data_5DDG # _entry.id 5DDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DDG WWPDB D_1000213052 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5DD4 PDB . unspecified MCSG-APC111381 TargetTrack . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DDG _pdbx_database_status.recvd_initial_deposition_date 2015-08-24 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Tesar, C.' 2 'Rodionov, D.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 10546 _citation.page_last 10559 _citation.title 'A novel transcriptional regulator of L-arabinose utilization in human gut bacteria.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv1005 _citation.pdbx_database_id_PubMed 26438537 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Tesar, C.' 2 primary 'Li, X.' 3 primary 'Kim, Y.' 4 primary 'Rodionov, D.A.' 5 primary 'Joachimiak, A.' 6 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DDG _cell.details ? _cell.formula_units_Z ? _cell.length_a 163.017 _cell.length_a_esd ? _cell.length_b 163.017 _cell.length_b_esd ? _cell.length_c 163.017 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transcriptional factor AraR' 26622.131 2 ? ? ? ? 2 polymer syn 'DNA (27-MER)' 8235.335 1 ? ? ? ? 3 polymer syn 'DNA (27-MER)' 8355.407 1 ? ? ? ? 4 non-polymer syn 'MALONIC ACID' 104.061 2 ? ? ? ? 5 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 6 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NUDIX family hydrolase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SNA(MSE)KNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPA(MSE)GEWSL(MSE)GGFVQKDESVDDAAKRVLA ELTGLENVY(MSE)EQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPE(MSE)VDK ARE(MSE)(MSE)KQKASVEPIGFNLLPKLFTLSQLQSLYEAIYGEP(MSE)DKRNFRKRVAE(MSE)DFIEKTDKIDKL GSKRGAALYKFNGKAYRKDPKFKL ; ;SNAMKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ VGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQKASVEPIGFNLLP KLFTLSQLQSLYEAIYGEPMDKRNFRKRVAEMDFIEKTDKIDKLGSKRGAALYKFNGKAYRKDPKFKL ; A,B MCSG-APC111381 2 polydeoxyribonucleotide no no ;(DG)(DC)(DA)(DA)(DA)(DA)(DG)(DT)(DG)(DT)(DT)(DA)(DC)(DT)(DT)(DT)(DT)(DA)(DC)(DA) (DC)(DC)(DC)(DA)(DT)(DG)(DC) ; GCAAAAGTGTTACTTTTACACCCATGC C ? 3 polydeoxyribonucleotide no no ;(DG)(DC)(DA)(DT)(DG)(DG)(DG)(DT)(DG)(DT)(DA)(DA)(DA)(DA)(DG)(DT)(DA)(DA)(DC)(DA) (DC)(DT)(DT)(DT)(DT)(DG)(DC) ; GCATGGGTGTAAAAGTAACACTTTTGC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LYS n 1 6 ASN n 1 7 TYR n 1 8 TYR n 1 9 SER n 1 10 SER n 1 11 ASN n 1 12 PRO n 1 13 THR n 1 14 PHE n 1 15 TYR n 1 16 LEU n 1 17 GLY n 1 18 ILE n 1 19 ASP n 1 20 CYS n 1 21 ILE n 1 22 ILE n 1 23 PHE n 1 24 GLY n 1 25 PHE n 1 26 ASN n 1 27 GLU n 1 28 GLY n 1 29 GLU n 1 30 ILE n 1 31 SER n 1 32 LEU n 1 33 LEU n 1 34 LEU n 1 35 LEU n 1 36 LYS n 1 37 ARG n 1 38 ASN n 1 39 PHE n 1 40 GLU n 1 41 PRO n 1 42 ALA n 1 43 MSE n 1 44 GLY n 1 45 GLU n 1 46 TRP n 1 47 SER n 1 48 LEU n 1 49 MSE n 1 50 GLY n 1 51 GLY n 1 52 PHE n 1 53 VAL n 1 54 GLN n 1 55 LYS n 1 56 ASP n 1 57 GLU n 1 58 SER n 1 59 VAL n 1 60 ASP n 1 61 ASP n 1 62 ALA n 1 63 ALA n 1 64 LYS n 1 65 ARG n 1 66 VAL n 1 67 LEU n 1 68 ALA n 1 69 GLU n 1 70 LEU n 1 71 THR n 1 72 GLY n 1 73 LEU n 1 74 GLU n 1 75 ASN n 1 76 VAL n 1 77 TYR n 1 78 MSE n 1 79 GLU n 1 80 GLN n 1 81 VAL n 1 82 GLY n 1 83 ALA n 1 84 PHE n 1 85 GLY n 1 86 ALA n 1 87 ILE n 1 88 ASP n 1 89 ARG n 1 90 ASP n 1 91 PRO n 1 92 GLY n 1 93 GLU n 1 94 ARG n 1 95 VAL n 1 96 VAL n 1 97 SER n 1 98 ILE n 1 99 ALA n 1 100 TYR n 1 101 TYR n 1 102 ALA n 1 103 LEU n 1 104 ILE n 1 105 ASN n 1 106 ILE n 1 107 ASN n 1 108 GLU n 1 109 TYR n 1 110 ASP n 1 111 ARG n 1 112 GLU n 1 113 LEU n 1 114 VAL n 1 115 GLN n 1 116 LYS n 1 117 HIS n 1 118 ASN n 1 119 ALA n 1 120 TYR n 1 121 TRP n 1 122 VAL n 1 123 ASN n 1 124 ILE n 1 125 ASN n 1 126 GLU n 1 127 LEU n 1 128 PRO n 1 129 ALA n 1 130 LEU n 1 131 ILE n 1 132 PHE n 1 133 ASP n 1 134 HIS n 1 135 PRO n 1 136 GLU n 1 137 MSE n 1 138 VAL n 1 139 ASP n 1 140 LYS n 1 141 ALA n 1 142 ARG n 1 143 GLU n 1 144 MSE n 1 145 MSE n 1 146 LYS n 1 147 GLN n 1 148 LYS n 1 149 ALA n 1 150 SER n 1 151 VAL n 1 152 GLU n 1 153 PRO n 1 154 ILE n 1 155 GLY n 1 156 PHE n 1 157 ASN n 1 158 LEU n 1 159 LEU n 1 160 PRO n 1 161 LYS n 1 162 LEU n 1 163 PHE n 1 164 THR n 1 165 LEU n 1 166 SER n 1 167 GLN n 1 168 LEU n 1 169 GLN n 1 170 SER n 1 171 LEU n 1 172 TYR n 1 173 GLU n 1 174 ALA n 1 175 ILE n 1 176 TYR n 1 177 GLY n 1 178 GLU n 1 179 PRO n 1 180 MSE n 1 181 ASP n 1 182 LYS n 1 183 ARG n 1 184 ASN n 1 185 PHE n 1 186 ARG n 1 187 LYS n 1 188 ARG n 1 189 VAL n 1 190 ALA n 1 191 GLU n 1 192 MSE n 1 193 ASP n 1 194 PHE n 1 195 ILE n 1 196 GLU n 1 197 LYS n 1 198 THR n 1 199 ASP n 1 200 LYS n 1 201 ILE n 1 202 ASP n 1 203 LYS n 1 204 LEU n 1 205 GLY n 1 206 SER n 1 207 LYS n 1 208 ARG n 1 209 GLY n 1 210 ALA n 1 211 ALA n 1 212 LEU n 1 213 TYR n 1 214 LYS n 1 215 PHE n 1 216 ASN n 1 217 GLY n 1 218 LYS n 1 219 ALA n 1 220 TYR n 1 221 ARG n 1 222 LYS n 1 223 ASP n 1 224 PRO n 1 225 LYS n 1 226 PHE n 1 227 LYS n 1 228 LEU n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DA n 2 5 DA n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DA n 2 19 DC n 2 20 DA n 2 21 DC n 2 22 DC n 2 23 DC n 2 24 DA n 2 25 DT n 2 26 DG n 2 27 DC n 3 1 DG n 3 2 DC n 3 3 DA n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DG n 3 8 DT n 3 9 DG n 3 10 DT n 3 11 DA n 3 12 DA n 3 13 DA n 3 14 DA n 3 15 DG n 3 16 DT n 3 17 DA n 3 18 DA n 3 19 DC n 3 20 DA n 3 21 DC n 3 22 DT n 3 23 DT n 3 24 DT n 3 25 DT n 3 26 DG n 3 27 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 228 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_0354 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 27 'Bacteroides thetaiotaomicron VPI-5482' ? 226186 ? 3 1 sample 1 27 'Bacteroides thetaiotaomicron VPI-5482' ? 226186 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q8AAV8_BACTN Q8AAV8 ? 1 ;MKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA FGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQKASVEPIGFNLLPKLF TLSQLQSLYEAIYGEPMDKRNFRKRVAEMDFIEKTDKIDKLGSKRGAALYKFNGKAYRKDPKFKL ; 1 2 PDB 5DDG 5DDG ? 2 ? 1 3 PDB 5DDG 5DDG ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5DDG A 4 ? 228 ? Q8AAV8 1 ? 225 ? 1 225 2 1 5DDG B 4 ? 228 ? Q8AAV8 1 ? 225 ? 1 225 3 2 5DDG C 1 ? 27 ? 5DDG 1 ? 27 ? 1 27 4 3 5DDG D 1 ? 27 ? 5DDG 1 ? 27 ? 1 27 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DDG SER A 1 ? UNP Q8AAV8 ? ? 'expression tag' -2 1 1 5DDG ASN A 2 ? UNP Q8AAV8 ? ? 'expression tag' -1 2 1 5DDG ALA A 3 ? UNP Q8AAV8 ? ? 'expression tag' 0 3 2 5DDG SER B 1 ? UNP Q8AAV8 ? ? 'expression tag' -2 4 2 5DDG ASN B 2 ? UNP Q8AAV8 ? ? 'expression tag' -1 5 2 5DDG ALA B 3 ? UNP Q8AAV8 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLA non-polymer . 