HEADER RNA BINDING PROTEIN/RNA 25-AUG-15 5DE5 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G- TITLE 2 QUADRUPLEX RNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SC1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FRAGILE X MENTAL RETARDATION PROTEIN 1; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: PROTEIN FMR-1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS FRAGILE X SYNDROME, RNA STRUCTURE, RGG BOX, FMRP, G-QUADRUPLEX, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL,A.SERGANOV REVDAT 6 06-MAR-24 5DE5 1 LINK REVDAT 5 27-NOV-19 5DE5 1 REMARK REVDAT 4 06-SEP-17 5DE5 1 JRNL REMARK REVDAT 3 14-OCT-15 5DE5 1 JRNL REVDAT 2 30-SEP-15 5DE5 1 JRNL REVDAT 1 23-SEP-15 5DE5 0 JRNL AUTH N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL, JRNL AUTH 2 A.SERGANOV JRNL TITL CRYSTAL STRUCTURE REVEALS SPECIFIC RECOGNITION OF A JRNL TITL 2 G-QUADRUPLEX RNA BY A BETA-TURN IN THE RGG MOTIF OF FMRP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E5391 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26374839 JRNL DOI 10.1073/PNAS.1515737112 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 5841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.540 REMARK 3 FREE R VALUE TEST SET COUNT : 265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2183 - 3.7764 1.00 2870 130 0.1706 0.1835 REMARK 3 2 3.7764 - 3.0011 0.99 2706 135 0.2336 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1862 REMARK 3 ANGLE : 0.846 2861 REMARK 3 CHIRALITY : 0.040 360 REMARK 3 PLANARITY : 0.004 103 REMARK 3 DIHEDRAL : 15.944 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8121 18.5850 -5.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.3253 REMARK 3 T33: 0.2955 T12: -0.0182 REMARK 3 T13: 0.0150 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.3758 L22: 2.0633 REMARK 3 L33: 0.4579 L12: 0.4753 REMARK 3 L13: -0.0337 L23: 0.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.2673 S12: -0.2110 S13: 0.0641 REMARK 3 S21: 0.2930 S22: -0.3151 S23: -0.0072 REMARK 3 S31: 0.1946 S32: 0.1056 S33: 0.1193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5430 32.0175 -9.2364 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2415 REMARK 3 T33: 0.2931 T12: -0.0588 REMARK 3 T13: -0.0129 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 4.8454 L22: 4.1190 REMARK 3 L33: 2.8041 L12: -0.1653 REMARK 3 L13: -0.1313 L23: -0.8026 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.3260 S13: 0.2805 REMARK 3 S21: -0.3583 S22: -0.1919 S23: 0.2831 REMARK 3 S31: -0.3960 S32: 0.0935 S33: 0.1444 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8586 13.9185 -7.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.3035 REMARK 3 T33: 0.5880 T12: 0.0412 REMARK 3 T13: 0.1215 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 0.5349 L22: 1.4597 REMARK 3 L33: 0.1330 L12: 0.8826 REMARK 3 L13: -0.1207 L23: -0.2180 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: -0.1360 S13: -0.3575 REMARK 3 S21: 0.2733 S22: -0.1447 S23: -0.4852 REMARK 3 S31: 0.4414 S32: 0.2640 S33: 0.0985 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5980 16.3502 -11.7177 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2056 REMARK 3 T33: 0.3289 T12: -0.0006 REMARK 3 T13: 0.0066 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 5.1474 L22: 2.7150 REMARK 3 L33: 3.3788 L12: 0.0347 REMARK 3 L13: 0.7133 L23: -1.0232 REMARK 3 S TENSOR REMARK 3 S11: 0.1610 S12: 0.2033 S13: -0.2334 REMARK 3 S21: -0.1579 S22: -0.1089 S23: 0.2318 REMARK 3 S31: -0.0550 S32: -0.0021 S33: 0.0160 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8120 -16.5534 -23.1406 REMARK 3 T TENSOR REMARK 3 T11: 0.4994 T22: 0.1809 REMARK 3 T33: 0.2384 T12: -0.0318 REMARK 3 T13: 0.0900 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 0.2974 L22: 1.1384 REMARK 3 L33: 0.7747 L12: -0.4741 REMARK 3 L13: 0.2781 L23: -0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.2127 S12: 0.0955 S13: 0.0656 REMARK 3 S21: -0.0951 S22: -0.3258 S23: -0.3785 REMARK 3 S31: 0.5058 S32: 0.0516 S33: -0.5656 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 22 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5910 -19.0790 -13.