HEADER CELL ADHESION 31-AUG-15 5DHM TITLE CRYSTAL STRUCTURE OF THE FIMBRIAL PROTEIN MFA4 FROM PORPHYROMONAS TITLE 2 GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOREACTIVE 32 KDA ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-51; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CLEAVED BY CHYMOTRYPSIN FROM FULL-LENGTH MOLECULE.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IMMUNOREACTIVE 32 KDA ANTIGEN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 52-333; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CLEAVED BY CHYMOTRYPSIN FROM FULL-LENGTH MOLECULE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS ATCC 33277; SOURCE 3 ORGANISM_TAXID: 431947; SOURCE 4 ATCC: 33277; SOURCE 5 GENE: PGN_0290; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HIS1A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS ATCC 33277; SOURCE 12 ORGANISM_TAXID: 431947; SOURCE 13 ATCC: 33277; SOURCE 14 GENE: PGN_0290; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: HIS1A KEYWDS FIMBRIA, ADHESIN, PERIODONTITIS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.KLOPPSTECK,M.HALL,K.PERSSON REVDAT 3 23-OCT-24 5DHM 1 REMARK REVDAT 2 08-JUN-16 5DHM 1 REVDAT 1 06-APR-16 5DHM 0 JRNL AUTH P.KLOPPSTECK,M.HALL,Y.HASEGAWA,K.PERSSON JRNL TITL STRUCTURE OF THE FIMBRIAL PROTEIN MFA4 FROM PORPHYROMONAS JRNL TITL 2 GINGIVALIS IN ITS PRECURSOR FORM: IMPLICATIONS FOR A JRNL TITL 3 DONOR-STRAND COMPLEMENTATION MECHANISM. JRNL REF SCI REP V. 6 22945 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26972441 JRNL DOI 10.1038/SREP22945 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.5602 - 5.0631 0.99 2766 148 0.1674 0.1995 REMARK 3 2 5.0631 - 4.0191 0.99 2631 127 0.1314 0.1833 REMARK 3 3 4.0191 - 3.5112 1.00 2623 144 0.1718 0.2120 REMARK 3 4 3.5112 - 3.1902 1.00 2587 135 0.1859 0.2050 REMARK 3 5 3.1902 - 2.9616 0.99 2564 130 0.2069 0.2389 REMARK 3 6 2.9616 - 2.7870 1.00 2583 125 0.2054 0.3029 REMARK 3 7 2.7870 - 2.6474 1.00 2531 148 0.2126 0.2455 REMARK 3 8 2.6474 - 2.5322 1.00 2578 141 0.2053 0.2742 REMARK 3 9 2.5322 - 2.4347 1.00 2553 140 0.2064 0.2635 REMARK 3 10 2.4347 - 2.3507 1.00 2525 136 0.2031 0.2408 REMARK 3 11 2.3507 - 2.2772 1.00 2534 138 0.2060 0.2794 REMARK 3 12 2.2772 - 2.2121 1.00 2569 149 0.1984 0.2429 REMARK 3 13 2.2121 - 2.1538 1.00 2531 156 0.1939 0.2551 REMARK 3 14 2.1538 - 2.1013 1.00 2512 120 0.2034 0.2675 REMARK 3 15 2.1013 - 2.0535 1.00 2572 128 0.2021 0.2203 REMARK 3 16 2.0535 - 2.0098 1.00 2505 146 0.2082 0.2197 REMARK 3 17 2.0098 - 1.9696 0.99 2511 148 0.2229 0.2895 REMARK 3 18 1.9696 - 1.9324 1.00 2542 125 0.2364 0.3053 REMARK 3 19 1.9324 - 1.8979 0.94 2378 130 0.2464 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4690 REMARK 3 ANGLE : 1.124 6382 REMARK 3 CHIRALITY : 0.042 738 REMARK 3 PLANARITY : 0.005 814 REMARK 3 DIHEDRAL : 12.546 1723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ((CHAIN A AND RESID 24:51) AND (CHAIN C AND RESID 52 REMARK 3 -333)) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1740 11.7436 146.