HEADER ELECTRON TRANSPORT 27-AUG-15 5DFS TITLE CRYSTAL STRUCTURE OF SPIDER MONKEY CYTOCHROME C AT 1.15 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ATELES SP.; SOURCE 3 ORGANISM_COMMON: SPIDER MONKEY; SOURCE 4 ORGANISM_TAXID: 9511; SOURCE 5 GENE: CYCS, CYC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MITOCHONDRIAL CYTOCHROME C, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.C.MOU,L.J.MCCLELLAND,M.E.JEAKINS-COOLEY,M.E.GOLDES,S.R.SPRANG, AUTHOR 2 B.E.BOWLER REVDAT 4 27-SEP-23 5DFS 1 REMARK REVDAT 3 10-MAR-21 5DFS 1 COMPND JRNL REMARK HET REVDAT 3 2 1 HETNAM HETSYN FORMUL LINK REVDAT 3 3 1 ATOM REVDAT 2 08-JUN-16 5DFS 1 JRNL REVDAT 1 02-MAR-16 5DFS 0 JRNL AUTH M.E.GOLDES,M.E.JEAKINS-COOLEY,L.J.MCCLELLAND,T.C.MOU, JRNL AUTH 2 B.E.BOWLER JRNL TITL DISRUPTION OF A HYDROGEN BOND NETWORK IN HUMAN VERSUS SPIDER JRNL TITL 2 MONKEY CYTOCHROME C AFFECTS HEME CREVICE STABILITY. JRNL REF J.INORG.BIOCHEM. V. 158 62 2016 JRNL REFN ISSN 0162-0134 JRNL PMID 26775610 JRNL DOI 10.1016/J.JINORGBIO.2015.12.025 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 62325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.7537 - 2.7659 0.93 4257 133 0.1308 0.1533 REMARK 3 2 2.7659 - 2.1977 0.98 4322 145 0.1452 0.1527 REMARK 3 3 2.1977 - 1.9206 0.95 4241 143 0.1415 0.1773 REMARK 3 4 1.9206 - 1.7453 0.98 4296 148 0.1488 0.1775 REMARK 3 5 1.7453 - 1.6204 1.00 4408 145 0.1441 0.1675 REMARK 3 6 1.6204 - 1.5249 0.99 4353 147 0.1476 0.1660 REMARK 3 7 1.5249 - 1.4486 0.98 4296 145 0.1831 0.2096 REMARK 3 8 1.4486 - 1.3856 1.00 4369 145 0.1740 0.2135 REMARK 3 9 1.3856 - 1.3323 0.97 4280 144 0.2096 0.2292 REMARK 3 10 1.3323 - 1.2864 0.99 4362 133 0.2011 0.2256 REMARK 3 11 1.2864 - 1.2462 0.97 4250 140 0.2412 0.2917 REMARK 3 12 1.2462 - 1.2106 0.99 4262 161 0.2233 0.2372 REMARK 3 13 1.2106 - 1.1787 0.99 4343 143 0.2206 0.2231 REMARK 3 14 1.1787 - 1.1500 0.97 4277 137 0.2581 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 43.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1837 REMARK 3 ANGLE : 1.637 2468 REMARK 3 CHIRALITY : 0.078 239 REMARK 3 PLANARITY : 0.012 302 REMARK 3 DIHEDRAL : 15.038 705 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.22 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 14.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2YCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LICL2, 20% PEG 6000, 0.1 M REMARK 280 HEPES, PH 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.36650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 99 O HOH A 305 1.47 REMARK 500 HO1 EDO B 205 O HOH B 306 1.53 REMARK 500 HZ2 LYS B 13 O HOH B 303 1.59 REMARK 500 OD2 ASP B 62 O HOH B 301 1.92 REMARK 500 O HOH B 338 O HOH B 370 1.96 REMARK 500 OE1 GLU B 21 O HOH B 302 1.96 REMARK 500 O1 EDO A 203 O HOH A 301 2.07 REMARK 500 O HOH B 358 O HOH B 390 2.08 REMARK 500 OE1 GLU A 61 O HOH A 302 2.09 REMARK 500 O HOH A 312 O HOH A 438 2.14 REMARK 500 O HOH A 344 O HOH A 413 2.15 REMARK 500 O HOH A 426 O HOH A 433 2.16 REMARK 500 NZ LYS B 13 O HOH B 303 2.16 REMARK 500 O HOH A 301 O HOH A 424 2.17 REMARK 500 O HOH B 301 O HOH B 437 2.18 REMARK 500 O HOH A 336 O HOH A 383 2.19 REMARK 500 O HOH B 348 O HOH B 426 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 333 O HOH B 445 2658 2.12 REMARK 500 O HOH B 315 O HOH B 449 2647 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 62 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 62 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -138.94 -121.25 REMARK 500 ASN A 70 88.85 -161.27 REMARK 500 LYS B 27 -139.52 -119.67 REMARK 500 ASN B 70 89.77 -165.