'MALONIC ACID' 'DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID' 'C3 H4 O4' 104.061 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DDG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20mM Magnesium chloride, 50 mM MOPS, 55% Tacsimate, 5mM hexammine cobalt chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-03-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97903 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97903 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DDG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.050 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27538 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.200 _reflns.pdbx_Rmerge_I_obs 0.110 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 13.103 _reflns.pdbx_netI_over_sigmaI 11.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.991 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 142294 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.050 3.080 ? ? ? ? ? 667 ? 100.000 ? ? ? ? 0.851 ? ? ? ? ? ? ? ? 5.200 ? 0.772 ? ? ? ? 0 1 1 ? ? 3.080 3.100 ? ? ? ? ? 663 ? 100.000 ? ? ? ? 0.817 ? ? ? ? ? ? ? ? 5.300 ? 0.750 ? ? ? ? 0 2 1 ? ? 3.100 3.130 ? ? ? ? ? 713 ? 100.000 ? ? ? ? 0.735 ? ? ? ? ? ? ? ? 5.200 ? 0.822 ? ? ? ? 0 3 1 ? ? 3.130 3.160 ? ? ? ? ? 677 ? 100.000 ? ? ? ? 0.595 ? ? ? ? ? ? ? ? 5.300 ? 0.848 ? ? ? ? 0 4 1 ? ? 3.160 3.190 ? ? ? ? ? 690 ? 100.000 ? ? ? ? 0.479 ? ? ? ? ? ? ? ? 5.300 ? 0.901 ? ? ? ? 0 5 1 ? ? 3.190 3.220 ? ? ? ? ? 672 ? 100.000 ? ? ? ? 0.511 ? ? ? ? ? ? ? ? 5.200 ? 0.926 ? ? ? ? 0 6 1 ? ? 3.220 3.250 ? ? ? ? ? 693 ? 99.900 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 5.200 ? 1.071 ? ? ? ? 0 7 1 ? ? 3.250 3.290 ? ? ? ? ? 677 ? 100.000 ? ? ? ? 0.242 ? ? ? ? ? ? ? ? 5.300 ? 1.029 ? ? ? ? 0 8 1 ? ? 3.290 3.320 ? ? ? ? ? 695 ? 100.000 ? ? ? ? 0.248 ? ? ? ? ? ? ? ? 5.200 ? 1.036 ? ? ? ? 0 9 1 ? ? 3.320 3.360 ? ? ? ? ? 650 ? 100.000 ? ? ? ? 0.302 ? ? ? ? ? ? ? ? 5.300 ? 1.090 ? ? ? ? 0 10 1 ? ? 3.360 3.400 ? ? ? ? ? 713 ? 100.000 ? ? ? ? 0.277 ? ? ? ? ? ? ? ? 5.200 ? 0.996 ? ? ? ? 0 11 1 ? ? 3.400 3.430 ? ? ? ? ? 694 ? 100.000 ? ? ? ? 0.257 ? ? ? ? ? ? ? ? 5.300 ? 1.029 ? ? ? ? 0 12 1 ? ? 3.430 3.480 ? ? ? ? ? 658 ? 100.000 ? ? ? ? 0.229 ? ? ? ? ? ? ? ? 5.200 ? 1.042 ? ? ? ? 0 13 1 ? ? 3.480 3.520 ? ? ? ? ? 687 ? 100.000 ? ? ? ? 0.210 ? ? ? ? ? ? ? ? 5.300 ? 0.978 ? ? ? ? 0 14 1 ? ? 3.520 3.570 ? ? ? ? ? 700 ? 100.000 ? ? ? ? 0.194 ? ? ? ? ? ? ? ? 5.200 ? 0.966 ? ? ? ? 0 15 1 ? ? 3.570 3.620 ? ? ? ? ? 680 ? 100.000 ? ? ? ? 0.189 ? ? ? ? ? ? ? ? 5.300 ? 1.024 ? ? ? ? 0 16 1 ? ? 3.620 3.670 ? ? ? ? ? 684 ? 100.000 ? ? ? ? 0.182 ? ? ? ? ? ? ? ? 5.300 ? 0.974 ? ? ? ? 0 17 1 ? ? 3.670 3.720 ? ? ? ? ? 664 ? 99.800 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 5.200 ? 1.007 ? ? ? ? 0 18 1 ? ? 3.720 3.780 ? ? ? ? ? 705 ? 99.900 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 5.300 ? 1.062 ? ? ? ? 0 19 1 ? ? 3.780 3.840 ? ? ? ? ? 689 ? 99.900 ? ? ? ? 0.138 ? ? ? ? ? ? ? ? 5.300 ? 1.070 ? ? ? ? 0 20 1 ? ? 3.840 3.910 ? ? ? ? ? 687 ? 100.000 ? ? ? ? 0.127 ? ? ? ? ? ? ? ? 5.200 ? 1.102 ? ? ? ? 0 21 1 ? ? 3.910 3.980 ? ? ? ? ? 676 ? 99.900 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 5.200 ? 1.067 ? ? ? ? 0 22 1 ? ? 3.980 4.060 ? ? ? ? ? 697 ? 100.000 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 5.300 ? 1.037 ? ? ? ? 0 23 1 ? ? 4.060 4.140 ? ? ? ? ? 674 ? 99.900 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? 5.200 ? 1.009 ? ? ? ? 0 24 1 ? ? 4.140 4.230 ? ? ? ? ? 689 ? 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 5.200 ? 0.973 ? ? ? ? 0 25 1 ? ? 4.230 4.330 ? ? ? ? ? 688 ? 99.900 ? ? ? ? 0.096 ? ? ? ? ? ? ? ? 5.200 ? 0.997 ? ? ? ? 0 26 1 ? ? 4.330 4.440 ? ? ? ? ? 702 ? 100.000 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 5.200 ? 1.018 ? ? ? ? 0 27 1 ? ? 4.440 4.560 ? ? ? ? ? 669 ? 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 5.200 ? 1.045 ? ? ? ? 0 28 1 ? ? 4.560 4.690 ? ? ? ? ? 714 ? 100.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 5.200 ? 0.960 ? ? ? ? 0 29 1 ? ? 4.690 4.840 ? ? ? ? ? 683 ? 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 5.200 ? 0.979 ? ? ? ? 0 30 1 ? ? 4.840 5.010 ? ? ? ? ? 674 ? 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 5.200 ? 1.021 ? ? ? ? 0 31 1 ? ? 5.010 5.210 ? ? ? ? ? 711 ? 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 5.100 ? 0.884 ? ? ? ? 0 32 1 ? ? 5.210 5.450 ? ? ? ? ? 694 ? 100.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 5.100 ? 0.979 ? ? ? ? 0 33 1 ? ? 5.450 5.740 ? ? ? ? ? 690 ? 100.000 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 5.100 ? 1.024 ? ? ? ? 0 34 1 ? ? 5.740 6.100 ? ? ? ? ? 704 ? 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 5.100 ? 0.972 ? ? ? ? 0 35 1 ? ? 6.100 6.570 ? ? ? ? ? 707 ? 100.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 5.100 ? 0.992 ? ? ? ? 0 36 1 ? ? 6.570 7.230 ? ? ? ? ? 695 ? 100.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 5.000 ? 0.898 ? ? ? ? 0 37 1 ? ? 7.230 8.270 ? ? ? ? ? 717 ? 99.900 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 4.900 ? 1.009 ? ? ? ? 0 38 1 ? ? 8.270 10.400 ? ? ? ? ? 712 ? 98.600 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 4.700 ? 1.113 ? ? ? ? 0 39 1 ? ? 10.400 50.000 ? ? ? ? ? 684 ? 90.100 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 4.100 ? 1.276 ? ? ? ? 0 40 1 ? ? # _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.B_iso_max 202.640 _refine.B_iso_mean 64.3190 _refine.B_iso_min 32.470 _refine.correlation_coeff_Fo_to_Fc 0.9240 _refine.correlation_coeff_Fo_to_Fc_free 0.9010 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DDG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0600 _refine.ls_d_res_low 49.2000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25711 _refine.ls_number_reflns_R_free 1349 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.7600 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2011 _refine.ls_R_factor_R_free 0.2299 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1996 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.5290 _refine.pdbx_overall_ESU_R_Free 0.3100 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 12.7970 _refine.overall_SU_ML 0.2200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0600 _refine_hist.d_res_low 49.2000 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 4762 _refine_hist.pdbx_number_residues_total 503 _refine_hist.pdbx_B_iso_mean_ligand 67.60 _refine_hist.pdbx_B_iso_mean_solvent 47.44 _refine_hist.pdbx_number_atoms_protein 3619 _refine_hist.pdbx_number_atoms_nucleic_acid 1107 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.017 4953 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 4169 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.328 1.766 6902 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.915 3.000 9648 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.434 5.000 447 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 37.559 24.426 183 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.882 15.000 620 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 11.956 15.000 22 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.071 0.200 684 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 