HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-AUG-15 5DEY TITLE CRYSTAL STRUCTURE OF PAK1 IN COMPLEX WITH AN INHIBITOR COMPOUND G-5555 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUE 249-545; COMPND 5 SYNONYM: ALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,C.TAM,W.WANG REVDAT 2 01-JUN-16 5DEY 1 REMARK REVDAT 1 27-JAN-16 5DEY 0 JRNL AUTH C.O.NDUBAKU,J.J.CRAWFORD,J.DROBNICK,I.ALIAGAS,D.CAMPBELL, JRNL AUTH 2 P.DONG,L.M.DORNAN,S.DURON,J.EPLER,L.GAZZARD,C.E.HEISE, JRNL AUTH 3 K.P.HOEFLICH,D.JAKUBIAK,H.LA,W.LEE,B.LIN,J.P.LYSSIKATOS, JRNL AUTH 4 J.MAKSIMOSKA,R.MARMORSTEIN,L.J.MURRAY,T.O'BRIEN,A.OH, JRNL AUTH 5 S.RAMASWAMY,W.WANG,X.ZHAO,Y.ZHONG,E.BLACKWOOD,J.RUDOLPH JRNL TITL DESIGN OF SELECTIVE PAK1 INHIBITOR G-5555: IMPROVING JRNL TITL 2 PROPERTIES BY EMPLOYING AN UNORTHODOX LOW-PK A POLAR MOIETY. JRNL REF ACS MED.CHEM.LETT. V. 6 1241 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26713112 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00398 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 35132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5900 - 4.7491 1.00 3074 152 0.1489 0.1761 REMARK 3 2 4.7491 - 3.7710 1.00 3052 150 0.1444 0.1985 REMARK 3 3 3.7710 - 3.2948 1.00 2997 157 0.1840 0.2139 REMARK 3 4 3.2948 - 2.9937 1.00 3047 146 0.2035 0.2407 REMARK 3 5 2.9937 - 2.7792 1.00 3001 161 0.2177 0.2607 REMARK 3 6 2.7792 - 2.6154 1.00 2999 170 0.2190 0.2678 REMARK 3 7 2.6154 - 2.4845 1.00 2997 162 0.2120 0.2672 REMARK 3 8 2.4845 - 2.3764 1.00 2985 135 0.2215 0.3081 REMARK 3 9 2.3764 - 2.2849 0.96 2895 146 0.2352 0.2791 REMARK 3 10 2.2849 - 2.2061 0.88 2655 144 0.2363 0.2692 REMARK 3 11 2.2061 - 2.1371 0.74 2212 111 0.2343 0.3025 REMARK 3 12 2.1371 - 2.0760 0.50 1498 86 0.2524 0.3550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4650 REMARK 3 ANGLE : 1.079 6293 REMARK 3 CHIRALITY : 0.043 714 REMARK 3 PLANARITY : 0.005 808 REMARK 3 DIHEDRAL : 14.310 1751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 250:346 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1533 -21.5430 6.8762 REMARK 3 T TENSOR REMARK 3 T11: 0.6001 T22: 0.4560 REMARK 3 T33: 0.5175 T12: 0.0065 REMARK 3 T13: 0.1953 T23: -0.1077 REMARK 3 L TENSOR REMARK 3 L11: 0.2941 L22: 0.1152 REMARK 3 L33: 0.1301 L12: -0.0163 REMARK 3 L13: 0.1457 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.2977 S12: 0.1125 S13: 0.0311 REMARK 3 S21: -0.3121 S22: -0.0516 S23: -0.1044 REMARK 3 S31: 0.4716 S32: -0.1083 S33: -0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 347:541 OR CHAIN A AND RESID 601 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9216 0.1874 21.0822 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.3459 REMARK 3 T33: 0.1671 T12: -0.0640 REMARK 3 T13: -0.0359 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.1418 L22: 0.5655 REMARK 3 L33: 2.0525 L12: -0.5249 REMARK 3 L13: -0.6693 L23: 0.6921 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0331 S13: -0.1872 REMARK 3 S21: -0.0828 S22: -0.0143 S23: -0.0017 REMARK 3 S31: -0.3348 S32: 0.4503 S33: -0.0635 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 255:346 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1927 -15.6865 -15.1171 REMARK 3 T TENSOR REMARK 3 T11: 0.3612 T22: 0.2224 REMARK 3 T33: 0.4738 T12: -0.0392 REMARK 3 T13: 0.0702 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.2996 L22: 0.1663 REMARK 3 L33: 0.4190 L12: 0.0967 REMARK 3 L13: 0.0715 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: 0.1137 S13: 0.1617 REMARK 3 S21: 0.2732 S22: -0.0806 S23: 0.3478 REMARK 3 S31: 0.3859 S32: 0.0118 S33: -0.0133 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 347:541 OR CHAIN B AND RESID 601 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6024 5.2872 -16.