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 89.6 REMARK 620 3 HEC A 201 NB 87.9 90.3 REMARK 620 4 HEC A 201 NC 92.1 178.3 90.2 REMARK 620 5 HEC A 201 ND 91.5 89.7 179.3 89.9 REMARK 620 6 MET A 80 SD 174.4 84.9 92.8 93.4 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 88.8 REMARK 620 3 HEC B 201 NB 88.5 89.4 REMARK 620 4 HEC B 201 NC 93.4 177.5 89.5 REMARK 620 5 HEC B 201 ND 90.4 90.0 178.8 91.1 REMARK 620 6 MET B 80 SD 173.6 85.1 93.4 92.8 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 14 DBREF 5DFS A 0 104 UNP P00003 CYC_ATESP 1 105 DBREF 5DFS B 0 104 UNP P00003 CYC_ATESP 1 105 SEQRES 1 A 105 MET GLY ASP VAL GLU LYS GLY LYS ARG ILE PHE ILE MET SEQRES 2 A 105 LYS CYS SER GLN CYS HIS THR VAL GLU LYS GLY GLY LYS SEQRES 3 A 105 HIS LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG SEQRES 4 A 105 LYS THR GLY GLN ALA SER GLY PHE THR TYR THR GLU ALA SEQRES 5 A 105 ASN LYS ASN LYS GLY ILE ILE TRP GLY GLU ASP THR LEU SEQRES 6 A 105 MET GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY SEQRES 7 A 105 THR LYS MET ILE PHE VAL GLY ILE LYS LYS LYS GLU GLU SEQRES 8 A 105 ARG ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN SEQRES 9 A 105 GLU SEQRES 1 B 105 MET GLY ASP VAL GLU LYS GLY LYS ARG ILE PHE ILE MET SEQRES 2 B 105 LYS CYS SER GLN CYS HIS THR VAL GLU LYS GLY GLY LYS SEQRES 3 B 105 HIS LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG SEQRES 4 B 105 LYS THR GLY GLN ALA SER GLY PHE THR TYR THR GLU ALA SEQRES 5 B 105 ASN LYS ASN LYS GLY ILE ILE TRP GLY GLU ASP THR LEU SEQRES 6 B 105 MET GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY SEQRES 7 B 105 THR LYS MET ILE PHE VAL GLY ILE LYS LYS LYS GLU GLU SEQRES 8 B 105 ARG ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN SEQRES 9 B 105 GLU HET HEC A 201 73 HET EDO A 202 10 HET EDO A 203 10 HET CL A 204 1 HET CL A 205 1 HET HEC B 201 73 HET EDO B 202 10 HET EDO B 203 10 HET EDO B 204 10 HET EDO B 205 10 HETNAM HEC HEME C HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 6 CL 2(CL 1-) FORMUL 13 HOH *308(H2 O) HELIX 1 AA1 ASP A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 GLY A 56 1 8 HELIX 3 AA3 GLY A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 ASP B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 LYS B 55 1 7 HELIX 8 AA8 GLY B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.80 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.98 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.79 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.94 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.02 LINK SD MET A 80 FE HEC A 201 1555 1555 2.30 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.00 LINK SD MET B 80 FE HEC B 201 1555 1555 2.30 SITE 1 AC1 21 LYS A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 21 THR A 28 GLY A 29 PRO A 30 THR A 40 SITE 3 AC1 21 GLY A 41 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 21 TRP A 59 TYR A 67 THR A 78 LYS A 79 SITE 5 AC1 21 MET A 80 ILE A 81 PHE A 82 HOH A 334 SITE 6 AC1 21 LYS B 55 SITE 1 AC2 2 GLY A 1 HOH A 326 SITE 1 AC3 4 LYS A 55 HOH A 301 HOH A 306 HOH A 409 SITE 1 AC4 2 GLU A 61 LYS A 99 SITE 1 AC5 3 GLU A 50 HOH A 395 HOH A 422 SITE 1 AC6 4 LYS A 39 LYS B 13 HOH B 304 HOH B 375 SITE 1 AC7 3 LYS B 87 LYS B 88 GLU B 89 SITE 1 AC8 4 LYS B 25 HOH B 312 HOH B 315 HOH B 381 SITE 1 AC9 5 GLY B 60 GLU B 61 LYS B 99 HOH B 306 SITE 2 AC9 5 HOH B 310 SITE 1 AD1 23 LYS B 13 CYS B 14 SER B 15 GLN B 16 SITE 2 AD1 23 HIS B 18 LYS B 27 THR B 28 GLY B 29 SITE 3 AD1 23 PRO B 30 THR B 40 GLY B 41 TYR B 48 SITE 4 AD1 23 THR B 49 ASN B 52 TRP B 59 TYR B 67 SITE 5 AD1 23 THR B 78 LYS B 79 MET B 80 ILE B 81 SITE 6 AD1 23 PHE B 82 HOH B 347 HOH B 362 SITE 1 AD2 23 PHE B 10 LYS B 13 SER B 15 GLN B 16 SITE 2 AD2 23 CYS B 17 HIS B 18 THR B 28 GLY B 29 SITE 3 AD2 23 PRO B 30 THR B 40 GLY B 41 TYR B 48 SITE 4 AD2 23 THR B 49 ASN B 52 TRP B 59 TYR B 67 SITE 5 AD2 23 THR B 78 LYS B 79 MET B 80 ILE B 81 SITE 6 AD2 23 PHE B 82 HOH B 347 HOH B 362 CRYST1 31.534 42.733 67.654 90.00 94.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031712 0.000000 0.002479 0.00000 SCALE2 0.000000 0.023401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014826 0.00000