4846 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1119 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.0560 _refine_ls_shell.d_res_low 3.1350 _refine_ls_shell.number_reflns_all 1708 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 89 _refine_ls_shell.number_reflns_R_work 1619 _refine_ls_shell.percent_reflns_obs 84.6000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3550 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3180 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DDG _struct.title 'The structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI in complex with target double strand DNA' _struct.pdbx_descriptor 'transcriptional factor AraR/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DDG _struct_keywords.text ;Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, AraR, DNA binding, TRANSCRIPTIONAL REGULATOR, BACTEROIDES THETAIOTAOMICRON, HELIX-TURN-HELIX MOTIF, NUDIX FOLD, TRANSCRIPTION REGULATOR-DNA complex ; _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 4 ? I N N 6 ? J N N 6 ? K N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MSE A 4 ? SER A 10 ? MSE A 1 SER A 7 1 ? 7 HELX_P HELX_P2 AA2 SER A 58 ? GLY A 72 ? SER A 55 GLY A 69 1 ? 15 HELX_P HELX_P3 AA3 ASP A 110 ? HIS A 117 ? ASP A 107 HIS A 114 1 ? 8 HELX_P HELX_P4 AA4 ASN A 125 ? LEU A 127 ? ASN A 122 LEU A 124 5 ? 3 HELX_P HELX_P5 AA5 ASP A 133 ? SER A 150 ? ASP A 130 SER A 147 1 ? 18 HELX_P HELX_P6 AA6 ILE A 154 ? LEU A 159 ? ILE A 151 LEU A 156 5 ? 6 HELX_P HELX_P7 AA7 THR A 164 ? GLY A 177 ? THR A 161 GLY A 174 1 ? 14 HELX_P HELX_P8 AA8 ASP A 181 ? MSE A 192 ? ASP A 178 MSE A 189 1 ? 12 HELX_P HELX_P9 AA9 ASN A 216 ? ASP A 223 ? ASN A 213 ASP A 220 1 ? 8 HELX_P HELX_P10 AB1 TYR B 7 ? ASN B 11 ? TYR B 4 ASN B 8 5 ? 5 HELX_P HELX_P11 AB2 SER B 58 ? GLY B 72 ? SER B 55 GLY B 69 1 ? 15 HELX_P HELX_P12 AB3 ASP B 110 ? ASN B 118 ? ASP B 107 ASN B 115 1 ? 9 HELX_P HELX_P13 AB4 ASP B 133 ? GLU B 152 ? ASP B 130 GLU B 149 1 ? 20 HELX_P HELX_P14 AB5 ILE B 154 ? LEU B 159 ? ILE B 151 LEU B 156 5 ? 6 HELX_P HELX_P15 AB6 THR B 164 ? GLY B 177 ? THR B 161 GLY B 174 1 ? 14 HELX_P HELX_P16 AB7 ASP B 181 ? MSE B 192 ? ASP B 178 MSE B 189 1 ? 12 HELX_P HELX_P17 AB8 ASN B 216 ? ASP B 223 ? ASN B 213 ASP B 220 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale both ? A MSE 4 C ? ? ? 1_555 A LYS 5 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale both ? A ALA 42 C ? ? ? 1_555 A MSE 43 N ? ? A ALA 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 43 C ? ? ? 1_555 A GLY 44 N ? ? A MSE 40 A GLY 41 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale both ? A LEU 48 C ? ? ? 1_555 A MSE 49 N ? ? A LEU 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.318 ? covale6 covale both ? A MSE 49 C ? ? ? 1_555 A GLY 50 N ? ? A MSE 46 A GLY 47 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale both ? A TYR 77 C ? ? ? 1_555 A MSE 78 N ? ? A TYR 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.339 ? covale8 covale both ? A MSE 78 C ? ? ? 1_555 A GLU 79 N ? ? A MSE 75 A GLU 76 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale both ? A GLU 136 C ? ? ? 1_555 A MSE 137 N ? ? A GLU 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? A MSE 137 C ? ? ? 1_555 A VAL 138 N ? ? A MSE 134 A VAL 135 1_555 ? ? ? ? ? ? ? 1.321 ? covale11 covale both ? A GLU 143 C ? ? ? 1_555 A MSE 144 N ? ? A GLU 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.322 ? covale12 covale both ? A MSE 144 C ? ? ? 1_555 A MSE 145 N ? ? A MSE 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.324 ? covale13 covale both ? A MSE 145 C ? ? ? 1_555 A LYS 146 N ? ? A MSE 142 A LYS 143 1_555 ? ? ? ? ? ? ? 1.320 ? covale14 covale both ? A PRO 179 C ? ? ? 1_555 A MSE 180 N ? ? A PRO 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.316 ? covale15 covale both ? A MSE 180 C ? ? ? 1_555 A ASP 181 N ? ? A MSE 177 A ASP 178 1_555 ? ? ? ? ? ? ? 1.321 ? covale16 covale both ? A GLU 191 C ? ? ? 1_555 A MSE 192 N ? ? A GLU 188 A MSE 189 1_555 ? ? ? ? ? ? ? 1.324 ? covale17 covale both ? A MSE 192 C ? ? ? 1_555 A ASP 193 N ? ? A MSE 189 A ASP 190 1_555 ? ? ? ? ? ? ? 1.323 ? covale18 covale both ? B ALA 42 C ? ? ? 1_555 B MSE 43 N ? ? B ALA 39 B MSE 40 1_555 ? ? ? ? ? ? ? 1.327 ? covale19 covale both ? B MSE 43 C ? ? ? 1_555 B GLY 44 N ? ? B MSE 40 B GLY 41 1_555 ? ? ? ? ? ? ? 1.319 ? covale20 covale both ? B LEU 48 C ? ? ? 1_555 B MSE 49 N ? ? B LEU 45 B MSE 46 1_555 ? ? ? ? ? ? ? 1.324 ? covale21 covale both ? B MSE 49 C ? ? ? 1_555 B GLY 50 N ? ? B MSE 46 B GLY 47 1_555 ? ? ? ? ? ? ? 1.320 ? covale22 covale both ? B TYR 77 C ? ? ? 1_555 B MSE 78 N ? ? B TYR 74 B MSE 75 1_555 ? ? ? ? ? ? ? 1.330 ? covale23 covale both ? B MSE 78 C ? ? ? 1_555 B GLU 79 N ? ? B MSE 75 B GLU 76 1_555 ? ? ? ? ? ? ? 1.333 ? covale24 covale both ? B GLU 136 C ? ? ? 1_555 B MSE 137 N ? ? B GLU 133 B MSE 134 1_555 ? ? ? ? ? ? ? 1.340 ? covale25 covale both ? B MSE 137 C ? ? ? 1_555 B VAL 138 N ? ? B MSE 134 B VAL 135 1_555 ? ? ? ? ? ? ? 1.323 ? covale26 covale both ? B GLU 143 C ? ? ? 1_555 B MSE 144 N ? ? B GLU 140 B MSE 141 1_555 ? ? ? ? ? ? ? 1.322 ? covale27 covale both ? B MSE 144 C ? ? ? 1_555 B MSE 145 N ? ? B MSE 141 B MSE 142 1_555 ? ? ? ? ? ? ? 1.322 ? covale28 covale both ? B MSE 145 C ? ? ? 1_555 B LYS 146 N ? ? B MSE 142 B LYS 143 1_555 ? ? ? ? ? ? ? 1.331 ? covale29 covale both ? B PRO 179 C ? ? ? 1_555 B MSE 180 N ? ? B PRO 176 B MSE 177 1_555 ? ? ? ? ? ? ? 1.326 ? covale30 covale both ? B MSE 180 C ? ? ? 1_555 B ASP 181 N ? ? B MSE 177 B ASP 178 1_555 ? ? ? ? ? ? ? 1.328 ? covale31 covale both ? B GLU 191 C ? ? ? 1_555 B MSE 192 N ? ? B GLU 188 B MSE 189 1_555 ? ? ? ? ? ? ? 1.327 ? covale32 covale both ? B MSE 192 C ? ? ? 1_555 B ASP 193 N ? ? B MSE 189 B ASP 190 1_555 ? ? ? ? ? ? ? 1.327 ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 27 N3 ? ? C DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 27 O2 ? ? C DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 27 N4 ? ? C DG 1 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 26 N1 ? ? C DC 2 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 26 O6 ? ? C DC 2 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 26 N2 ? ? C DC 2 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 25 N3 ? ? C DA 3 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 25 O4 ? ? C DA 3 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 24 N3 ? ? C DA 4 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 24 O4 ? ? C DA 4 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 23 N3 ? ? C DA 5 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 23 O4 ? ? C DA 5 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 22 N3 ? ? C DA 6 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 22 O4 ? ? C DA 6 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 21 N3 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 21 O2 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 21 N4 ? ? C DG 7 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 