HEADER RNA BINDING PROTEIN/RNA 25-AUG-15 5DE8 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G- TITLE 2 QUADRUPLEX RNA, IRIDIUM HEXAMMINE BOUND FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SC1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FRAGILE X MENTAL RETARDATION PROTEIN 1; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: PROTEIN FMR-1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS FRAGILE X SYNDROME, RNA STRUCTURE, RGG BOX, FMRP, G-QUADRUPLEX, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL,A.SERGANOV REVDAT 6 06-MAR-24 5DE8 1 REMARK REVDAT 5 27-NOV-19 5DE8 1 REMARK REVDAT 4 06-SEP-17 5DE8 1 JRNL REMARK REVDAT 3 14-OCT-15 5DE8 1 JRNL REVDAT 2 30-SEP-15 5DE8 1 JRNL REVDAT 1 23-SEP-15 5DE8 0 JRNL AUTH N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL, JRNL AUTH 2 A.SERGANOV JRNL TITL CRYSTAL STRUCTURE REVEALS SPECIFIC RECOGNITION OF A JRNL TITL 2 G-QUADRUPLEX RNA BY A BETA-TURN IN THE RGG MOTIF OF FMRP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E5391 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26374839 JRNL DOI 10.1073/PNAS.1515737112 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 5334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3558 - 3.9008 1.00 2654 112 0.1730 0.1713 REMARK 3 2 3.9008 - 3.1003 0.98 2437 131 0.2423 0.3000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1898 REMARK 3 ANGLE : 1.217 2943 REMARK 3 CHIRALITY : 0.058 360 REMARK 3 PLANARITY : 0.006 104 REMARK 3 DIHEDRAL : 18.709 896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3668 38.8447 13.1761 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.2723 REMARK 3 T33: 0.3933 T12: -0.0165 REMARK 3 T13: -0.0591 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.5757 L22: 0.6787 REMARK 3 L33: 1.7809 L12: 0.1602 REMARK 3 L13: -0.0205 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: -0.2115 S13: -0.3011 REMARK 3 S21: 0.1180 S22: -0.0619 S23: 0.2140 REMARK 3 S31: -0.1860 S32: -0.4444 S33: 0.4027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0495 34.6650 1.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.3229 T22: 0.3754 REMARK 3 T33: 0.2877 T12: -0.1418 REMARK 3 T13: 0.1020 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 3.9012 L22: 3.7887 REMARK 3 L33: 1.4082 L12: -0.2865 REMARK 3 L13: 1.0116 L23: -1.9621 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.8046 S13: 0.2462 REMARK 3 S21: -1.1424 S22: 0.0650 S23: -0.7247 REMARK 3 S31: 0.2475 S32: 0.1700 S33: 0.1800 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9132 51.7617 11.0398 REMARK 3 T TENSOR REMARK 3 T11: 0.4799 T22: 0.3269 REMARK 3 T33: 0.5340 T12: 0.1929 REMARK 3 T13: 0.0293 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 3.3763 L22: 3.3019 REMARK 3 L33: 2.6532 L12: 3.1341 REMARK 3 L13: -1.0551 L23: -1.9291 REMARK 3 S TENSOR REMARK 3 S11: 0.2992 S12: -0.2284 S13: 0.7038 REMARK 3 S21: 0.6258 S22: -0.2052 S23: 1.2212 REMARK 3 S31: -1.1212 S32: -0.4787 S33: -0.1161 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3434 49.1259 6.3682 REMARK 3 T TENSOR REMARK 3 T11: 0.4481 T22: 0.0935 REMARK 3 T33: 0.2824 T12: -0.0238 REMARK 3 T13: 0.0131 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.6932 L22: 3.2699 REMARK 3 L33: 0.5201 L12: 0.2520 REMARK 3 L13: -0.3609 L23: -0.