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.2614 REMARK 3 T33: 0.1718 T12: 0.0036 REMARK 3 T13: 0.0254 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9337 L22: 2.8785 REMARK 3 L33: 0.6768 L12: -0.2927 REMARK 3 L13: -0.2483 L23: 0.1780 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: -0.0217 S13: -0.0977 REMARK 3 S21: 0.1018 S22: 0.0643 S23: 0.0836 REMARK 3 S31: 0.1514 S32: -0.0133 S33: 0.0631 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ((CHAIN B AND RESID 31:51) AND (CHAIN D AND RESID REMARK 3 53:333)) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7221 -13.2568 112.2309 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.3216 REMARK 3 T33: 0.2872 T12: -0.0912 REMARK 3 T13: -0.0716 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.6811 L22: 4.9583 REMARK 3 L33: 0.9142 L12: 1.2814 REMARK 3 L13: 0.0551 L23: 0.1158 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: 0.0530 S13: 0.0139 REMARK 3 S21: -0.6636 S22: 0.1525 S23: 0.3790 REMARK 3 S31: 0.0826 S32: -0.0261 S33: -0.0047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 327588 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 84.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% POLYGLUTAMIC ACID (PGA), 20% REMARK 280 PEG4000 AND 0.1 M TRIS PH 8.0. PROTEIN WAS TREATED WITH A- REMARK 280 CHYMOTRYPSIN BEFORE CRYSTALLIZATION., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.34150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.18200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.26800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.18200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.34150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.26800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 LYS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 PRO A 7 REMARK 465 MSE A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 TYR A 11 REMARK 465 ASP A 12 REMARK 465 ILE A 13 REMARK 465 PRO A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 GLY A 23 REMARK 465 SER C 89 REMARK 465 GLY C 90 REMARK 465 GLY C 91 REMARK 465 VAL C 298 REMARK 465 ASP C 299 REMARK 465 ASP C 300 REMARK 465 GLY C 301 REMARK 465 THR C 302 REMARK 465 LEU C 303 REMARK 465 PRO C 304 REMARK 465 PRO C 305 REMARK 465 PRO C 306 REMARK 465 GLU C 307 REMARK 465 PHE C 308 REMARK 465 MSE B -1 REMARK 465 LYS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 PRO B 7 REMARK 465 MSE B 8 REMARK 465 SER B 9 REMARK 465 ASP B 10 REMARK 465 TYR B 11 REMARK 465 ASP B 12 REMARK 465 ILE B 13 REMARK 465 PRO B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 GLU B 17 REMARK 465 ASN B 18 REMARK 465 LEU B 19 REMARK 465 TYR B 20 REMARK 465 PHE B 21 REMARK 465 GLN B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 MSE B 25 REMARK 465 GLU B 26 REMARK 465 PRO B 27 REMARK 465 VAL B 28 REMARK 465 GLU B 29 REMARK 465 ASP B 30 REMARK 465 GLU D 52 REMARK 465 GLY D 85 REMARK 465 ASN D 86 REMARK 465 THR D 87 REMARK 465 PHE D 88 REMARK 465 VAL D 298 REMARK 465 ASP D 