20 N1 ? ? C DT 8 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 20 N6 ? ? C DT 8 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 19 N3 ? ? C DG 9 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 19 O2 ? ? C DG 9 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 19 N4 ? ? C DG 9 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 18 N1 ? ? C DT 10 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 18 N6 ? ? C DT 10 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 17 N1 ? ? C DT 11 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 17 N6 ? ? C DT 11 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 12 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 12 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 15 N1 ? ? C DC 13 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 15 O6 ? ? C DC 13 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 15 N2 ? ? C DC 13 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 14 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 14 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 13 N1 ? ? C DT 15 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 13 N6 ? ? C DT 15 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 16 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 16 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 17 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C DT 17 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 17 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C DA 18 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 18 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? C DA 18 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 18 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? C DC 19 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 19 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? C DC 19 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 19 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? C DC 19 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 19 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? C DA 20 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 20 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? C DA 20 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 20 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? C DC 21 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? C DC 21 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? C DC 21 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 21 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? C DC 22 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 22 D DG 6 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog51 hydrog ? ? C DC 23 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 23 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? C DC 23 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 23 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? C DC 23 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 23 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? C DA 24 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 24 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? C DA 24 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 24 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? C DT 25 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 25 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? C DT 25 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 25 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? C DG 26 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 26 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? C DG 26 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 26 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? C DG 26 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 26 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? C DC 27 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 27 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? C DC 27 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 27 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? C DC 27 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 27 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 40 A . ? GLU 37 A PRO 41 A ? PRO 38 A 1 -1.98 2 GLU 40 B . ? GLU 37 B PRO 41 B ? PRO 38 B 1 -0.15 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 5 ? AA5 ? 4 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 46 ? SER A 47 ? TRP A 43 SER A 44 AA1 2 GLU A 29 ? LYS A 36 ? GLU A 26 LYS A 33 AA1 3 TYR A 15 ? ASN A 26 ? TYR A 12 ASN A 23 AA1 4 VAL A 95 ? LEU A 103 ? VAL A 92 LEU A 100 AA1 5 TYR A 77 ? PHE A 84 ? TYR A 74 PHE A 81 AA2 1 MSE A 49 ? PHE A 52 ? MSE A 46 PHE A 49 AA2 2 TYR A 15 ? ASN A 26 ? TYR A 12 ASN A 23 AA2 3 GLU A 29 ? LYS A 36 ? GLU A 26 LYS A 33 AA2 4 ALA A 119 ? ASN A 123 ? ALA A 116 ASN A 120 AA3 1 ILE A 195 ? ASP A 202 ? ILE A 192 ASP A 199 AA3 2 ALA A 210 ? PHE A 215 ? ALA A 207 PHE A 212 AA4 1 TRP B 46 ? SER B 47 ? TRP B 43 SER B 44 AA4 2 GLU B 29 ? LYS B 36 ? GLU B 26 LYS B 33 AA4 3 TYR B 15 ? ASN B 26 ? TYR B 12 ASN B 23 AA4 4 VAL B 95 ? LEU B 103 ? VAL B 92 LEU B 100 AA4 5 TYR B 77 ? PHE B 84 ? TYR B 74 PHE B 81 AA5 1 MSE B 49 ? PHE B 52 ? MSE B 46 PHE B 49 AA5 2 TYR B 15 ? ASN B 26 ? TYR B 12 ASN B 23 AA5 3 GLU B 29 ? LYS B 36 ? GLU B 26 LYS B 33 AA5 4 ALA B 119 ? ASN B 123 ? ALA B 116 ASN B 120 AA6 1 ILE B 195 ? ASP B 202 ? ILE B 192 ASP B 199 AA6 2 ALA B 210 ? PHE B 215 ? ALA B 207 PHE B 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 47 ? O SER A 44 N LEU A 35 ? N LEU A 32 AA1 2 3 O GLU A 29 ? O GLU A 26 N ASN A 26 ? N ASN A 23 AA1 3 4 N PHE A 23 ? N PHE A 20 O ALA A 102 ? O ALA A 99 AA1 4 5 O ALA A 99 ? O ALA A 96 N VAL A 81 ? N VAL A 78 AA2 1 2 O MSE A 49 ? O MSE A 46 N CYS A 20 ? N CYS A 17 AA2 2 3 N ASN A 26 ? N ASN A 23 O GLU A 29 ? O GLU A 26 AA2 3 4 N LEU A 32 ? N LEU A 29 O VAL A 122 ? O VAL A 119 AA3 1 2 N THR A 198 ? N THR A 195 O LEU A 212 ? O LEU A 209 AA4 1 2 O SER B 47 ? O SER B 44 N LEU B 35 ? N LEU B 32 AA4 2 3 O GLU B 29 ? O GLU B 26 N ASN B 26 ? N ASN B 23 AA4 3 4 N PHE B 23 ? N PHE B 20 O ALA B 102 ? O ALA B 99 AA4 4 5 O ALA B 99 ? O ALA B 96 N VAL B 81 ? N VAL B 78 AA5 1 2 O MSE B 49 ? O MSE B 46 N CYS B 20 ? N CYS B 17 AA5 2 3 N ASN B 26 ? N ASN B 23 O GLU B 29 ? O GLU B 26 AA5 3 4 N LEU B 34 ? N LEU B 31 O TYR B 120 ? O TYR B 117 AA6 1 2 N ASP B 202 ? N ASP B 199 O ALA B 210 ? O ALA B 207 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MLA 301 ? 5 'binding site for residue MLA A 301' AC2 Software A FMT 302 ? 1 'binding site for residue FMT A 302' AC3 Software B FMT 301 ? 2 'binding site for residue FMT B 301' AC4 Software B MLA 302 ? 5 'binding site for residue MLA B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 19 ? ASP A 16 . ? 1_555 ? 2 AC1 5 ARG A 89 ? ARG A 86 . ? 1_555 ? 3 AC1 5 ASP A 90 ? ASP A 87 . ? 1_555 ? 4 AC1 5 VAL A 95 ? VAL A 92 . ? 