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.3973 S13: 0.4536 REMARK 3 S21: -0.6689 S22: 0.1804 S23: -0.0591 REMARK 3 S31: -0.4505 S32: -0.0746 S33: 0.1088 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3295 74.8369 -3.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.7484 T22: 0.1427 REMARK 3 T33: 0.2956 T12: 0.0142 REMARK 3 T13: 0.0245 T23: -0.1873 REMARK 3 L TENSOR REMARK 3 L11: 0.5977 L22: 1.0296 REMARK 3 L33: 0.3238 L12: 0.7556 REMARK 3 L13: -0.4334 L23: -0.5444 REMARK 3 S TENSOR REMARK 3 S11: -0.1766 S12: -0.0273 S13: -0.2071 REMARK 3 S21: 0.4211 S22: -0.3276 S23: -0.0452 REMARK 3 S31: 0.0292 S32: -0.0091 S33: -0.7772 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3289 87.6409 -5.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.9832 T22: 0.0850 REMARK 3 T33: 0.2481 T12: -0.0053 REMARK 3 T13: -0.0801 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.2000 L22: 4.1429 REMARK 3 L33: 1.6795 L12: -0.7200 REMARK 3 L13: -1.7232 L23: -0.5812 REMARK 3 S TENSOR REMARK 3 S11: 0.3102 S12: -0.0069 S13: -0.2832 REMARK 3 S21: -0.1459 S22: -0.5107 S23: 0.5695 REMARK 3 S31: -0.2137 S32: 0.1009 S33: -0.4658 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 22 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3003 86.1316 3.6512 REMARK 3 T TENSOR REMARK 3 T11: 1.0173 T22: 0.4397 REMARK 3 T33: 0.6761 T12: 0.1178 REMARK 3 T13: 0.3460 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 5.1608 L22: 0.1777 REMARK 3 L33: 0.4029 L12: 0.2221 REMARK 3 L13: 1.4071 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: -0.8272 S13: 0.4397 REMARK 3 S21: 0.8363 S22: -0.1730 S23: 0.8184 REMARK 3 S31: 0.1786 S32: -0.2838 S33: 0.3424 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 27 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9202 71.4636 -2.0908 REMARK 3 T TENSOR REMARK 3 T11: 0.9205 T22: 0.2357 REMARK 3 T33: 0.4621 T12: 0.1542 REMARK 3 T13: 0.0661 T23: -0.1200 REMARK 3 L TENSOR REMARK 3 L11: 1.6568 L22: 2.3234 REMARK 3 L33: 0.7483 L12: -0.6262 REMARK 3 L13: 0.5202 L23: 0.3771 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: -0.0364 S13: -0.4446 REMARK 3 S21: 0.5284 S22: -0.2381 S23: 0.8095 REMARK 3 S31: -0.2547 S32: -0.0683 S33: 0.1031 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8276 73.2559 3.4173 REMARK 3 T TENSOR REMARK 3 T11: 0.8078 T22: 0.2805 REMARK 3 T33: 0.3762 T12: 0.0201 REMARK 3 T13: 0.0430 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 2.3079 L22: 4.8958 REMARK 3 L33: 0.9446 L12: -0.2390 REMARK 3 L13: 1.2795 L23: -1.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.3589 S12: -0.1255 S13: -0.4864 REMARK 3 S21: 0.5152 S22: -0.1288 S23: 0.4931 REMARK 3 S31: -0.2505 S32: -0.2701 S33: -0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10528 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9586 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.2 M REMARK 280 AMMONIUM ACETATE, 18% PEG 4000. INCUBATED WITH 10 MM IRIDIUM REMARK 280 HEXAMMINE FOR HEAVY ATOM DERIVATION., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.82500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ALA D 3 REMARK 465 ARG D 4 REMARK 465 GLY D 5 REMARK 465 ARG D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 ARG B 9 NE CZ NH1 NH2 REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 ARG D 9 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' U C 3 O3' C C 35 2565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 10 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 U A 28 O3' - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 C C 30 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 10 119.45 -169.