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1581 REMARK 3 T33: 0.2522 T12: 0.0584 REMARK 3 T13: 0.0059 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.7860 L22: -0.1676 REMARK 3 L33: 0.9267 L12: 1.0131 REMARK 3 L13: -0.5092 L23: -0.8101 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: -0.0395 S13: 0.1335 REMARK 3 S21: 0.2186 S22: 0.0369 S23: 0.2806 REMARK 3 S31: -0.0617 S32: 0.1479 S33: 0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN AT 19 C FROM 1.0 REMARK 280 UL + 1.0 UL VAPOR DIFFUSION DROPS CONTAINING 10 MG/ML PROTEIN, 1 REMARK 280 MM LIGAND, 0.15 M DL-MALIC ACID PH 7.0, 20% - 30% PEG 3350, 4% 1, REMARK 280 3-PROPANEDIOL AND 0.1 M SODIUM MALONATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.93150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 249 REMARK 465 HIS A 545 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 ILE B 253 REMARK 465 LEU B 254 REMARK 465 CYS B 411 REMARK 465 ALA B 412 REMARK 465 GLN B 413 REMARK 465 ILE B 414 REMARK 465 THR B 415 REMARK 465 PRO B 416 REMARK 465 GLU B 417 REMARK 465 ASN B 543 REMARK 465 ASN B 544 REMARK 465 HIS B 545 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 304 CG CD OE1 NE2 REMARK 470 GLN B 305 CG CD OE1 NE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 780 O HOH B 799 1.81 REMARK 500 O HOH A 758 O HOH A 772 1.93 REMARK 500 O HOH B 801 O HOH B 810 2.01 REMARK 500 O HOH B 702 O HOH B 717 2.02 REMARK 500 O GLU B 507 O HOH B 701 2.09 REMARK 500 OH TYR A 464 O HOH A 701 2.09 REMARK 500 OH TYR B 270 O HOH B 702 2.12 REMARK 500 O ASP B 407 O HOH B 703 2.13 REMARK 500 O HOH A 705 O HOH A 714 2.14 REMARK 500 OE1 GLU A 372 O HOH A 702 2.16 REMARK 500 N ASN A 302 O HOH A 703 2.18 REMARK 500 OD1 ASP B 393 O HOH B 704 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 281 -91.61 -69.69 REMARK 500 LYS A 308 75.13 55.56 REMARK 500 ARG A 388 -1.54 69.33 REMARK 500 ASP A 407 92.95 50.94 REMARK 500 MET A 424 85.60 -69.80 REMARK 500 LYS B 256 33.68 -95.24 REMARK 500 GLN B 278 -165.26 -168.75 REMARK 500 ALA B 280 -84.96 -64.14 REMARK 500 LEU B 303 -73.43 -64.74 REMARK 500 ASN B 322 70.24 -108.26 REMARK 500 ARG B 388 -22.24 79.14 REMARK 500 VAL B 425 -70.08 -79.22 REMARK 500 THR B 437 30.84 -89.51 REMARK 500 ARG B 438 27.46 29.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 406 ASP B 407 -126.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 59T A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 59T B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DEW RELATED DB: PDB REMARK 900 RELATED ID: 5DFP RELATED DB: PDB DBREF 5DEY A 249 545 UNP Q13153 PAK1_HUMAN 249 545 DBREF 5DEY B 249 545 UNP Q13153 PAK1_HUMAN 249 545 SEQADV 5DEY ASN A 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 5DEY GLU A 423 UNP Q13153 THR 423 ENGINEERED MUTATION SEQADV 5DEY ASN B 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 5DEY GLU B 423 UNP Q13153 THR 423 ENGINEERED MUTATION SEQRES 1 A 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 A 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 A 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 A 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 A 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 A 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 A 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 A 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 A 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 A 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 A 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE LYS SEQRES 12 A 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 A 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 A 297 GLN SER LYS ARG SER GLU MET VAL GLY THR PRO TYR TRP SEQRES 15 A 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 A 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 A 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 A 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 A 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 A 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 A 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 A 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 A 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS SEQRES 1 B 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 B 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 B 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 B 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 B 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 B 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 