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.9653 T22: 0.3933 REMARK 3 T33: 0.5291 T12: -0.0014 REMARK 3 T13: -0.3708 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 5.2428 L22: 0.1258 REMARK 3 L33: 1.4766 L12: -0.2345 REMARK 3 L13: -2.2312 L23: 0.3462 REMARK 3 S TENSOR REMARK 3 S11: 0.2045 S12: -0.8629 S13: -0.4152 REMARK 3 S21: 1.0579 S22: -0.0414 S23: -0.5253 REMARK 3 S31: 0.7191 S32: 0.3529 S33: -0.3173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 29 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7432 -3.1187 -22.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.4393 T22: 0.2318 REMARK 3 T33: 0.7130 T12: 0.0366 REMARK 3 T13: -0.0090 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 0.3998 L22: 0.0819 REMARK 3 L33: 0.6540 L12: -0.1174 REMARK 3 L13: -0.3944 L23: 0.2263 REMARK 3 S TENSOR REMARK 3 S11: 0.1359 S12: 0.1188 S13: 0.0894 REMARK 3 S21: -0.0104 S22: -0.1487 S23: -0.1524 REMARK 3 S31: -0.1871 S32: -0.0106 S33: -0.0560 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8479 -7.7343 -15.0129 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.3475 REMARK 3 T33: 0.2146 T12: 0.0511 REMARK 3 T13: -0.0004 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.6393 L22: 2.9071 REMARK 3 L33: 0.4767 L12: 0.4698 REMARK 3 L13: -0.7709 L23: -0.9802 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: -0.3362 S13: 0.2694 REMARK 3 S21: 0.6986 S22: 0.0162 S23: -0.2248 REMARK 3 S31: -0.1420 S32: 0.0557 S33: -0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1053 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10504 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.01100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-CITRATE PH 5.6, 0.2 M REMARK 280 AMMONIUM ACETATE, 18% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.53000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ALA D 3 REMARK 465 ARG D 4 REMARK 465 GLY D 5 REMARK 465 GLY D 19 REMARK 465 ARG D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 ARG D 9 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 28 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 6 48.20 -94.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 6 O6 REMARK 620 2 G A 9 O6 77.5 REMARK 620 3 G A 12 O6 102.0 67.4 REMARK 620 4 G A 16 O6 59.4 110.6 71.7 REMARK 620 5 G A 18 O6 75.2 111.0 177.1 107.1 REMARK 620 6 G A 21 O6 106.2 169.4 102.0 64.7 79.6 REMARK 620 7 G A 25 O6 167.3 108.9 71.7 108.0 111.2 65.5 REMARK 620 8 G A 26 O6 124.0 71.4 107.1 176.6 74.2 112.8 68.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 8 O4 REMARK 620 2 G A 9 O6 68.2 REMARK 620 3 G A 18 O6 134.6 101.9 REMARK 620 4 G A 26 O6 132.4 66.0 68.6 REMARK 620 5 G A 29 O6 71.8 71.4 149.7 82.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 12 O6 70.2 REMARK 620 3 G A 15 O6 77.9 89.1 REMARK 620 4 G A 16 O6 132.2 81.2 63.8 REMARK 620 5 G A 20 O6 113.6 160.1 73.3 82.7 REMARK 620 6 G A 21 O6 157.1 117.0 122.3 70.4 67.8 REMARK 620 7 G A 24 O6 76.8 123.8 126.9 149.6 75.4 81.8 REMARK 620 8 G A 25 O6 93.2 77.8 166.1 117.6 120.4 68.8 59.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 6 O6 REMARK 620 2 G C 9 O6 82.4 REMARK 620 3 G C 12 O6 101.3 68.4 REMARK 620 4 G C 16 O6 60.1 116.7 71.5 REMARK 620 5 G C 18 O6 71.0 107.3 171.9 105.6 REMARK 620 6 G C 21 O6 108.7 168.9 107.9 70.2 77.6 REMARK 620 7 G C 25 O6 164.0 93.4 62.9 109.2 124.9 75.7 REMARK 620 8 G C 26 O6 125.4 64.1 104.1 174.0 79.3 108.1 64.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 6 O6 REMARK 620 2 U C 8 O4 89.4 REMARK 620 3 G C 9 O6 68.6 76.1 REMARK 620 4 G C 18 O6 59.1 147.6 97.0 REMARK 620 5 G C 29 O6 136.9 72.0 69.2 135.