 0.7347 L23: 0.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0753 S13: 0.1937 REMARK 3 S21: -0.0287 S22: -0.0560 S23: -0.0549 REMARK 3 S31: -0.2107 S32: -0.1432 S33: 0.0591 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9476 34.2305 97.9346 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.2335 REMARK 3 T33: 0.1895 T12: -0.0068 REMARK 3 T13: -0.0422 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0151 L22: 0.7490 REMARK 3 L33: 0.9219 L12: 0.2690 REMARK 3 L13: 0.1777 L23: 0.4772 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: -0.0209 S13: 0.0177 REMARK 3 S21: 0.0274 S22: 0.1525 S23: 0.1344 REMARK 3 S31: -0.3103 S32: -0.0404 S33: 0.0069 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5765 36.3374 83.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: -0.0164 REMARK 3 T33: 0.4775 T12: 0.1650 REMARK 3 T13: -0.2343 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.2944 L22: 0.5338 REMARK 3 L33: 0.3983 L12: -0.2192 REMARK 3 L13: 0.0787 L23: -0.4137 REMARK 3 S TENSOR REMARK 3 S11: -0.2259 S12: -0.1303 S13: -0.0546 REMARK 3 S21: 0.1264 S22: -0.1670 S23: -0.4853 REMARK 3 S31: -0.0256 S32: 0.0574 S33: -1.3837 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7763 18.1248 73.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.2906 REMARK 3 T33: 0.2676 T12: 0.0556 REMARK 3 T13: 0.0095 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0498 L22: 3.5109 REMARK 3 L33: 1.4727 L12: 0.0847 REMARK 3 L13: 0.1518 L23: 1.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: 0.1091 S13: -0.2833 REMARK 3 S21: 0.0876 S22: 0.1878 S23: -0.0396 REMARK 3 S31: 0.0775 S32: 0.1801 S33: -0.1154 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7127 12.1328 80.5893 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.3008 REMARK 3 T33: 0.3013 T12: 0.0167 REMARK 3 T13: -0.0218 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.6388 L22: 0.4404 REMARK 3 L33: 0.1426 L12: 0.7887 REMARK 3 L13: -0.1489 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.6511 S13: -0.4668 REMARK 3 S21: -0.1833 S22: -0.3129 S23: -0.3607 REMARK 3 S31: -0.0052 S32: 0.0628 S33: 0.1104 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0930 19.5102 75.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2950 REMARK 3 T33: 0.2582 T12: 0.0054 REMARK 3 T13: -0.0118 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.0806 L22: 1.8572 REMARK 3 L33: 1.2574 L12: 0.1036 REMARK 3 L13: 0.2647 L23: 0.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: -0.0223 S13: -0.0038 REMARK 3 S21: 0.1773 S22: 0.1600 S23: 0.1595 REMARK 3 S31: 0.0080 S32: -0.0907 S33: -0.0620 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 660 THROUGH 670 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0968 25.9610 106.4469 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.3144 REMARK 3 T33: 0.2902 T12: 0.0111 REMARK 3 T13: -0.0235 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 3.8894 L22: 3.1177 REMARK 3 L33: 2.0186 L12: -0.4877 REMARK 3 L13: -0.7833 L23: 0.0507 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.0433 S13: 0.7093 REMARK 3 S21: -0.2157 S22: 0.2516 S23: 0.4296 REMARK 3 S31: -0.3321 S32: 0.7221 S33: -0.0451 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3Q6G, 2QQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 1500, 20% GLYCEROL, WITH REMARK 280 SEEDING, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.66600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.20300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.66600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.20300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 142 REMARK 465 SER H 143 REMARK 465 ARG H 144 REMARK 465 SER H 145 REMARK 465 THR H 146 REMARK 465 SER H 147 REMARK 465 GLU H 148 REMARK 465 LYS H 229 REMARK 465 THR H 230 REMARK 465 CYS H 231 REMARK 465 GLY H 232 REMARK 465 GLY H 233 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -17.42 78.87 REMARK 500 SER H 218 25.03 -143.76 REMARK 500 ASN H 219 -42.16 65.10 REMARK 500 SER L 30 -108.73 56.09 REMARK 500 ALA L 51 -28.46 70.13 REMARK 500 SER L 52 -1.24 -144.82 REMARK 500 SER L 77 75.09 53.52 REMARK 500 ALA L 84 -166.32 -170.95 REMARK 500 TYR L 91 35.55 -155.46 REMARK 500 ASN L 138 74.45 52.37 REMARK 500 LYS L 169 -62.06 -90.