HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-AUG-15 5DEW TITLE CRYSTAL STRUCTURE OF PAK1 IN COMPLEX WITH AN INHIBITOR COMPOUND 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUE 249-545; COMPND 5 SYNONYM: ALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,C.TAM,W.WANG REVDAT 2 06-MAR-24 5DEW 1 REMARK REVDAT 1 21-SEP-16 5DEW 0 JRNL AUTH C.O.NDUBAKU JRNL TITL DESIGN OF SELECTIVE PAK1 INHIBITOR G-5555: IMPROVING JRNL TITL 2 PROPER-TIES BY EMPLOYING AN UNORTHODOX LOW-PKA POLAR MOIETY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 50952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2470 - 5.0291 1.00 2649 132 0.1547 0.2016 REMARK 3 2 5.0291 - 3.9923 1.00 2567 147 0.1385 0.1692 REMARK 3 3 3.9923 - 3.4878 1.00 2574 141 0.1611 0.1950 REMARK 3 4 3.4878 - 3.1690 1.00 2597 123 0.1814 0.2383 REMARK 3 5 3.1690 - 2.9419 1.00 2575 154 0.1913 0.2442 REMARK 3 6 2.9419 - 2.7685 1.00 2536 145 0.1895 0.2104 REMARK 3 7 2.7685 - 2.6298 1.00 2558 150 0.1844 0.2162 REMARK 3 8 2.6298 - 2.5154 1.00 2590 128 0.1824 0.2429 REMARK 3 9 2.5154 - 2.4185 1.00 2568 128 0.1840 0.2539 REMARK 3 10 2.4185 - 2.3351 1.00 2549 144 0.1715 0.2323 REMARK 3 11 2.3351 - 2.2621 1.00 2563 132 0.1781 0.2019 REMARK 3 12 2.2621 - 2.1974 1.00 2531 151 0.1824 0.2232 REMARK 3 13 2.1974 - 2.1396 1.00 2560 143 0.1765 0.2111 REMARK 3 14 2.1396 - 2.0874 1.00 2546 122 0.1887 0.2300 REMARK 3 15 2.0874 - 2.0399 1.00 2572 140 0.1965 0.2249 REMARK 3 16 2.0399 - 1.9965 1.00 2576 129 0.2094 0.2326 REMARK 3 17 1.9965 - 1.9566 1.00 2542 125 0.2209 0.2305 REMARK 3 18 1.9566 - 1.9196 1.00 2556 135 0.2292 0.2610 REMARK 3 19 1.9196 - 1.8854 0.85 2153 121 0.2611 0.3292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4648 REMARK 3 ANGLE : 1.144 6291 REMARK 3 CHIRALITY : 0.044 714 REMARK 3 PLANARITY : 0.005 807 REMARK 3 DIHEDRAL : 13.843 1751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 250:346 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3941 -21.6098 6.9482 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.3192 REMARK 3 T33: 0.2019 T12: 0.0928 REMARK 3 T13: 0.0356 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5961 L22: 0.4901 REMARK 3 L33: 0.3987 L12: -0.0890 REMARK 3 L13: -0.1794 L23: 0.0458 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.2501 S13: -0.0620 REMARK 3 S21: -0.1001 S22: 0.0044 S23: -0.0066 REMARK 3 S31: 0.0310 S32: -0.2193 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 347:541 OR CHAIN A AND RESID 601 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1990 0.2585 21.2673 REMARK 3 T TENSOR REMARK 3 T11: 0.1055 T22: 0.1549 REMARK 3 T33: 0.0977 T12: 0.0051 REMARK 3 T13: -0.0195 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.5765 L22: 0.6692 REMARK 3 L33: 2.3284 L12: -0.2663 REMARK 3 L13: -0.5174 L23: 0.2759 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0288 S13: -0.0362 REMARK 3 S21: -0.0520 S22: -0.0301 S23: -0.0063 REMARK 3 S31: -0.1275 S32: 0.3652 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 255:346 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3899 -15.1196 -15.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.1787 REMARK 3 T33: 0.3189 T12: -0.0579 REMARK 3 T13: 0.0778 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1729 L22: 0.4250 REMARK 3 L33: 0.3263 L12: 0.2579 REMARK 3 L13: 0.0649 L23: 0.2557 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.0034 S13: 0.0537 REMARK 3 S21: 0.3405 S22: -0.0088 S23: 0.3487 REMARK 3 S31: 0.2181 S32: -0.1310 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 347:541 OR CHAIN B AND RESID 601 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9190 5.7117 -17.1409 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1183 REMARK 3 T33: 0.1631 T12: 0.0206 REMARK 3 T13: 0.0015 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.7221 L22: 0.2942 REMARK 3 L33: 0.9883 L12: 0.2197 REMARK 3 L13: -0.1400 L23: -0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.0736 