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 6 O3' REMARK 620 2 G C 6 O2' 48.5 REMARK 620 3 HOH C 201 O 126.9 118.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 12 O6 60.4 REMARK 620 3 G C 15 O6 75.6 88.6 REMARK 620 4 G C 16 O6 119.7 78.0 60.8 REMARK 620 5 G C 20 O6 110.6 155.4 66.8 89.2 REMARK 620 6 G C 21 O6 158.6 116.9 125.7 77.8 80.0 REMARK 620 7 G C 24 O6 79.0 119.6 124.1 160.3 77.3 85.6 REMARK 620 8 G C 25 O6 84.5 62.6 150.6 114.1 141.9 76.4 71.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 104 DBREF 5DE5 A 1 35 PDB 5DE5 5DE5 1 35 DBREF 5DE5 B 3 20 UNP Q06787 FMR1_HUMAN 527 544 DBREF 5DE5 C 1 35 PDB 5DE5 5DE5 1 35 DBREF 5DE5 D 3 20 UNP Q06787 FMR1_HUMAN 527 544 SEQADV 5DE5 ALA B 3 UNP Q06787 ARG 527 CONFLICT SEQADV 5DE5 ALA D 3 UNP Q06787 ARG 527 CONFLICT SEQRES 1 A 35 G C U G C G G U G U G G A SEQRES 2 A 35 A G G A G U G G C U G G G SEQRES 3 A 35 U U G C G C A G C SEQRES 1 B 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 B 18 GLY GLN GLY GLY ARG SEQRES 1 C 35 G C U G C G G U G U G G A SEQRES 2 C 35 A G G A G U G G C U G G G SEQRES 3 C 35 U U G C G C A G C SEQRES 1 D 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 D 18 GLY GLN GLY GLY ARG HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K C 101 1 HET K C 102 1 HET K C 103 1 HET K C 104 1 HETNAM K POTASSIUM ION FORMUL 5 K 7(K 1+) FORMUL 12 HOH *4(H2 O) LINK O6 G A 6 K K A 102 1555 1555 2.68 LINK O4 U A 8 K K A 101 1555 1555 3.36 LINK O6 G A 9 K K A 101 1555 1555 3.02 LINK O6 G A 9 K K A 102 1555 1555 2.84 LINK O6 G A 11 K K A 103 1555 1555 2.72 LINK O6 G A 12 K K A 102 1555 1555 2.99 LINK O6 G A 12 K K A 103 1555 1555 2.64 LINK O6 G A 15 K K A 103 1555 1555 2.66 LINK O6 G A 16 K K A 102 1555 1555 3.03 LINK O6 G A 16 K K A 103 1555 1555 2.77 LINK O6 G A 18 K K A 101 1555 1555 2.99 LINK O6 G A 18 K K A 102 1555 1555 2.82 LINK O6 G A 20 K K A 103 1555 1555 2.67 LINK O6 G A 21 K K A 102 1555 1555 2.95 LINK O6 G A 21 K K A 103 1555 1555 2.78 LINK O6 G A 24 K K A 103 1555 1555 2.73 LINK O6 G A 25 K K A 102 1555 1555 3.15 LINK O6 G A 25 K K A 103 1555 1555 3.07 LINK O6 G A 26 K K A 101 1555 1555 2.99 LINK O6 G A 26 K K A 102 1555 1555 2.77 LINK O6 G A 29 K K A 101 1555 1555 2.85 LINK O6 G C 6 K K C 102 1555 1555 2.69 LINK O6 G C 6 K K C 103 1555 1555 3.41 LINK O3' G C 6 K K C 104 1555 1555 3.37 LINK O2' G C 6 K K C 104 1555 1555 3.43 LINK O4 U C 8 K K C 103 1555 1555 2.90 LINK O6 G C 9 K K C 102 1555 1555 2.92 LINK O6 G C 9 K K C 103 1555 1555 3.15 LINK O6 G C 11 K K C 101 1555 1555 2.82 LINK O6 G C 12 K K C 101 1555 1555 2.83 LINK O6 G C 12 K K C 102 1555 1555 2.94 LINK O6 G C 15 K K C 101 1555 1555 2.83 LINK O6 G C 16 K K C 101 1555 1555 2.78 LINK O6 G C 16 K K C 102 1555 1555 3.10 LINK O6 G C 18 K K C 102 1555 1555 2.76 LINK O6 G C 18 K K C 103 1555 1555 2.96 LINK O6 G C 20 K K C 101 1555 1555 2.60 LINK O6 G C 21 K K C 101 1555 1555 2.77 LINK O6 G C 21 K K C 102 1555 1555 2.96 LINK O6 G C 24 K K C 101 1555 1555 2.68 LINK O6 G C 25 K K C 101 1555 1555 2.86 LINK O6 G C 25 K K C 102 1555 1555 2.70 LINK O6 G C 26 K K C 102 1555 1555 2.97 LINK O6 G C 29 K K C 103 1555 1555 2.95 LINK K K C 104 O HOH C 201 1555 1555 3.34 SITE 1 AC1 8 G A 6 U A 8 G A 9 A A 17 SITE 2 AC1 8 G A 18 G A 26 G A 29 K A 102 SITE 1 AC2 10 G A 6 G A 9 G A 12 G A 16 SITE 2 AC2 10 G A 18 G A 21 G A 25 G A 26 SITE 3 AC2 10 K A 101 K A 103 SITE 1 AC3 9 G A 11 G A 12 G A 15 G A 16 SITE 2 AC3 9 G A 20 G A 21 G A 24 G A 25 SITE 3 AC3 9 K A 102 SITE 1 AC4 9 G C 11 G C 12 G C 15 G C 16 SITE 2 AC4 9 G C 20 G C 21 G C 24 G C 25 SITE 3 AC4 9 K C 102 SITE 1 AC5 10 G C 6 G C 9 G C 12 G C 16 SITE 2 AC5 10 G C 18 G C 21 G C 25 G C 26 SITE 3 AC5 10 K C 101 K C 103 SITE 1 AC6 8 G C 6 U C 8 G C 9 A C 17 SITE 2 AC6 8 G C 18 G C 26 G C 29 K C 102 SITE 1 AC7 2 G C 6 G C 7 CRYST1 57.060 130.010 36.750 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027211 0.00000