1_555 ? 5 AC1 5 HIS A 134 ? HIS A 131 . ? 1_555 ? 6 AC2 1 LYS A 140 ? LYS A 137 . ? 1_555 ? 7 AC3 2 ASP A 60 ? ASP A 57 . ? 1_555 ? 8 AC3 2 LYS B 140 ? LYS B 137 . ? 1_555 ? 9 AC4 5 ASP B 19 ? ASP B 16 . ? 1_555 ? 10 AC4 5 ARG B 89 ? ARG B 86 . ? 1_555 ? 11 AC4 5 ASP B 90 ? ASP B 87 . ? 1_555 ? 12 AC4 5 VAL B 95 ? VAL B 92 . ? 1_555 ? 13 AC4 5 HIS B 134 ? HIS B 131 . ? 1_555 ? # _atom_sites.entry_id 5DDG _atom_sites.fract_transf_matrix[1][1] 0.006134 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006134 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006134 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LYS 5 2 2 LYS ALA A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 TYR 7 4 4 TYR TYR A . n A 1 8 TYR 8 5 5 TYR TYR A . n A 1 9 SER 9 6 6 SER SER A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 ASN 11 8 8 ASN ASN A . n A 1 12 PRO 12 9 9 PRO PRO A . n A 1 13 THR 13 10 10 THR THR A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 TYR 15 12 12 TYR TYR A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 ILE 18 15 15 ILE ILE A . n A 1 19 ASP 19 16 16 ASP ASP A . n A 1 20 CYS 20 17 17 CYS CYS A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 PHE 23 20 20 PHE PHE A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 PHE 25 22 22 PHE PHE A . n A 1 26 ASN 26 23 23 ASN ASN A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 ILE 30 27 27 ILE ILE A . n A 1 31 SER 31 28 28 SER SER A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 PHE 39 36 36 PHE PHE A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 PRO 41 38 38 PRO PRO A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 MSE 43 40 40 MSE MSE A . n A 1 44 GLY 44 41 41 GLY GLY A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 TRP 46 43 43 TRP TRP A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 MSE 49 46 46 MSE MSE A . n A 1 50 GLY 50 47 47 GLY GLY A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 PHE 52 49 49 PHE PHE A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 LYS 55 52 52 LYS LYS A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 VAL 59 56 56 VAL VAL A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 ASP 61 58 58 ASP ASP A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 ASN 75 72 72 ASN ASN A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 MSE 78 75 75 MSE MSE A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 GLN 80 77 77 GLN GLN A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 PHE 84 81 81 PHE PHE A . n A 1 85 GLY 85 82 82 GLY GLY A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 ILE 87 84 84 ILE ILE A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 ARG 89 86 86 ARG ARG A . n A 1 90 ASP 90 87 87 ASP ASP A . n A 1 91 PRO 91 88 88 PRO PRO A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 SER 97 94 94 SER SER A . n A 1 98 ILE 98 95 95 ILE ILE A . n A 1 99 ALA 99 96 96 ALA ALA A . n A 1 100 TYR 100 97 97 TYR TYR A . n A 1 101 TYR 101 98 98 TYR TYR A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 ILE 104 101 101 ILE ILE A . n A 1 105 ASN 105 102 102 ASN ASN A . n A 1 106 ILE 106 103 103 ILE ILE A . n A 1 107 ASN 107 104 104 ASN ASN A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 TYR 109 106 106 TYR TYR A . n A 1 110 ASP 110 107 107 ASP ASP A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 LEU 113 110 110 LEU LEU A . n A 1 114 VAL 114 111 111 VAL VAL A . n A 1 115 GLN 115 112 112 GLN GLN A . n A 1 116 LYS 116 113 113 LYS LYS A . n A 1 117 HIS 117 114 114 HIS HIS A . n A 1 118 ASN 118 115 115 ASN ASN A . n A 1 119 ALA 119 116 116 ALA ALA A . n A 1 120 TYR 120 117 117 TYR TYR A . n A 1 121 TRP 121 118 118 TRP TRP A . n A 1 122 VAL 122 119 119 VAL VAL A . n A 1 123 ASN 123 120 120 ASN ASN A . n A 1 124 ILE 124 121 121 ILE ILE A . n A 1 125 ASN 125 122 122 ASN ASN A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 LEU 130 127 127 LEU LEU A . n A 1 131 ILE 131 128 128 ILE ILE A . n A 1 132 PHE 132 129 129 PHE PHE A . n A 1 133 ASP 133 130 130 ASP ASP A . n A 1 134 HIS 134 131 131 HIS HIS A . n A 1 135 PRO 135 132 132 PRO PRO A . n A 1 136 GLU 136 133 133 GLU GLU A . n A 1 137 MSE 137 134 134 MSE MSE A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 ASP 139 136 136 ASP ASP A . n A 1 140 LYS 140 137 137 LYS LYS A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 ARG 142 139 139 ARG ARG A . n A 1 143 GLU 143 140 140 GLU GLU A . n A 1 144 MSE 144 141 141 MSE MSE A . n A 1 145 MSE 145 142 142 MSE MSE A . n A 1 146 LYS 146 143 143 LYS LYS A . n A 1 147 GLN 147 144 144 GLN GLN A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 ALA 149 146 146 ALA ALA A . n A 1 150 SER 150 147 147 SER SER A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 GLU 152 149 149 GLU GLU A . n A 1 153 PRO 153 150 150 PRO PRO A . n A 1 154 ILE 154 151 151 ILE ILE A . n A 1 155 GLY 155 152 152 GLY GLY A . n A 1 156 PHE 156 153 153 PHE PHE A . n A 1 157 ASN 157 154 154 ASN ASN A . n A 1 158 LEU 158 155 155 LEU LEU A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 PRO 160 157 157 PRO PRO A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 LEU 162 159 159 LEU LEU A . n A 1 163 PHE 163 160 160 PHE PHE A . n A 1 164 THR 164 161 161 THR THR A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 SER 166 163 163 SER SER A . n A 1 167 GLN 167 164 164 GLN GLN A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 GLN 169 166 166 GLN GLN A . n A 1 170 SER 170 167 167 SER SER A . n A 1 171 LEU 171 168 168 LEU LEU A . n A 1 172 TYR 172 169 169 TYR TYR A . n A 1 173 GLU 173 170 170 GLU GLU A . n A 1 174 ALA 174 171 171 ALA ALA A . n A 1 175 ILE 175 172 172 ILE ILE A . n A 1 176 TYR 176 173 173 TYR TYR A . n A 1 177 GLY 177 174 174 GLY GLY A . n A 1 178 GLU 178 175 175 GLU GLU A . n A 1 179 PRO 179 176 176 PRO PRO A . n A 1 180 MSE 180 177 177 MSE MSE A . n A 1 181 ASP 181 178 178 ASP ASP A . n A 1 182 LYS 182 179 179 LYS LYS A . n A 1 183 ARG 183 180 180 ARG ARG A . n A 1 184 ASN 184 181 181 ASN ASN A . n A 1 185 PHE 185 182 182 PHE PHE A . n A 1 186 ARG 186 183 183 ARG ARG A . n A 1 187 LYS 187 184 184 LYS LYS A . n A 1 188 ARG 188 185 185 ARG ARG A . n A 1 189 VAL 189 186 186 VAL VAL A . n A 1 190 ALA 190 187 187 ALA ALA A . n A 1 191 GLU 191 188 188 GLU GLU A . n A 1 192 MSE 192 189 189 MSE MSE A . n A 1 193 ASP 193 190 190 ASP ASP A . n A 1 194 PHE 194 191 191 PHE PHE A . n A 1 195 ILE 195 192 192 ILE ILE A . n A 1 196 GLU 196 193 193 GLU GLU A . n A 1 197 LYS 197 194 194 LYS LYS A . n A 1 198 THR 198 195 195 THR THR A . n A 1 199 ASP 199 196 196 ASP ASP A . n A 1 200 LYS 200 197 197 LYS LYS A . n A 1 201 ILE 201 198 198 ILE ILE A . n A 1 202 ASP 202 199 199 ASP ASP A . n A 1 203 LYS 203 200 200 LYS LYS A . n A 1 204 LEU 204 201 201 LEU ALA A . n A 1 205 GLY 205 202 202 GLY GLY A . n A 1 206 SER 206 203 203 SER SER A . n A 1 207 LYS 207 204 204 LYS LYS A . n A 1 208 ARG 208 205 205 ARG ARG A . n A 1 209 GLY 209 206 206 GLY GLY A . n A 1 210 ALA 210 207 207 ALA ALA A . n A 1 211 ALA 211 208 