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DD1 RELATED DB: PDB REMARK 900 RELATED ID: 5DD3 RELATED DB: PDB REMARK 900 RELATED ID: 5DD5 RELATED DB: PDB REMARK 900 RELATED ID: 5DD6 RELATED DB: PDB DBREF 5DD0 H 1 233 PDB 5DD0 5DD0 1 233 DBREF 5DD0 L 1 214 PDB 5DD0 5DD0 1 214 DBREF 5DD0 P 659 671 PDB 5DD0 5DD0 659 671 SEQRES 1 H 233 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 233 PRO SER GLU THR LEU SER VAL THR CYS ALA VAL SER GLY SEQRES 3 H 233 VAL SER PHE SER SER PHE TRP TRP GLY TRP ILE ARG GLN SEQRES 4 H 233 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY THR ILE TYR SEQRES 5 H 233 GLY SER SER GLY ARG GLY GLU TYR ASN PRO SER LEU LYS SEQRES 6 H 233 SER ARG THR THR ILE SER ARG ASP THR SER LYS SER GLN SEQRES 7 H 233 ILE SER LEU GLU LEU THR SER VAL THR ALA ALA ASP THR SEQRES 8 H 233 ALA ILE TYR TYR CYS SER ARG GLY LEU PHE GLN PRO ASN SEQRES 9 H 233 GLY PHE SER PHE THR LEU THR SER TYR TRP PHE ASP VAL SEQRES 10 H 233 TRP GLY PRO GLY VAL PRO VAL THR VAL SER SER ALA SER SEQRES 11 H 233 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 233 ARG SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 233 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 233 ASN SER GLY SER LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 233 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 233 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 233 TYR VAL CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 233 VAL ASP LYS ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 214 ASP ILE GLN VAL THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP THR VAL THR ILE SER CYS ARG THR SER SEQRES 3 L 214 GLN SER ILE SER THR TRP LEU ALA TRP TYR GLN VAL LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR THR ALA SER SEQRES 5 L 214 SER LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ILE SER LEU PRO PRO THR PHE GLY LEU GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG ALA VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA SER VAL LYS TRP LYS VAL ASP GLY VAL LEU LYS THR SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 ASN THR ASP TYR GLN SER HIS ASN VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 P 13 ACE LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP NH2 HET ACE P 659 6 HET NH2 P 671 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 3 ACE C2 H4 O FORMUL 3 NH2 H2 N FORMUL 4 HOH *68(H2 O) HELIX 1 AA1 SER H 28 SER H 31 5 4 HELIX 2 AA2 THR H 87 THR H 91 5 5 HELIX 3 AA3 LYS H 216 ASN H 219 5 4 HELIX 4 AA4 GLN L 79 PHE L 83 5 5 HELIX 5 AA5 SER L 121 LYS L 126 1 6 HELIX 6 AA6 ASN L 183 SER L 188 1 6 HELIX 7 AA7 LEU P 660 TRP P 670 1 11 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA1 4 GLN H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 AA1 4 ILE H 70 ASP H 73 -1 N SER H 71 O SER H 80 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AA2 6 ALA H 92 LEU H 100 -1 N TYR H 94 O VAL H 122 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N ILE H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 TYR H 52 -1 O ILE H 51 N TRP H 34 SHEET 6 AA2 6 GLY H 58 TYR H 60 -1 O GLU H 59 N THR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AA3 4 ALA H 92 LEU H 100 -1 N TYR H 94 O VAL H 122 SHEET 4 AA3 4 TRP H 114 TRP H 118 -1 O TRP H 114 N LEU H 100 SHEET 1 AA4 4 SER H 135 LEU H 139 0 SHEET 2 AA4 4 THR H 150 TYR H 160 -1 O LEU H 156 N PHE H 137 SHEET 3 AA4 4 TYR H 191 PRO H 200 -1 O LEU H 193 N VAL H 157 SHEET 4 AA4 4 VAL H 178 THR H 180 -1 N HIS H 179 O VAL H 196 SHEET 1 AA5 4 SER H 135 LEU H 139 0 SHEET 2 AA5 4 THR H 150 TYR H 160 -1 O LEU H 156 N PHE H 137 SHEET 3 AA5 4 TYR H 191 PRO H 200 -1 O LEU H 193 N VAL H 157 SHEET 4 AA5 4 VAL H 184 LEU H 185 -1 N VAL H 184 O SER H 192 SHEET 1 AA6 3 THR H 166 TRP H 169 0 SHEET 2 AA6 3 VAL H 210 ASN H 214 -1 O ASN H 212 N SER H 168 SHEET 3 AA6 3 LYS H 221 ARG H 225 -1 O VAL H 222 N VAL H 213 SHEET 1 AA7 4 VAL L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 THR L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 VAL L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 VAL L 153 LEU L 154 0 SHEET 2 AB2 4 SER L 145 VAL L 150 -1 N VAL L 150 O VAL L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 155 CYS H 211 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK C ACE P 659 N LEU P 660 1555 1555 1.33 LINK C TRP P 670 N NH2 P 671 1555 1555 1.33 CISPEP 1 GLY H 105 PHE H 106 0 2.11 CISPEP 2 PHE H 161 PRO H 162 0 -2.89 CISPEP 3 GLU H 163 PRO H 164 0 -6.18 CISPEP 4 SER L 7 PRO L 8 0 -3.66 CISPEP 5 LEU L 94 PRO L 95 0 -2.24 CISPEP 6 TYR L 140 PRO L 141 0 3.10 CRYST1 147.332 80.406 37.861 90.00 102.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006787 0.000000 0.001532 0.00000 SCALE2 0.000000 0.012437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027077 0.00000