299 REMARK 465 ASP D 300 REMARK 465 GLY D 301 REMARK 465 THR D 302 REMARK 465 LEU D 303 REMARK 465 PRO D 304 REMARK 465 PRO D 305 REMARK 465 PRO D 306 REMARK 465 GLU D 307 REMARK 465 PHE D 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 31 O HOH A 401 2.10 REMARK 500 NZ LYS D 287 O HOH D 401 2.12 REMARK 500 OD2 ASP C 229 O HOH C 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 31 OE2 GLU A 47 4457 1.56 REMARK 500 O HOH C 499 O HOH D 455 4457 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 242 56.71 37.16 REMARK 500 ALA C 257 114.62 68.90 REMARK 500 ASN D 174 64.39 62.96 REMARK 500 ALA D 257 120.58 67.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 255 PRO C 256 148.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 5DHM A 26 51 UNP B2RHG4 B2RHG4_PORG3 26 51 DBREF 5DHM C 52 333 UNP B2RHG4 B2RHG4_PORG3 52 333 DBREF 5DHM B 26 51 UNP B2RHG4 B2RHG4_PORG3 26 51 DBREF 5DHM D 52 333 UNP B2RHG4 B2RHG4_PORG3 52 333 SEQADV 5DHM MSE A -1 UNP B2RHG4 INITIATING METHIONINE SEQADV 5DHM LYS A 0 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 1 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 2 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 3 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 4 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 5 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS A 6 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PRO A 7 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM MSE A 8 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM SER A 9 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASP A 10 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM TYR A 11 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASP A 12 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ILE A 13 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PRO A 14 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM THR A 15 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM THR A 16 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLU A 17 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASN A 18 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM LEU A 19 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM TYR A 20 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PHE A 21 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLN A 22 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLY A 23 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ALA A 24 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM MSE A 25 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM MSE B -1 UNP B2RHG4 INITIATING METHIONINE SEQADV 5DHM LYS B 0 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 1 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 2 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 3 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 4 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 5 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM HIS B 6 