208 ALA ALA A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 TYR 213 210 210 TYR TYR A . n A 1 214 LYS 214 211 211 LYS LYS A . n A 1 215 PHE 215 212 212 PHE PHE A . n A 1 216 ASN 216 213 213 ASN ASN A . n A 1 217 GLY 217 214 214 GLY GLY A . n A 1 218 LYS 218 215 215 LYS LYS A . n A 1 219 ALA 219 216 216 ALA ALA A . n A 1 220 TYR 220 217 217 TYR TYR A . n A 1 221 ARG 221 218 218 ARG ARG A . n A 1 222 LYS 222 219 219 LYS LYS A . n A 1 223 ASP 223 220 220 ASP ASP A . n A 1 224 PRO 224 221 221 PRO PRO A . n A 1 225 LYS 225 222 222 LYS LYS A . n A 1 226 PHE 226 223 223 PHE PHE A . n A 1 227 LYS 227 224 224 LYS LYS A . n A 1 228 LEU 228 225 225 LEU LEU A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 LYS 5 2 ? ? ? B . n B 1 6 ASN 6 3 3 ASN ALA B . n B 1 7 TYR 7 4 4 TYR TYR B . n B 1 8 TYR 8 5 5 TYR TYR B . n B 1 9 SER 9 6 6 SER SER B . n B 1 10 SER 10 7 7 SER SER B . n B 1 11 ASN 11 8 8 ASN ASN B . n B 1 12 PRO 12 9 9 PRO PRO B . n B 1 13 THR 13 10 10 THR THR B . n B 1 14 PHE 14 11 11 PHE PHE B . n B 1 15 TYR 15 12 12 TYR TYR B . n B 1 16 LEU 16 13 13 LEU LEU B . n B 1 17 GLY 17 14 14 GLY GLY B . n B 1 18 ILE 18 15 15 ILE ILE B . n B 1 19 ASP 19 16 16 ASP ASP B . n B 1 20 CYS 20 17 17 CYS CYS B . n B 1 21 ILE 21 18 18 ILE ILE B . n B 1 22 ILE 22 19 19 ILE ILE B . n B 1 23 PHE 23 20 20 PHE PHE B . n B 1 24 GLY 24 21 21 GLY GLY B . n B 1 25 PHE 25 22 22 PHE PHE B . n B 1 26 ASN 26 23 23 ASN ASN B . n B 1 27 GLU 27 24 24 GLU GLU B . n B 1 28 GLY 28 25 25 GLY GLY B . n B 1 29 GLU 29 26 26 GLU GLU B . n B 1 30 ILE 30 27 27 ILE ILE B . n B 1 31 SER 31 28 28 SER SER B . n B 1 32 LEU 32 29 29 LEU LEU B . n B 1 33 LEU 33 30 30 LEU LEU B . n B 1 34 LEU 34 31 31 LEU LEU B . n B 1 35 LEU 35 32 32 LEU LEU B . n B 1 36 LYS 36 33 33 LYS LYS B . n B 1 37 ARG 37 34 34 ARG ARG B . n B 1 38 ASN 38 35 35 ASN ASN B . n B 1 39 PHE 39 36 36 PHE PHE B . n B 1 40 GLU 40 37 37 GLU GLU B . n B 1 41 PRO 41 38 38 PRO PRO B . n B 1 42 ALA 42 39 39 ALA ALA B . n B 1 43 MSE 43 40 40 MSE MSE B . n B 1 44 GLY 44 41 41 GLY GLY B . n B 1 45 GLU 45 42 42 GLU GLU B . n B 1 46 TRP 46 43 43 TRP TRP B . n B 1 47 SER 47 44 44 SER SER B . n B 1 48 LEU 48 45 45 LEU LEU B . n B 1 49 MSE 49 46 46 MSE MSE B . n B 1 50 GLY 50 47 47 GLY GLY B . n B 1 51 GLY 51 48 48 GLY GLY B . n B 1 52 PHE 52 49 49 PHE PHE B . n B 1 53 VAL 53 50 50 VAL VAL B . n B 1 54 GLN 54 51 51 GLN GLN B . n B 1 55 LYS 55 52 52 LYS LYS B . n B 1 56 ASP 56 53 53 ASP ASP B . n B 1 57 GLU 57 54 54 GLU GLU B . n B 1 58 SER 58 55 55 SER SER B . n B 1 59 VAL 59 56 56 VAL VAL B . n B 1 60 ASP 60 57 57 ASP ASP B . n B 1 61 ASP 61 58 58 ASP ASP B . n B 1 62 ALA 62 59 59 ALA ALA B . n B 1 63 ALA 63 60 60 ALA ALA B . n B 1 64 LYS 64 61 61 LYS LYS B . n B 1 65 ARG 65 62 62 ARG ARG B . n B 1 66 VAL 66 63 63 VAL VAL B . n B 1 67 LEU 67 64 64 LEU LEU B . n B 1 68 ALA 68 65 65 ALA ALA B . n B 1 69 GLU 69 66 66 GLU GLU B . n B 1 70 LEU 70 67 67 LEU LEU B . n B 1 71 THR 71 68 68 THR THR B . n B 1 72 GLY 72 69 69 GLY GLY B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 GLU 74 71 71 GLU GLU B . n B 1 75 ASN 75 72 72 ASN ASN B . n B 1 76 VAL 76 73 73 VAL VAL B . n B 1 77 TYR 77 74 74 TYR TYR B . n B 1 78 MSE 78 75 75 MSE MSE B . n B 1 79 GLU 79 76 76 GLU GLU B . n B 1 80 GLN 80 77 77 GLN GLN B . n B 1 81 VAL 81 78 78 VAL VAL B . n B 1 82 GLY 82 79 79 GLY GLY B . n B 1 83 ALA 83 80 80 ALA ALA B . n B 1 84 PHE 84 81 81 PHE PHE B . n B 1 85 GLY 85 82 82 GLY GLY B . n B 1 86 ALA 86 83 83 ALA ALA B . n B 1 87 ILE 87 84 84 ILE ILE B . n B 1 88 ASP 88 85 85 ASP ASP B . n B 1 89 ARG 89 86 86 ARG ARG B . n B 1 90 ASP 90 87 87 ASP ASP B . n B 1 91 PRO 91 88 88 PRO PRO B . n B 1 92 GLY 92 89 89 GLY GLY B . n B 1 93 GLU 93 90 90 GLU GLU B . n B 1 94 ARG 94 91 91 ARG ARG B . n B 1 95 VAL 95 92 92 VAL VAL B . n B 1 96 VAL 96 93 93 VAL VAL B . n B 1 97 SER 97 94 94 SER SER B . n B 1 98 ILE 98 95 95 ILE ILE B . n B 1 99 ALA 99 96 96 ALA ALA B . n B 1 100 TYR 100 97 97 TYR TYR B . n B 1 101 TYR 101 98 98 TYR TYR B . n B 1 102 ALA 102 99 99 ALA ALA B . n B 1 103 LEU 103 100 100 LEU LEU B . n B 1 104 ILE 104 101 101 ILE ILE B . n B 1 105 ASN 105 102 102 ASN ASN B . n B 1 106 ILE 106 103 103 ILE ILE B . n B 1 107 ASN 107 104 104 ASN ASN B . n B 1 108 GLU 108 105 105 GLU GLU B . n B 1 109 TYR 109 106 106 TYR TYR B . n B 1 110 ASP 110 107 107 ASP ASP B . n B 1 111 ARG 111 108 108 ARG ARG B . n B 1 112 GLU 112 109 109 GLU GLU B . n B 1 113 LEU 113 110 110 LEU LEU B . n B 1 114 VAL 114 111 111 VAL VAL B . n B 1 115 GLN 115 112 112 GLN GLN B . n B 1 116 LYS 116 113 113 LYS LYS B . n B 1 117 HIS 117 114 114 HIS HIS B . n B 1 118 ASN 118 115 115 ASN ASN B . n B 1 119 ALA 119 116 116 ALA ALA B . n B 1 120 TYR 120 117 117 TYR TYR B . n B 1 121 TRP 121 118 118 TRP TRP B . n B 1 122 VAL 122 119 119 VAL VAL B . n B 1 123 ASN 123 120 120 ASN ASN B . n B 1 124 ILE 124 121 121 ILE ILE B . n B 1 125 ASN 125 122 122 ASN ASN B . n B 1 126 GLU 126 123 123 GLU GLU B . n B 1 127 LEU 127 124 124 LEU LEU B . n B 1 128 PRO 128 125 125 PRO PRO B . n B 1 129 ALA 129 126 126 ALA ALA B . n B 1 130 LEU 130 127 127 LEU LEU B . n B 1 131 ILE 131 128 128 ILE ILE B . n B 1 132 PHE 132 129 129 PHE PHE B . n B 1 133 ASP 133 130 130 ASP ASP B . n B 1 134 HIS 134 131 131 HIS HIS B . n B 1 135 PRO 135 132 132 PRO PRO B . n B 1 136 GLU 136 133 133 GLU GLU B . n B 1 137 MSE 137 134 134 MSE MSE B . n B 1 138 VAL 138 135 135 VAL VAL B . n B 1 139 ASP 139 136 136 ASP ASP B . n B 1 140 LYS 140 137 137 LYS LYS B . n B 1 141 ALA 141 138 138 ALA ALA B . n B 1 142 ARG 142 139 139 ARG ARG B . n B 1 143 GLU 143 140 140 GLU GLU B . n B 1 144 MSE 144 141 141 MSE MSE B . n B 1 145 MSE 145 142 142 MSE MSE B . n B 1 146 LYS 146 143 143 LYS LYS B . n B 1 147 GLN 147 144 144 GLN GLN B . n B 1 148 LYS 148 145 145 LYS LYS B . n B 1 149 ALA 149 146 146 ALA ALA B . n B 1 150 SER 150 147 147 SER SER B . n B 1 151 VAL 151 148 148 VAL VAL B . n B 1 152 GLU 152 149 149 GLU GLU B . n B 1 153 PRO 153 150 150 PRO PRO B . n B 1 154 ILE 154 151 151 ILE ILE B . n B 1 155 GLY 155 152 152 GLY GLY B . n B 1 156 PHE 156 153 153 PHE PHE B . n B 1 157 ASN 157 154 154 ASN ASN B . n B 1 158 LEU 158 155 155 LEU LEU B . n B 1 159 LEU 159 156 156 LEU LEU B . n B 1 160 PRO 160 157 157 PRO PRO B . n B 1 161 LYS 161 158 158 LYS LYS B . n B 1 162 LEU 162 159 159 LEU LEU B . n B 1 163 PHE 163 160 160 PHE PHE B . n B 1 164 THR 164 161 161 THR THR B . n B 1 165 LEU 165 162 162 LEU LEU B . n B 1 166 SER 166 163 163 SER SER B . n B 1 167 GLN 167 164 164 GLN GLN B . n B 1 168 LEU 168 165 165 LEU LEU B . n B 1 169 GLN 169 166 166 GLN GLN B . n B 1 170 SER 170 167 167 SER SER B . n B 1 171 LEU 171 168 168 LEU LEU B . n B 1 172 TYR 172 169 169 TYR TYR B . n B 1 173 GLU 173 170 170 GLU GLU B . n B 1 174 ALA 174 171 171 ALA ALA B . n B 1 175 ILE 175 172 172 ILE ILE B . n B 1 176 TYR 176 173 173 TYR TYR B . n B 1 177 GLY 177 174 174 GLY GLY B . n B 1 178 GLU 178 175 175 GLU GLU B . n B 1 179 PRO 179 176 176 PRO PRO B . n B 1 180 MSE 180 177 177 MSE