B 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 B 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 B 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 B 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 B 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE LYS SEQRES 12 B 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 B 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 B 297 GLN SER LYS ARG SER GLU MET VAL GLY THR PRO TYR TRP SEQRES 15 B 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 B 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 B 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 B 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 B 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 B 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 B 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 B 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 B 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS HET 59T A 601 35 HET 59T B 601 35 HETNAM 59T 8-[(TRANS-5-AMINO-1,3-DIOXAN-2-YL)METHYL]-6-[2-CHLORO- HETNAM 2 59T 4-(6-METHYLPYRIDIN-2-YL)PHENYL]-2-(METHYLAMINO) HETNAM 3 59T PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE FORMUL 3 59T 2(C25 H25 CL N6 O3) FORMUL 5 HOH *195(H2 O) HELIX 1 AA1 GLU A 251 VAL A 261 1 11 HELIX 2 AA2 ASP A 265 LYS A 268 5 4 HELIX 3 AA3 GLN A 304 GLN A 306 5 3 HELIX 4 AA4 LYS A 308 ASN A 322 1 15 HELIX 5 AA5 LEU A 352 THR A 359 1 8 HELIX 6 AA6 ASP A 362 SER A 382 1 21 HELIX 7 AA7 LYS A 391 ASP A 393 5 3 HELIX 8 AA8 THR A 427 MET A 431 5 5 HELIX 9 AA9 ALA A 432 THR A 437 1 6 HELIX 10 AB1 LYS A 444 GLY A 460 1 17 HELIX 11 AB2 ASN A 468 GLY A 480 1 13 HELIX 12 AB3 ASN A 486 LEU A 490 5 5 HELIX 13 AB4 SER A 491 LEU A 502 1 12 HELIX 14 AB5 SER A 511 LEU A 516 1 6 HELIX 15 AB6 GLN A 517 ALA A 524 5 8 HELIX 16 AB7 PRO A 526 SER A 528 5 3 HELIX 17 AB8 SER A 529 THR A 541 1 13 HELIX 18 AB9 LYS B 256 VAL B 261 1 6 HELIX 19 AC1 ASP B 265 LYS B 269 1 5 HELIX 20 AC2 LYS B 308 ASN B 322 1 15 HELIX 21 AC3 LEU B 352 THR B 359 1 8 HELIX 22 AC4 ASP B 362 ASN B 383 1 22 HELIX 23 AC5 LYS B 391 ASP B 393 5 3 HELIX 24 AC6 ALA B 432 THR B 437 1 6 HELIX 25 AC7 PRO B 443 GLY B 460 1 18 HELIX 26 AC8 ASN B 468 ASN B 479 1 12 HELIX 27 AC9 ASN B 486 LEU B 490 5 5 HELIX 28 AD1 SER B 491 LEU B 502 1 12 HELIX 29 AD2 SER B 511 LEU B 516 1 6 HELIX 30 AD3 GLN B 517 ALA B 524 5 8 HELIX 31 AD4 PRO B 526 SER B 529 5 4 HELIX 32 AD5 LEU B 530 LYS B 542 1 13 SHEET 1 AA1 6 SER A 262 VAL A 263 0 SHEET 2 AA1 6 TYR A 330 VAL A 336 1 O LEU A 335 N SER A 262 SHEET 3 AA1 6 GLU A 339 GLU A 345 -1 O VAL A 343 N ASP A 332 SHEET 4 AA1 6 GLU A 295 ASN A 302 -1 N MET A 301 O LEU A 340 SHEET 5 AA1 6 THR A 283 ASP A 289 -1 N THR A 283 O GLN A 300 SHEET 6 AA1 6 TYR A 270 GLN A 278 -1 N GLU A 274 O THR A 286 SHEET 1 AA2 3 GLY A 350 SER A 351 0 SHEET 2 AA2 3 ILE A 395 LEU A 397 -1 O LEU A 397 N GLY A 350 SHEET 3 AA2 3 VAL A 403 LEU A 405 -1 O LYS A 404 N LEU A 396 SHEET 1 AA3 2 VAL A 385 ILE A 386 0 SHEET 2 AA3 2 ALA A 412 GLN A 413 -1 O ALA A 412 N ILE A 386 SHEET 1 AA4 5 TYR B 270 GLY B 277 0 SHEET 2 AA4 5 THR B 283 ASP B 289 -1 O VAL B 284 N GLY B 277 SHEET 3 AA4 5 GLU B 295 ASN B 302 -1 O ILE B 298 N TYR B 285 SHEET 4 AA4 5 GLU B 339 GLU B 345 -1 O MET B 344 N ALA B 297 SHEET 5 AA4 5 TYR B 330 VAL B 336 -1 N TYR B 334 O TRP B 341 SHEET 1 AA5 3 GLY B 350 SER B 351 0 SHEET 2 AA5 3 ILE B 395 LEU B 397 -1 O LEU B 397 N GLY B 350 SHEET 3 AA5 3 VAL B 403 LEU B 405 -1 O LYS B 404 N LEU B 396 SSBOND 1 CYS A 360 CYS B 360 1555 1556 2.05 CISPEP 1 GLN B 304 GLN B 305 0 5.30 CISPEP 2 GLY B 480 THR B 481 0 2.57 SITE 1 AC1 11 LYS A 299 MET A 301 GLU A 315 VAL A 342 SITE 2 AC1 11 MET A 344 GLU A 345 TYR A 346 LEU A 347 SITE 3 AC1 11 ASP A 393 LEU A 396 THR A 406 SITE 1 AC2 13 ALA B 297 LYS B 299 MET B 301 MET B 319 SITE 2 AC2 13 MET B 344 GLU B 345 TYR B 346 LEU B 347 SITE 3 AC2 13 ASP B 393 ASN B 394 LEU B 396 THR B 406 SITE 4 AC2 13 ASP B 407 CRYST1 61.661 81.863 65.916 90.00 106.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016218 0.000000 0.004772 0.00000 SCALE2 0.000000 0.012216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015814 0.00000