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PRO B 7 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM MSE B 8 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM SER B 9 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASP B 10 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM TYR B 11 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASP B 12 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ILE B 13 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PRO B 14 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM THR B 15 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM THR B 16 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLU B 17 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ASN B 18 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM LEU B 19 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM TYR B 20 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM PHE B 21 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLN B 22 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM GLY B 23 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM ALA B 24 UNP B2RHG4 EXPRESSION TAG SEQADV 5DHM MSE B 25 UNP B2RHG4 EXPRESSION TAG SEQRES 1 A 53 MSE LYS HIS HIS HIS HIS HIS HIS PRO MSE SER ASP TYR SEQRES 2 A 53 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 53 MSE GLU PRO VAL GLU ASP ARG SER ILE GLU ILE SER ILE SEQRES 4 A 53 ARG VAL ASP ASP PHE THR LYS THR GLY GLU THR VAL ARG SEQRES 5 A 53 TYR SEQRES 1 C 282 GLU ARG ASN GLN GLY SER ALA ALA GLU ARG LEU ILE THR SEQRES 2 C 282 ASN LEU TYR LEU LEU LEU PHE ASP GLN SER GLY ALA ASN SEQRES 3 C 282 PRO ALA LYS TYR TYR ILE ALA GLY ASN THR PHE SER GLY SEQRES 4 C 282 GLY ILE TRP LEU PRO ASP ASP MSE LYS VAL LYS LEU ASP SEQRES 5 C 282 MSE THR GLN SER GLU ALA GLY GLU ARG LYS VAL TYR VAL SEQRES 6 C 282 VAL ALA ASN VAL ASP ASN ALA VAL LYS THR ALA LEU ASP SEQRES 7 C 282 ALA VAL ALA ASN GLU SER ASP LEU GLN THR VAL LYS ARG SEQRES 8 C 282 THR THR ALA MSE PRO TRP SER THR ASP ILE ALA SER PRO SEQRES 9 C 282 PHE LEU MSE SER GLY ASN LYS THR HIS ASP PHE LEU ALA SEQRES 10 C 282 ASN ARG LEU LEU ASP ASN VAL PRO LEU VAL ARG ALA ILE SEQRES 11 C 282 ALA LYS VAL GLU LEU ASN ILE SER LEU SER GLU LYS PHE SEQRES 12 C 282 GLN ILE VAL PRO ILE ILE VAL ASN GLY SER LEU SER GLU SEQRES 13 C 282 PHE LYS PHE ARG TYR VAL ASN PHE ASP LYS GLU THR TYR SEQRES 14 C 282 VAL VAL LYS PRO THR THR LYS PRO ASP ASN LEU ILE SER SEQRES 15 C 282 SER ALA ASN GLY VAL TRP PRO GLN ILE THR ASP TRP THR SEQRES 16 C 282 VAL TRP GLY ALA SER LEU ASN THR SER PRO ALA PRO ASP SEQRES 17 C 282 ALA GLY THR GLY TYR THR LEU ASP ALA ASN GLY LYS VAL SEQRES 18 C 282 THR ALA LEU ARG ILE VAL THR TYR LEU ASN GLU ARG ASP SEQRES 19 C 282 SER LYS GLY ALA THR VAL GLU VAL ALA LEU PRO ARG VAL SEQRES 20 C 282 ASP ASP GLY THR LEU PRO PRO PRO GLU PHE GLY PRO GLU SEQRES 21 C 282 LEU TYR ARG LEU PRO LEU PRO ASP LYS ILE LEU ARG ASN SEQRES 22 C 282 HIS TRP TYR LYS TYR GLU VAL GLU ILE SEQRES 1 B 53 MSE LYS HIS HIS HIS HIS HIS HIS PRO MSE SER ASP TYR SEQRES 2 B 