HEADER TRANSCRIPTION REGULATOR 24-AUG-15 5DD4 TITLE APO STRUCTURE OF TRANSCRIPTIONAL FACTOR ARAR FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ARAR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUDIX FAMILY HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 GENE: BT_0354; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ARAR, DNA BINDING, TRANSCRIPTIONAL REGULATOR, KEYWDS 3 BACTEROIDES THETAIOTAOMICRON, HELIX-TURN-HELIX MOTIF, NUDIX FOLD, KEYWDS 4 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.TESAR,D.RODIONOV,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 16-DEC-15 5DD4 1 JRNL REVDAT 2 21-OCT-15 5DD4 1 JRNL REVDAT 1 09-SEP-15 5DD4 0 JRNL AUTH C.CHANG,C.TESAR,X.LI,Y.KIM,D.A.RODIONOV,A.JOACHIMIAK JRNL TITL A NOVEL TRANSCRIPTIONAL REGULATOR OF L-ARABINOSE UTILIZATION JRNL TITL 2 IN HUMAN GUT BACTERIA. JRNL REF NUCLEIC ACIDS RES. V. 43 10546 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26438537 JRNL DOI 10.1093/NAR/GKV1005 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 9559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 479 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.438 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1849 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1764 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 1.311 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4069 ; 0.709 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.294 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;15.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.129 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2108 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 422 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5665 7.2987 32.5131 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0956 REMARK 3 T33: 0.1373 T12: -0.0503 REMARK 3 T13: -0.0203 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 10.5504 L22: 5.3294 REMARK 3 L33: 2.1421 L12: -6.4788 REMARK 3 L13: -2.6544 L23: 1.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.0933 S13: 0.0791 REMARK 3 S21: 0.0855 S22: -0.0782 S23: -0.0968 REMARK 3 S31: -0.1795 S32: 0.3783 S33: 0.1625 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8092 21.5097 30.1694 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.0370 REMARK 3 T33: 0.1321 T12: -0.0615 REMARK 3 T13: -0.0530 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 16.5673 L22: 6.9419 REMARK 3 L33: 4.4514 L12: 0.5532 REMARK 3 L13: -1.9691 L23: -0.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.3486 S13: 0.1680 REMARK 3 S21: -0.1067 S22: -0.1304 S23: -0.6239 REMARK 3 S31: -0.5491 S32: 0.2804 S33: 0.1349 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7151 14.2850 34.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0646 REMARK 3 T33: 0.0915 T12: -0.0580 REMARK 3 T13: -0.0422 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.0303 L22: 5.1013 REMARK 3 L33: 3.6381 L12: -1.3267 REMARK 3 L13: -0.3223 L23: -0.5861 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1627 S13: 0.1203 REMARK 3 S21: 0.2353 S22: -0.0339 S23: -0.2364 REMARK 3 S31: -0.3429 S32: 0.2411 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4535 13.2435 35.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0574 REMARK 3 T33: 0.2561 T12: -0.0466 REMARK 3 T13: -0.0149 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 4.2497 L22: 2.1196 REMARK 3 L33: 2.7373 L12: -2.9045 REMARK 3 L13: -2.7071 L23: 1.4902 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.2881 S13: -0.4397 REMARK 3 S21: -0.0735 S22: -0.1556 S23: 0.3849 REMARK 3 S31: 0.0317 S32: -0.2739 S33: 0.1035 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9055 17.2796 48.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.2640 REMARK 3 T33: 0.2563 T12: -0.0528 REMARK 3 T13: 0.0551 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 5.2733 L22: 9.9977 REMARK 3 L33: 6.8253 L12: -2.0441 REMARK 3 L13: -2.7944 L23: 5.2603 REMARK 3 S TENSOR REMARK 3 S11: -0.4153 S12: -0.2237 S13: -0.4821 REMARK 3 S21: -0.0806 S22: 0.2289 S23: 0.0296 REMARK 3 S31: 0.2175 S32: -0.4891 S33: 0.1864 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6116 2.5424 43.8281 REMARK 3 T TENSOR REMARK 3 T11: 0.8577 T22: 0.4808 REMARK 3 T33: 0.8123 T12: -0.2218 REMARK 3 T13: 0.2879 T23: -0.2239 REMARK 3 L TENSOR REMARK 3 L11: 18.7541 L22: 10.0314 REMARK 3 L33: 9.7090 L12: 0.9378 REMARK 3 L13: -0.0998 L23: -9.8382 REMARK 3 S TENSOR REMARK 3 S11: -0.9688 S12: 0.4351 S13: -1.4813 REMARK 3 S21: -0.2124 S22: 1.3109 S23: 0.4201 REMARK 3 S31: 0.2905 S32: -1.2686 S33: -0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111)DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.99200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M MALIC ACID, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 61.86750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 61.86750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 61.86750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 61.86750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.86750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 TYR A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 129 -131.54 52.31 REMARK 500 PRO A 150 43.11 -80.