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 12 O6 73.2 REMARK 620 3 G A 15 O6 85.1 91.3 REMARK 620 4 G A 16 O6 135.5 83.0 57.9 REMARK 620 5 G A 20 O6 118.6 149.7 64.0 69.3 REMARK 620 6 G A 21 O6 163.7 119.7 103.6 59.6 56.1 REMARK 620 7 G A 24 O6 82.4 133.9 125.4 137.9 76.4 81.3 REMARK 620 8 G A 25 O6 106.2 81.4 163.8 106.6 117.5 68.5 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 12 O6 63.7 REMARK 620 3 G C 15 O6 90.8 102.4 REMARK 620 4 G C 16 O6 124.0 72.7 65.5 REMARK 620 5 G C 20 O6 124.0 164.6 65.9 92.8 REMARK 620 6 G C 21 O6 154.0 109.9 115.1 72.7 69.2 REMARK 620 7 G C 24 O6 84.6 122.7 125.7 150.8 72.5 78.5 REMARK 620 8 G C 25 O6 83.1 65.5 167.9 109.5 126.2 71.9 64.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IRI A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IRI A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IRI A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IRI C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IRI C 103 DBREF 5DE8 A 1 35 PDB 5DE8 5DE8 1 35 DBREF 5DE8 B 3 20 UNP Q06787 FMR1_HUMAN 527 544 DBREF 5DE8 C 1 35 PDB 5DE8 5DE8 1 35 DBREF 5DE8 D 3 20 UNP Q06787 FMR1_HUMAN 527 544 SEQADV 5DE8 ALA B 3 UNP Q06787 ARG 527 CONFLICT SEQADV 5DE8 ALA D 3 UNP Q06787 ARG 527 CONFLICT SEQRES 1 A 35 G C U G C G G U G U G G A SEQRES 2 A 35 A G G A G U G G C U G G G SEQRES 3 A 35 U U G C G C A G C SEQRES 1 B 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 B 18 GLY GLN GLY GLY ARG SEQRES 1 C 35 G C U G C G G U G U G G A SEQRES 2 C 35 A G G A G U G G C U G G G SEQRES 3 C 35 U U G C G C A G C SEQRES 1 D 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 D 18 GLY GLN GLY GLY ARG HET K A 101 1 HET IRI A 102 7 HET IRI A 103 7 HET IRI A 104 7 HET K C 101 1 HET IRI C 102 7 HET IRI C 103 7 HETNAM K POTASSIUM ION HETNAM IRI IRIDIUM HEXAMMINE ION FORMUL 5 K 2(K 1+) FORMUL 6 IRI 5(H18 IR N6 3+) LINK O6 G A 11 K K A 101 1555 1555 2.68 LINK O6 G A 12 K K A 101 1555 1555 2.46 LINK O6 G A 15 K K A 101 1555 1555 2.57 LINK O6 G A 16 K K A 101 1555 1555 3.02 LINK O6 G A 20 K K A 101 1555 1555 2.94 LINK O6 G A 21 K K A 101 1555 1555 3.23 LINK O6 G A 24 K K A 101 1555 1555 2.47 LINK O6 G A 25 K K A 101 1555 1555 2.75 LINK O6 G C 11 K K C 101 1555 1555 2.70 LINK O6 G C 12 K K C 101 1555 1555 2.80 LINK O6 G C 15 K K C 101 1555 1555 2.66 LINK O6 G C 16 K K C 101 1555 1555 2.67 LINK O6 G C 20 K K C 101 1555 1555 2.58 LINK O6 G C 21 K K C 101 1555 1555 2.98 LINK O6 G C 24 K K C 101 1555 1555 2.91 LINK O6 G C 25 K K C 101 1555 1555 3.20 SITE 1 AC1 8 G A 11 G A 12 G A 15 G A 16 SITE 2 AC1 8 G A 20 G A 21 G A 24 G A 25 SITE 1 AC2 4 U A 8 G A 9 A A 13 U A 19 SITE 1 AC3 8 G A 21 C A 22 G A 24 G A 25 SITE 2 AC3 8 G A 26 U A 27 U A 28 IRI A 104 SITE 1 AC4 4 G A 24 G A 25 U A 27 IRI A 103 SITE 1 AC5 8 G C 11 G C 12 G C 15 G C 16 SITE 2 AC5 8 G C 20 G C 21 G C 24 G C 25 SITE 1 AC6 3 U C 8 G C 9 A C 13 SITE 1 AC7 4 G C 6 G C 7 G C 15 G C 16 CRYST1 57.650 130.600 36.700 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027248 0.00000