53 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 B 53 MSE GLU PRO VAL GLU ASP ARG SER ILE GLU ILE SER ILE SEQRES 4 B 53 ARG VAL ASP ASP PHE THR LYS THR GLY GLU THR VAL ARG SEQRES 5 B 53 TYR SEQRES 1 D 282 GLU ARG ASN GLN GLY SER ALA ALA GLU ARG LEU ILE THR SEQRES 2 D 282 ASN LEU TYR LEU LEU LEU PHE ASP GLN SER GLY ALA ASN SEQRES 3 D 282 PRO ALA LYS TYR TYR ILE ALA GLY ASN THR PHE SER GLY SEQRES 4 D 282 GLY ILE TRP LEU PRO ASP ASP MSE LYS VAL LYS LEU ASP SEQRES 5 D 282 MSE THR GLN SER GLU ALA GLY GLU ARG LYS VAL TYR VAL SEQRES 6 D 282 VAL ALA ASN VAL ASP ASN ALA VAL LYS THR ALA LEU ASP SEQRES 7 D 282 ALA VAL ALA ASN GLU SER ASP LEU GLN THR VAL LYS ARG SEQRES 8 D 282 THR THR ALA MSE PRO TRP SER THR ASP ILE ALA SER PRO SEQRES 9 D 282 PHE LEU MSE SER GLY ASN LYS THR HIS ASP PHE LEU ALA SEQRES 10 D 282 ASN ARG LEU LEU ASP ASN VAL PRO LEU VAL ARG ALA ILE SEQRES 11 D 282 ALA LYS VAL GLU LEU ASN ILE SER LEU SER GLU LYS PHE SEQRES 12 D 282 GLN ILE VAL PRO ILE ILE VAL ASN GLY SER LEU SER GLU SEQRES 13 D 282 PHE LYS PHE ARG TYR VAL ASN PHE ASP LYS GLU THR TYR SEQRES 14 D 282 VAL VAL LYS PRO THR THR LYS PRO ASP ASN LEU ILE SER SEQRES 15 D 282 SER ALA ASN GLY VAL TRP PRO GLN ILE THR ASP TRP THR SEQRES 16 D 282 VAL TRP GLY ALA SER LEU ASN THR SER PRO ALA PRO ASP SEQRES 17 D 282 ALA GLY THR GLY TYR THR LEU ASP ALA ASN GLY LYS VAL SEQRES 18 D 282 THR ALA LEU ARG ILE VAL THR TYR LEU ASN GLU ARG ASP SEQRES 19 D 282 SER LYS GLY ALA THR VAL GLU VAL ALA LEU PRO ARG VAL SEQRES 20 D 282 ASP ASP GLY THR LEU PRO PRO PRO GLU PHE GLY PRO GLU SEQRES 21 D 282 LEU TYR ARG LEU PRO LEU PRO ASP LYS ILE LEU ARG ASN SEQRES 22 D 282 HIS TRP TYR LYS TYR GLU VAL GLU ILE MODRES 5DHM MSE C 98 MET MODIFIED RESIDUE MODRES 5DHM MSE C 104 MET MODIFIED RESIDUE MODRES 5DHM MSE C 146 MET MODIFIED RESIDUE MODRES 5DHM MSE C 158 MET MODIFIED RESIDUE MODRES 5DHM MSE D 98 MET MODIFIED RESIDUE MODRES 5DHM MSE D 104 MET MODIFIED RESIDUE MODRES 5DHM MSE D 146 MET MODIFIED RESIDUE MODRES 5DHM MSE D 158 MET MODIFIED RESIDUE HET MSE A 25 17 HET MSE C 98 17 HET MSE C 104 17 HET MSE C 146 17 HET MSE C 158 17 HET MSE D 98 17 HET MSE D 104 17 HET MSE D 146 17 HET MSE D 158 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 SER C 57 LEU C 62 1 6 HELIX 2 AA2 ALA C 84 PHE C 88 5 5 HELIX 3 AA3 GLN C 106 GLY C 110 1 5 HELIX 4 AA4 ASP C 121 ALA C 130 1 10 HELIX 5 AA5 ASN C 133 THR C 139 5 7 HELIX 6 AA6 SER C 191 GLN C 195 5 5 HELIX 7 AA7 ALA C 250 THR C 254 5 5 HELIX 8 AA8 SER D 57 LEU D 62 1 6 HELIX 9 AA9 GLN D 106 GLY D 110 1 5 HELIX 10 AB1 ASP D 121 ALA D 130 1 10 HELIX 11 AB2 ASN D 133 THR D 139 5 7 HELIX 12 AB3 SER D 191 GLN D 195 5 5 HELIX 13 AB4 ALA D 250 THR D 254 5 5 SHEET 1 AA1 8 ALA C 79 ILE C 83 0 SHEET 2 AA1 8 LEU C 66 PHE C 71 -1 N LEU C 66 O ILE C 83 SHEET 3 AA1 8 GLU C 111 ALA C 118 -1 O TYR C 115 N LEU C 69 SHEET 4 AA1 8 MSE C 158 ASP C 165 -1 O HIS C 164 N ARG C 112 SHEET 5 AA1 8 LEU C 171 ARG C 179 -1 O VAL C 178 N SER C 159 SHEET 6 AA1 8 SER A 32 VAL A 39 1 N ARG A 38 O LEU C 177 SHEET 7 AA1 8 LYS