MSE B . n B 1 181 ASP 181 178 178 ASP ASP B . n B 1 182 LYS 182 179 179 LYS LYS B . n B 1 183 ARG 183 180 180 ARG ARG B . n B 1 184 ASN 184 181 181 ASN ASN B . n B 1 185 PHE 185 182 182 PHE PHE B . n B 1 186 ARG 186 183 183 ARG ARG B . n B 1 187 LYS 187 184 184 LYS LYS B . n B 1 188 ARG 188 185 185 ARG ARG B . n B 1 189 VAL 189 186 186 VAL VAL B . n B 1 190 ALA 190 187 187 ALA ALA B . n B 1 191 GLU 191 188 188 GLU GLU B . n B 1 192 MSE 192 189 189 MSE MSE B . n B 1 193 ASP 193 190 190 ASP ASP B . n B 1 194 PHE 194 191 191 PHE PHE B . n B 1 195 ILE 195 192 192 ILE ILE B . n B 1 196 GLU 196 193 193 GLU GLU B . n B 1 197 LYS 197 194 194 LYS LYS B . n B 1 198 THR 198 195 195 THR THR B . n B 1 199 ASP 199 196 196 ASP ASP B . n B 1 200 LYS 200 197 197 LYS LYS B . n B 1 201 ILE 201 198 198 ILE ILE B . n B 1 202 ASP 202 199 199 ASP ASP B . n B 1 203 LYS 203 200 200 LYS LYS B . n B 1 204 LEU 204 201 201 LEU LEU B . n B 1 205 GLY 205 202 202 GLY GLY B . n B 1 206 SER 206 203 203 SER ALA B . n B 1 207 LYS 207 204 204 LYS LYS B . n B 1 208 ARG 208 205 205 ARG ARG B . n B 1 209 GLY 209 206 206 GLY GLY B . n B 1 210 ALA 210 207 207 ALA ALA B . n B 1 211 ALA 211 208 208 ALA ALA B . n B 1 212 LEU 212 209 209 LEU LEU B . n B 1 213 TYR 213 210 210 TYR TYR B . n B 1 214 LYS 214 211 211 LYS LYS B . n B 1 215 PHE 215 212 212 PHE PHE B . n B 1 216 ASN 216 213 213 ASN ASN B . n B 1 217 GLY 217 214 214 GLY GLY B . n B 1 218 LYS 218 215 215 LYS LYS B . n B 1 219 ALA 219 216 216 ALA ALA B . n B 1 220 TYR 220 217 217 TYR TYR B . n B 1 221 ARG 221 218 218 ARG ARG B . n B 1 222 LYS 222 219 219 LYS LYS B . n B 1 223 ASP 223 220 220 ASP ASP B . n B 1 224 PRO 224 221 221 PRO PRO B . n B 1 225 LYS 225 222 222 LYS ALA B . n B 1 226 PHE 226 223 223 PHE PHE B . n B 1 227 LYS 227 224 224 LYS LYS B . n B 1 228 LEU 228 225 225 LEU LEU B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DG 9 9 9 DG DG C . n C 2 10 DT 10 10 10 DT DT C . n C 2 11 DT 11 11 11 DT DT C . n C 2 12 DA 12 12 12 DA DA C . n C 2 13 DC 13 13 13 DC DC C . n C 2 14 DT 14 14 14 DT DT C . n C 2 15 DT 15 15 15 DT DT C . n C 2 16 DT 16 16 16 DT DT C . n C 2 17 DT 17 17 17 DT DT C . n C 2 18 DA 18 18 18 DA DA C . n C 2 19 DC 19 19 19 DC DC C . n C 2 20 DA 20 20 20 DA DA C . n C 2 21 DC 21 21 21 DC DC C . n C 2 22 DC 22 22 22 DC DC C . n C 2 23 DC 23 23 23 DC DC C . n C 2 24 DA 24 24 24 DA DA C . n C 2 25 DT 25 25 25 DT DT C . n C 2 26 DG 26 26 26 DG DG C . n C 2 27 DC 27 27 27 DC DC C . n D 3 1 DG 1 1 1 DG DG D . n D 3 2 DC 2 2 2 DC DC D . n D 3 3 DA 3 3 3 DA DA D . n D 3 4 DT 4 4 4 DT DT D . n D 3 5 DG 5 5 5 DG DG D . n D 3 6 DG 6 6 6 DG DG D . n D 3 7 DG 7 7 7 DG DG D . n D 3 8 DT 8 8 8 DT DT D . n D 3 9 DG 9 9 9 DG DG D . n D 3 10 DT 10 10 10 DT DT D . n D 3 11 DA 11 11 11 DA DA D . n D 3 12 DA 12 12 12 DA DA D . n D 3 13 DA 13 13 13 DA DA D . n D 3 14 DA 14 14 14 DA DA D . n D 3 15 DG 15 15 15 DG DG D . n D 3 16 DT 16 16 16 DT DT D . n D 3 17 DA 17 17 17 DA DA D . n D 3 18 DA 18 18 18 DA DA D . n D 3 19 DC 19 19 19 DC DC D . n D 3 20 DA 20 20 20 DA DA D . n D 3 21 DC 21 21 21 DC DC D . n D 3 22 DT 22 22 22 DT DT D . n D 3 23 DT 23 23 23 DT DT D . n D 3 24 DT 24 24 24 DT DT D . n D 3 25 DT 25 25 25 DT DT D . n D 3 26 DG 26 26 26 DG DG D . n D 3 27 DC 27 27 27 DC DC D . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MLA 1 301 301 MLA MLA A . F 5 FMT 1 302 302 FMT FMT A . G 5 FMT 1 301 302 FMT FMT B . H 4 MLA 1 302 301 MLA MLA B . I 6 HOH 1 401 6 HOH HOH A . I 6 HOH 2 402 14 HOH HOH A . I 6 HOH 3 403 15 HOH HOH A . I 6 HOH 4 404 3 HOH HOH A . I 6 HOH 5 405 1 HOH HOH A . I 6 HOH 6 406 11 HOH HOH A . J 6 HOH 1 401 13 HOH HOH B . J 6 HOH 2 402 5 HOH HOH B . J 6 HOH 3 403 4 HOH HOH B . J 6 HOH 4 404 10 HOH HOH B . J 6 HOH 5 405 12 HOH HOH B . J 6 HOH 6 406 9 HOH HOH B . J 6 HOH 7 407 2 HOH HOH B . J 6 HOH 8 408 7 HOH HOH B . J 6 HOH 9 409 16 HOH HOH B . K 6 HOH 1 101 8 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET 'modified residue' 2 A MSE 43 A MSE 40 ? MET 'modified residue' 3 A MSE 49 A MSE 46 ? MET 'modified residue' 4 A MSE 78 A MSE 75 ? MET 'modified residue' 5 A MSE 137 A MSE 134 ? MET 'modified residue' 6 A MSE 144 A MSE 141 ? MET 'modified residue' 7 A MSE 145 A MSE 142 ? MET 'modified residue' 8 A MSE 180 A MSE 177 ? MET 'modified residue' 9 A MSE 192 A MSE 189 ? MET 'modified residue' 10 B MSE 43 B MSE 40 ? MET 'modified residue' 11 B MSE 49 B MSE 46 ? MET 'modified residue' 12 B MSE 78 B MSE 75 ? MET 'modified residue' 13 B MSE 137 B MSE 134 ? MET 'modified residue' 14 B MSE 144 B MSE 141 ? MET 'modified residue' 15 B MSE 145 B MSE 142 ? MET 'modified residue' 16 B MSE 180 B MSE 177 ? MET 'modified residue' 17 B MSE 192 B MSE 189 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 409 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id J _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-09 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2015-12-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? SBC-Collect ? ? ? . 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 85 ? ? -99.95 32.78 2 1 GLU A 123 ? ? -143.95 44.47 3 1 PHE A 129 ? ? 52.93 -135.44 4 1 PRO A 221 ? ? -60.26 67.85 5 1 GLU B 123 ? ? -106.14 47.55 6 1 PHE B 129 ? ? 43.68 -128.80 7 1 ASP B 220 ? ? -162.17 77.52 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 2 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS 2 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS 2 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS 2 ? NZ ? A LYS 5 NZ 5 1 Y 1 A LEU 201 ? CG ? A LEU 204 CG 6 1 Y 1 A LEU 201 ? CD1 ? A LEU 204 CD1 7 1 Y 1 A LEU 201 ? CD2 ? A LEU 204 CD2 8 1 Y 1 B ASN 3 ? CG ? B ASN 6 CG 9 1 Y 1 B ASN 3 ? OD1 ? B ASN 6 OD1 10 1 Y 1 B ASN 3 ? ND2 ? B ASN 6 ND2 11 1 Y 1 B SER 203 ? OG ? B SER 206 OG 12 1 Y 1 B LYS 222 ? CG ? B LYS 225 CG 13 1 Y 1 B LYS 222 ? CD ? B LYS 225 CD 14 1 Y 1 B LYS 222 ? CE ? B LYS 225 CE 15 1 Y 1 B LYS 222 ? NZ ? B LYS 225 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 B SER -2 ? B SER 1 4 1 Y 1 B ASN -1 ? B ASN 2 5 1 Y 1 B ALA 0 ? B ALA 3 6 1 Y 1 B MSE 1 ? B MSE 4 7 1 Y 1 B LYS 2 ? B LYS 5 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5DDG 'double helix' 5DDG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 27 1_555 0.246 -0.220 -0.177 2.958 -2.473 -1.220 1 C_DG1:DC27_D C 1 ? D 27 ? 19 1 1 C DC 2 1_555 D DG 26 1_555 0.393 -0.314 -0.138 4.366 -9.210 1.207 2 C_DC2:DG26_D C 2 ? D 26 ? 19 1 1 C DA 3 1_555 D DT 25 1_555 0.112 -0.334 0.026 -5.175 -6.961 -4.009 3 C_DA3:DT25_D C 3 ? D 25 ? 20 1 1 C DA 4 1_555 D DT 24 1_555 -0.135 -0.423 0.180 4.364 -3.711 0.963 4 C_DA4:DT24_D C 4 ? D 24 ? 20 1 1 C DA 5 1_555 D DT 23 1_555 -0.082 -0.288 0.297 10.658 -4.030 -4.149 5 C_DA5:DT23_D C 5 ? D 23 ? 20 1 1 C DA 6 1_555 D DT 22 1_555 0.180 0.002 0.292 -1.573 -7.840 7.836 6 C_DA6:DT22_D C 6 ? D 22 ? 20 1 1 C DG 7 1_555 D DC 21 1_555 0.012 -0.001 0.163 -1.878 -4.853 -0.062 7 C_DG7:DC21_D C 7 ? D 21 ? 19 1 1 C DT 8 1_555 D DA 20 1_555 0.129 -0.281 -0.009 7.309 3.715 -3.063 8 C_DT8:DA20_D C 8 ? D 20 ? 