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DDG RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC111381 RELATED DB: TARGETTRACK DBREF 5DD4 A 1 225 UNP Q8AAV8 Q8AAV8_BACTN 1 225 SEQADV 5DD4 SER A -2 UNP Q8AAV8 EXPRESSION TAG SEQADV 5DD4 ASN A -1 UNP Q8AAV8 EXPRESSION TAG SEQADV 5DD4 ALA A 0 UNP Q8AAV8 EXPRESSION TAG SEQRES 1 A 228 SER ASN ALA MSE LYS ASN TYR TYR SER SER ASN PRO THR SEQRES 2 A 228 PHE TYR LEU GLY ILE ASP CYS ILE ILE PHE GLY PHE ASN SEQRES 3 A 228 GLU GLY GLU ILE SER LEU LEU LEU LEU LYS ARG ASN PHE SEQRES 4 A 228 GLU PRO ALA MSE GLY GLU TRP SER LEU MSE GLY GLY PHE SEQRES 5 A 228 VAL GLN LYS ASP GLU SER VAL ASP ASP ALA ALA LYS ARG SEQRES 6 A 228 VAL LEU ALA GLU LEU THR GLY LEU GLU ASN VAL TYR MSE SEQRES 7 A 228 GLU GLN VAL GLY ALA PHE GLY ALA ILE ASP ARG ASP PRO SEQRES 8 A 228 GLY GLU ARG VAL VAL SER ILE ALA TYR TYR ALA LEU ILE SEQRES 9 A 228 ASN ILE ASN GLU TYR ASP ARG GLU LEU VAL GLN LYS HIS SEQRES 10 A 228 ASN ALA TYR TRP VAL ASN ILE ASN GLU LEU PRO ALA LEU SEQRES 11 A 228 ILE PHE ASP HIS PRO GLU MSE VAL ASP LYS ALA ARG GLU SEQRES 12 A 228 MSE MSE LYS GLN LYS ALA SER VAL GLU PRO ILE GLY PHE SEQRES 13 A 228 ASN LEU LEU PRO LYS LEU PHE THR LEU SER GLN LEU GLN SEQRES 14 A 228 SER LEU TYR GLU ALA ILE TYR GLY GLU PRO MSE ASP LYS SEQRES 15 A 228 ARG ASN PHE ARG LYS ARG VAL ALA GLU MSE ASP PHE ILE SEQRES 16 A 228 GLU LYS THR ASP LYS ILE ASP LYS LEU GLY SER LYS ARG SEQRES 17 A 228 GLY ALA ALA LEU TYR LYS PHE ASN GLY LYS ALA TYR ARG SEQRES 18 A 228 LYS ASP PRO LYS PHE LYS LEU MODRES 5DD4 MSE A 40 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 46 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 75 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 134 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 141 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 142 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 177 MET MODIFIED RESIDUE MODRES 5DD4 MSE A 189 MET MODIFIED RESIDUE HET MSE A 40 8 HET MSE A 46 8 HET MSE A 75 8 HET MSE A 134 8 HET MSE A 141 8 HET MSE A 142 8 HET MSE A 177 8 HET MSE A 189 8 HET EDO A 301 4 HET ACT A 302 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *27(H2 O) HELIX 1 AA1 SER A 55 GLY A 69 1 15 HELIX 2 AA2 ASP A 107 ASN A 115 1 9 HELIX 3 AA3 ASP A 130 SER A 147 1 18 HELIX 4 AA4 VAL A 148 LEU A 156 5 9 HELIX 5 AA5 THR A 161 GLY A 174 1 14 HELIX 6 AA6 ASP A 178 GLU A 188 1 11 HELIX 7 AA7 ASN A 213 ASP A 220 1 8 SHEET 1 AA1 5 TRP A 43 SER A 44 0 SHEET 2 AA1 5 GLU A 26 LYS A 33 -1 N LEU A 32 O SER A 44 SHEET 3 AA1 5 TYR A 12 ASN A 23 -1 N GLY A 21 O SER A 28 SHEET 4 AA1 5 VAL A 92 LEU A 100 1 O TYR A 97 N ILE A 18 SHEET 5 AA1 5 TYR A 74 PHE A 81 -1 N PHE A 81 O SER A 94 SHEET 1 AA2 4 MSE A 46 PHE A 49 0 SHEET 2 AA2 4 TYR A 12 ASN A 23 -1 N CYS A 17 O MSE A 46 SHEET 3 AA2 4 GLU A 26 LYS A 33 -1 O SER A 28 N GLY A 21 SHEET 4 AA2 4 ALA A 116 ASN A 120 -1 O VAL A 119 N LEU A 29 SHEET 1 AA3 2 ILE A 192 LYS A 200 0 SHEET 2 AA3 2 GLY A 206 PHE A 212 -1 O LEU A 209 N THR A 195 LINK C ALA A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLY A 41 1555 1555 1.33 LINK C LEU A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N GLY A 47 1555 1555 1.32 LINK C TYR A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N GLU A 76 1555 1555 1.31 LINK C AGLU A 133 N MSE A 134 1555 1555 1.33 LINK C BGLU A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N VAL A 135 1555 1555 1.33 LINK C GLU A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N MSE A 142 1555 1555 1.32 LINK C MSE A 142 N LYS A 143 1555 1555 1.33 LINK C PRO A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N ASP A 178 1555 1555 1.33 LINK C GLU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ASP A 190 1555 1555 1.33 CISPEP 1 GLU A 37 PRO A 38 0 -5.42 SITE 1 AC1 5 ASP A 16 ARG A 86 ASP A 87 VAL A 92 SITE 2 AC1 5 HIS A 131 SITE 1 AC2 2 GLU A 133 LYS A 137 CRYST1 123.735 123.735 123.735 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008082 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008082 0.00000