S13: 0.0331 REMARK 3 S21: 0.1148 S22: 0.0190 S23: 0.0782 REMARK 3 S31: 0.0202 S32: -0.0161 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN AT 19 C FROM 1.0 REMARK 280 UL + 1.0 UL VAPOR DIFFUSION DROPS CONTAINING 10 MG/ML PROTEIN, 1 REMARK 280 MM LIGAND, 0.15 M DL-MALIC ACID PH 7.0, 20% - 30% PEG 3350, 4% 1, REMARK 280 3-PROPANEDIOL AND 0.1 M SODIUM MALONATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.52650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 249 REMARK 465 HIS A 545 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 ILE B 253 REMARK 465 LEU B 254 REMARK 465 CYS B 411 REMARK 465 ALA B 412 REMARK 465 GLN B 413 REMARK 465 ILE B 414 REMARK 465 THR B 415 REMARK 465 PRO B 416 REMARK 465 GLU B 417 REMARK 465 ASN B 543 REMARK 465 ASN B 544 REMARK 465 HIS B 545 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 304 CG CD OE1 NE2 REMARK 470 GLN B 305 CG CD OE1 NE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 ASP B 338 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 702 O HOH A 720 2.06 REMARK 500 OD1 ASP A 407 O HOH A 701 2.15 REMARK 500 OE1 GLU B 503 O HOH B 701 2.17 REMARK 500 O HOH B 788 O HOH B 815 2.17 REMARK 500 O HOH A 716 O HOH A 866 2.18 REMARK 500 O GLN A 418 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 487 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO B 487 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 407 84.65 62.48 REMARK 500 GLN B 278 -168.87 -169.24 REMARK 500 ALA B 280 -87.65 -74.43 REMARK 500 ARG B 388 -16.49 78.30 REMARK 500 VAL B 425 -66.17 -98.78 REMARK 500 PRO B 482 177.29 -58.73 REMARK 500 GLN B 485 -5.36 -58.76 REMARK 500 ASN B 486 -77.28 -127.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 59N A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 59N B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DEY RELATED DB: PDB REMARK 900 RELATED ID: 5DFP RELATED DB: PDB DBREF 5DEW A 249 545 UNP Q13153 PAK1_HUMAN 249 545 DBREF 5DEW B 249 545 UNP Q13153 PAK1_HUMAN 249 545 SEQADV 5DEW ASN A 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 5DEW GLU A 423 UNP Q13153 THR 423 ENGINEERED MUTATION SEQADV 5DEW ASN B 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 5DEW GLU B 423 UNP Q13153 THR 423 ENGINEERED MUTATION SEQRES 1 A 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 A 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 A 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 A 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 A 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 A 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 A 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 A 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 A 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 A 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 A 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE LYS SEQRES 12 A 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 A 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 A 297 GLN SER LYS ARG SER GLU MET VAL GLY THR PRO TYR TRP SEQRES 15 A 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 A 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 A 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 A 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 A 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 A 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 A 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 A 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 A 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS SEQRES 1 B 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 B 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 B 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 B 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 B 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 B 