20 1 1 C DG 9 1_555 D DC 19 1_555 0.081 -0.198 -0.199 -10.393 -3.614 3.057 9 C_DG9:DC19_D C 9 ? D 19 ? 19 1 1 C DT 10 1_555 D DA 18 1_555 -0.655 -0.231 0.248 -7.638 -9.656 -5.201 10 C_DT10:DA18_D C 10 ? D 18 ? 20 1 1 C DT 11 1_555 D DA 17 1_555 -1.665 -0.107 0.152 1.132 -9.991 1.446 11 C_DT11:DA17_D C 11 ? D 17 ? 20 1 1 C DA 12 1_555 D DT 16 1_555 -0.166 -0.086 -0.123 1.074 -12.077 -2.197 12 C_DA12:DT16_D C 12 ? D 16 ? 20 1 1 C DC 13 1_555 D DG 15 1_555 0.071 -0.221 0.035 1.692 -17.150 6.585 13 C_DC13:DG15_D C 13 ? D 15 ? 19 1 1 C DT 14 1_555 D DA 14 1_555 0.164 -0.209 0.095 -1.258 -15.984 7.098 14 C_DT14:DA14_D C 14 ? D 14 ? 20 1 1 C DT 15 1_555 D DA 13 1_555 0.267 -0.373 -0.033 0.916 -15.540 6.033 15 C_DT15:DA13_D C 15 ? D 13 ? 20 1 1 C DT 16 1_555 D DA 12 1_555 0.241 0.124 0.048 -2.168 -10.221 5.362 16 C_DT16:DA12_D C 16 ? D 12 ? 20 1 1 C DT 17 1_555 D DA 11 1_555 0.151 -0.271 0.113 0.998 -9.028 0.739 17 C_DT17:DA11_D C 17 ? D 11 ? 20 1 1 C DA 18 1_555 D DT 10 1_555 -0.168 -0.307 0.183 5.873 -2.684 -2.057 18 C_DA18:DT10_D C 18 ? D 10 ? 20 1 1 C DC 19 1_555 D DG 9 1_555 0.002 -0.314 -0.364 18.975 -1.148 -3.148 19 C_DC19:DG9_D C 19 ? D 9 ? 19 1 1 C DA 20 1_555 D DT 8 1_555 0.257 -0.179 0.173 -7.172 -1.377 -4.314 20 C_DA20:DT8_D C 20 ? D 8 ? 20 1 1 C DC 21 1_555 D DG 7 1_555 0.058 -0.056 0.396 0.683 -3.661 0.428 21 C_DC21:DG7_D C 21 ? D 7 ? 19 1 1 C DC 22 1_555 D DG 6 1_555 -0.103 0.307 0.251 3.096 -11.056 11.139 22 C_DC22:DG6_D C 22 ? D 6 ? ? 1 1 C DC 23 1_555 D DG 5 1_555 0.090 -0.117 0.395 -15.466 -4.250 -1.752 23 C_DC23:DG5_D C 23 ? D 5 ? 19 1 1 C DA 24 1_555 D DT 4 1_555 0.563 -0.264 0.088 -6.279 -4.858 -1.430 24 C_DA24:DT4_D C 24 ? D 4 ? 20 1 1 C DT 25 1_555 D DA 3 1_555 -0.478 -0.276 0.067 -2.539 -10.859 -2.088 25 C_DT25:DA3_D C 25 ? D 3 ? 20 1 1 C DG 26 1_555 D DC 2 1_555 0.217 -0.079 -0.218 -0.015 -6.708 0.575 26 C_DG26:DC2_D C 26 ? D 2 ? 19 1 1 C DC 27 1_555 D DG 1 1_555 0.031 -0.355 -0.250 -1.430 -2.759 -2.285 27 C_DC27:DG1_D C 27 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 27 1_555 C DC 2 1_555 D DG 26 1_555 -0.169 0.166 3.270 -0.303 -2.493 35.486 0.634 0.232 3.253 -4.084 0.496 35.572 1 CC_DG1DC2:DG26DC27_DD C 1 ? D 27 ? C 2 ? D 26 ? 1 C DC 2 1_555 D DG 26 1_555 C DA 3 1_555 D DT 25 1_555 -0.071 1.211 3.626 -2.509 -0.832 44.066 1.698 -0.165 3.602 -1.108 3.340 44.141 2 CC_DC2DA3:DT25DG26_DD C 2 ? D 26 ? C 3 ? D 25 ? 1 C DA 3 1_555 D DT 25 1_555 C DA 4 1_555 D DT 24 1_555 0.114 0.059 3.202 -1.791 7.726 25.448 -1.858 -0.708 3.071 17.020 3.946 26.636 3 CC_DA3DA4:DT24DT25_DD C 3 ? D 25 ? C 4 ? D 24 ? 1 C DA 4 1_555 D DT 24 1_555 C DA 5 1_555 D DT 23 1_555 -0.141 -0.131 3.184 -0.837 5.880 31.538 -1.263 0.109 3.111 10.699 1.524 32.078 4 CC_DA4DA5:DT23DT24_DD C 4 ? D 24 ? C 5 ? D 23 ? 1 C DA 5 1_555 D DT 23 1_555 C DA 6 1_555 D DT 22 1_555 0.291 -0.905 3.567 1.597 -0.140 42.120 -1.243 -0.225 3.578 -0.194 -2.221 42.149 5 CC_DA5DA6:DT22DT23_DD C 5 ? D 23 ? C 6 ? D 22 ? 1 C DA 6 1_555 D DT 22 1_555 C DG 7 1_555 D DC 21 1_555 0.187 -0.619 3.300 -1.022 2.043 31.142 -1.539 -0.542 3.246 3.800 1.900 31.223 6 CC_DA6DG7:DC21DT22_DD C 6 ? D 22 ? C 7 ? D 21 ? 1 C DG 7 1_555 D DC 21 1_555 C DT 8 1_555 D DA 20 1_555 -0.587 -0.444 3.097 2.056 2.452 28.900 -1.387 1.591 3.002 4.895 -4.104 29.073 7 CC_DG7DT8:DA20DC21_DD C 7 ? D 21 ? C 8 ? D 20 ? 1 C DT 8 1_555 D DA 20 1_555 C DG 9 1_555 D DC 19 1_555 -0.257 0.148 6.959 -1.005 -1.150 28.008 0.883 0.026 6.952 -2.373 2.075 28.048 8 CC_DT8DG9:DC19DA20_DD C 8 ? D 20 ? C 9 ? D 19 ? 1 C DG 9 1_555 D DC 19 1_555 C DT 10 1_555 D DA 18 1_555 -0.854 -0.679 3.215 -3.186 2.394 23.854 -2.374 1.036 3.217 5.741 7.641 24.180 9 CC_DG9DT10:DA18DC19_DD C 9 ? D 19 ? C 10 ? D 18 ? 1 C DT 10 1_555 D DA 18 1_555 C DT 11 1_555 D DA 17 1_555 0.645 -0.491 3.057 2.151 -0.877 29.476 -0.786 -0.834 3.108 -1.721 -4.219 29.565 10 CC_DT10DT11:DA17DA18_DD C 10 ? D 18 ? C 11 ? D 17 ? 1 C DT 11 1_555 D DA 17 1_555 C DA 12 1_555 D DT 16 1_555 -0.336 0.464 3.298 0.073 2.136 45.384 0.410 0.442 3.315 2.767 -0.095 45.431 11 CC_DT11DA12:DT16DA17_DD C 11 ? D 17 ? C 12 ? D 16 ? 1 C DA 12 1_555 D DT 16 1_555 C DC 13 1_555 D DG 15 1_555 0.486 -0.382 3.256 -1.392 -3.539 35.415 -0.111 -0.997 3.256 -5.797 2.279 35.612 12 CC_DA12DC13:DG15DT16_DD C 12 ? D 16 ? C 13 ? D 15 ? 1 C DC 13 1_555 D DG 15 1_555 C DT 14 1_555 D DA 14 1_555 -0.126 -0.050 3.402 0.528 -1.793 37.207 0.169 0.270 3.399 -2.808 -0.827 37.252 13 CC_DC13DT14:DA14DG15_DD C 13 ? D 15 ? C 14 ? D 14 ? 1 C DT 14 1_555 D DA 14 1_555 C DT 15 1_555 D DA 13 1_555 0.021 0.061 3.276 0.728 -5.306 36.392 0.819 0.066 3.236 -8.439 -1.158 36.770 14 CC_DT14DT15:DA13DA14_DD C 14 ? D 14 ? C 15 ? D 13 ? 1 C DT 15 1_555 D DA 13 1_555 C DT 16 1_555 D DA 12 1_555 0.153 -0.423 3.296 1.113 0.119 34.407 -0.733 -0.083 3.298 0.201 -1.880 34.424 15 CC_DT15DT16:DA12DA13_DD C 15 ? D 13 ? C 16 ? D 12 ? 1 C DT 16 1_555 D DA 12 1_555 C DT 17 1_555 D DA 11 1_555 0.272 0.034 3.266 0.161 -1.328 35.221 0.252 -0.425 3.263 -2.194 -0.266 35.246 16 CC_DT16DT17:DA11DA12_DD C 16 ? D 12 ? C 17 ? D 11 ? 1 C DT 17 1_555 D DA 11 1_555 C DA 18 1_555 D DT 10 1_555 -0.112 0.115 3.202 -0.608 1.899 33.944 -0.100 0.096 3.205 3.249 1.040 34.001 17 CC_DT17DA18:DT10DA11_DD C 17 ? D 11 ? C 18 ? D 10 ? 1 C DA 18 1_555 D DT 10 1_555 C DC 19 1_555 D DG 9 1_555 0.393 -0.449 2.939 4.786 5.879 26.410 -2.243 0.226 2.802 12.544 -10.210 27.458 18 CC_DA18DC19:DG9DT10_DD C 18 ? D 10 ? C 19 ? D 9 ? 1 C DC 19 1_555 D DG 9 1_555 C DA 20 1_555 D DT 8 1_555 0.443 0.258 7.221 -1.760 -4.802 28.445 2.861 -1.746 7.043 -9.673 3.545 28.892 19 CC_DC19DA20:DT8DG9_DD C 19 ? D 9 ? C 20 ? D 8 ? 1 C DA 20 1_555 D DT 8 1_555 C DC 21 1_555 D DG 7 1_555 0.568 -0.791 3.120 -1.421 2.618 29.512 -2.063 -1.390 3.010 5.122 2.780 29.659 20 CC_DA20DC21:DG7DT8_DD C 20 ? D 8 ? C 21 ? D 7 ? 1 C DC 21 1_555 D DG 7 1_555 C DC 22 1_555 D DG 6 1_555 -0.109 -0.450 3.162 4.484 2.776 30.659 -1.348 1.026 3.064 5.202 -8.402 31.099 21 CC_DC21DC22:DG6DG7_DD C 21 ? D 7 ? C 22 ? D 6 ? 1 C DC 22 1_555 D DG 6 1_555 C DC 23 1_555 D DG 5 1_555 -0.392 -0.788 3.719 -3.674 0.603 42.430 -1.154 0.118 3.728 0.832 5.065 42.586 22 CC_DC22DC23:DG5DG6_DD C 22 ? D 6 ? C 23 ? D 5 ? 1 C DC 23 1_555 D DG 5 1_555 C DA 24 1_555 D DT 4 1_555 -0.554 0.668 3.245 -0.680 3.508 33.533 0.580 0.844 3.306 6.059 1.174 33.717 23 CC_DC23DA24:DT4DG5_DD C 23 ? D 5 ? C 24 ? D 4 ? 1 C DA 24 1_555 D DT 4 1_555 C DT 25 1_555 D DA 3 1_555 0.214 -0.648 3.282 0.591 2.132 25.426 -2.073 -0.317 3.222 4.833 -1.339 25.520 24 CC_DA24DT25:DA3DT4_DD C 24 ? D 4 ? C 25 ? D 3 ? 1 C DT 25 1_555 D DA 3 1_555 C DG 26 1_555 D DC 2 1_555 0.198 1.094 3.377 4.040 -0.448 43.425 1.518 0.135 3.371 -0.604 -5.445 43.605 25 CC_DT25DG26:DC2DA3_DD C 25 ? D 3 ? C 26 ? D 2 ? 1 C DG 26 1_555 D DC 2 1_555 C DC 27 1_555 D DG 1 1_555 0.083 -0.080 3.321 0.660 -0.673 32.004 -0.021 -0.030 3.323 -1.221 -1.196 32.017 26 CC_DG26DC27:DG1DC2_DD C 26 ? D 2 ? C 27 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MALONIC ACID' MLA 5 'FORMIC ACID' FMT 6 water HOH #