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 B 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 B 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 B 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 B 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 B 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE LYS SEQRES 12 B 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 B 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 B 297 GLN SER LYS ARG SER GLU MET VAL GLY THR PRO TYR TRP SEQRES 15 B 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 B 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 B 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 B 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 B 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 B 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 B 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 B 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 B 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS HET 59N A 601 36 HET 59N B 601 36 HETNAM 59N 8-[(TRANS-4-AMINOCYCLOHEXYL)METHYL]-6-[2-CHLORO-4-(6- HETNAM 2 59N METHYLPYRAZIN-2-YL)PHENYL]-2-(ETHYLAMINO)PYRIDO[2,3- HETNAM 3 59N D]PYRIMIDIN-7(8H)-ONE FORMUL 3 59N 2(C27 H30 CL N7 O) FORMUL 5 HOH *453(H2 O) HELIX 1 AA1 ASP A 250 ILE A 260 1 11 HELIX 2 AA2 ASP A 265 LYS A 268 5 4 HELIX 3 AA3 LYS A 308 GLU A 321 1 14 HELIX 4 AA4 SER A 351 THR A 359 1 9 HELIX 5 AA5 ASP A 362 ASN A 383 1 22 HELIX 6 AA6 LYS A 391 ASP A 393 5 3 HELIX 7 AA7 THR A 427 MET A 431 5 5 HELIX 8 AA8 ALA A 432 THR A 437 1 6 HELIX 9 AA9 PRO A 443 GLY A 460 1 18 HELIX 10 AB1 ASN A 468 GLY A 480 1 13 HELIX 11 AB2 ASN A 486 LEU A 490 5 5 HELIX 12 AB3 SER A 491 LEU A 502 1 12 HELIX 13 AB4 SER A 511 LEU A 516 1 6 HELIX 14 AB5 GLN A 517 ALA A 524 5 8 HELIX 15 AB6 PRO A 526 SER A 529 5 4 HELIX 16 AB7 LEU A 530 THR A 541 1 12 HELIX 17 AB8 LYS B 256 ILE B 260 5 5 HELIX 18 AB9 ASP B 265 LYS B 269 1 5 HELIX 19 AC1 LYS B 308 ASN B 322 1 15 HELIX 20 AC2 SER B 351 THR B 359 1 9 HELIX 21 AC3 ASP B 362 ASN B 383 1 22 HELIX 22 AC4 LYS B 391 ASP B 393 5 3 HELIX 23 AC5 ALA B 432 THR B 437 1 6 HELIX 24 AC6 PRO B 443 GLY B 460 1 18 HELIX 25 AC7 ASN B 468 GLY B 480 1 13 HELIX 26 AC8 SER B 491 LEU B 502 1 12 HELIX 27 AC9 SER B 511 LEU B 516 1 6 HELIX 28 AD1 GLN B 517 ALA B 524 5 8 HELIX 29 AD2 PRO B 526 SER B 529 5 4 HELIX 30 AD3 LEU B 530 LYS B 542 1 13 SHEET 1 AA1 5 TYR A 270 GLY A 279 0 SHEET 2 AA1 5 GLY A 282 ASP A 289 -1 O VAL A 284 N ILE A 276 SHEET 3 AA1 5 GLU A 295 ASN A 302 -1 O GLN A 300 N THR A 283 SHEET 4 AA1 5 GLU A 339 GLU A 345 -1 O MET A 344 N ALA A 297 SHEET 5 AA1 5 TYR A 330 VAL A 336 -1 N ASP A 332 O VAL A 343 SHEET 1 AA2 2 VAL A 385 ILE A 386 0 SHEET 2 AA2 2 ALA A 412 GLN A 413 -1 O ALA A 412 N ILE A 386 SHEET 1 AA3 2 ILE A 395 LEU A 397 0 SHEET 2 AA3 2 VAL A 403 LEU A 405 -1 O LYS A 404 N LEU A 396 SHEET 1 AA4 5 TYR B 270 GLY B 277 0 SHEET 2 AA4 5 THR B 283 ASP B 289 -1 O VAL B 284 N GLY B 277 SHEET 3 AA4 5 GLU B 295 ASN B 302 -1 O ILE B 298 N TYR B 285 SHEET 4 AA4 5 GLU B 339 GLU B 345 -1 O MET B 344 N ALA B 297 SHEET 5 AA4 5 TYR B 330 VAL B 336 -1 N TYR B 334 O TRP B 341 SHEET 1 AA5 2 ILE B 395 LEU B 397 0 SHEET 2 AA5 2 VAL B 403 LEU B 405 -1 O LYS B 404 N LEU B 396 CISPEP 1 GLN B 304 GLN B 305 0 6.37 CISPEP 2 GLY B 480 THR B 481 0 8.43 CISPEP 3 ASN B 486 PRO B 487 0 -11.77 SITE 1 AC1 12 LYS A 299 GLU A 315 MET A 344 GLU A 345 SITE 2 AC1 12 TYR A 346 LEU A 347 ASP A 393 LEU A 396 SITE 3 AC1 12 THR A 406 HOH A 712 HOH A 743 HOH A 832 SITE 1 AC2 14 ALA B 297 LYS B 299 MET B 301 MET B 319 SITE 2 AC2 14 MET B 344 GLU B 345 TYR B 346 LEU B 347 SITE 3 AC2 14 ASP B 393 ASN B 394 LEU B 396 THR B 406 SITE 4 AC2 14 HOH B 753 HOH B 839 CRYST1 62.556 81.053 66.499 90.00 106.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015986 0.000000 0.004703 0.00000 SCALE2 0.000000 0.012338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015675 0.00000