C 99 THR C 105 -1 O VAL C 100 N ILE A 35 SHEET 8 AA1 8 TRP C 93 LEU C 94 -1 N LEU C 94 O LYS C 99 SHEET 1 AA2 6 ARG C 53 ASN C 54 0 SHEET 2 AA2 6 PHE A 42 ARG A 50 -1 N PHE A 42 O ASN C 54 SHEET 3 AA2 6 HIS C 325 GLU C 332 1 O LYS C 328 N THR A 45 SHEET 4 AA2 6 ILE C 181 SER C 189 1 N SER C 189 O VAL C 331 SHEET 5 AA2 6 VAL C 272 ASN C 282 -1 O LEU C 281 N ALA C 182 SHEET 6 AA2 6 GLY C 261 LEU C 266 -1 N GLY C 261 O VAL C 278 SHEET 1 AA3 2 LYS C 141 THR C 143 0 SHEET 2 AA3 2 GLU C 218 TYR C 220 -1 O THR C 219 N ARG C 142 SHEET 1 AA4 3 ILE C 200 VAL C 201 0 SHEET 2 AA4 3 SER C 204 VAL C 213 -1 O SER C 204 N VAL C 201 SHEET 3 AA4 3 THR C 246 TRP C 248 -1 O TRP C 248 N PHE C 208 SHEET 1 AA5 4 ILE C 200 VAL C 201 0 SHEET 2 AA5 4 SER C 204 VAL C 213 -1 O SER C 204 N VAL C 201 SHEET 3 AA5 4 THR C 290 LEU C 295 -1 O ALA C 294 N LYS C 209 SHEET 4 AA5 4 GLU C 311 PRO C 316 -1 O GLU C 311 N LEU C 295 SHEET 1 AA6 2 PHE C 215 ASP C 216 0 SHEET 2 AA6 2 LEU C 231 ILE C 232 -1 O ILE C 232 N PHE C 215 SHEET 1 AA7 8 ALA D 79 ILE D 83 0 SHEET 2 AA7 8 LEU D 66 PHE D 71 -1 N LEU D 66 O ILE D 83 SHEET 3 AA7 8 GLU D 111 ALA D 118 -1 O TYR D 115 N LEU D 69 SHEET 4 AA7 8 MSE D 158 ASP D 165 -1 O LYS D 162 N VAL D 114 SHEET 5 AA7 8 LEU D 171 ARG D 179 -1 O VAL D 178 N SER D 159 SHEET 6 AA7 8 SER B 32 VAL B 39 1 N ARG B 38 O LEU D 177 SHEET 7 AA7 8 LYS D 99 THR D 105 -1 O VAL D 100 N ILE B 35 SHEET 8 AA7 8 ILE D 92 LEU D 94 -1 N ILE D 92 O LYS D 101 SHEET 1 AA8 5 THR B 43 ARG B 50 0 SHEET 2 AA8 5 HIS D 325 GLU D 332 1 O TRP D 326 N THR B 43 SHEET 3 AA8 5 ILE D 181 SER D 189 1 N LYS D 183 O TYR D 327 SHEET 4 AA8 5 VAL D 272 ASN D 282 -1 O LEU D 281 N ALA D 182 SHEET 5 AA8 5 GLY D 261 LEU D 266 -1 N GLY D 261 O VAL D 278 SHEET 1 AA9 2 LYS D 141 THR D 143 0 SHEET 2 AA9 2 GLU D 218 TYR D 220 -1 O THR D 219 N ARG D 142 SHEET 1 AB1 3 ILE D 200 VAL D 201 0 SHEET 2 AB1 3 SER D 204 VAL D 213 -1 O SER D 204 N VAL D 201 SHEET 3 AB1 3 THR D 246 TRP D 248 -1 O TRP D 248 N LEU D 205 SHEET 1 AB2 4 ILE D 200 VAL D 201 0 SHEET 2 AB2 4 SER D 204 VAL D 213 -1 O SER D 204 N VAL D 201 SHEET 3 AB2 4 THR D 290 LEU D 295 -1 O THR D 290 N VAL D 213 SHEET 4 AB2 4 GLU D 311 PRO D 316 -1 O LEU D 315 N VAL D 291 SHEET 1 AB3 2 PHE D 215 ASP D 216 0 SHEET 2 AB3 2 LEU D 231 ILE D 232 -1 O ILE D 232 N PHE D 215 LINK C ALA A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N GLU A 26 1555 1555 1.33 LINK C ASP C 97 N MSE C 98 1555 1555 1.33 LINK C MSE C 98 N LYS C 99 1555 1555 1.33 LINK C ASP C 103 N MSE C 104 1555 1555 1.33 LINK C MSE C 104 N THR C 105 1555 1555 1.34 LINK C ALA C 145 N MSE C 146 1555 1555 1.33 LINK C MSE C 146 N PRO C 147 1555 1555 1.34 LINK C LEU C 157 N MSE C 158 1555 1555 1.34 LINK C MSE C 158 N SER C 159 1555 1555 1.32 LINK C ASP D 97 N MSE D 98 1555 1555 1.33 LINK C MSE D 98 N LYS D 99 1555 1555 1.33 LINK C ASP D 103 N MSE D 104 1555 1555 1.33 LINK C MSE D 104 N THR D 105 1555 1555 1.34 LINK C ALA D 145 N MSE D 146 1555 1555 1.33 LINK C MSE D 146 N PRO D 147 1555 1555 1.34 LINK C LEU D 157 N MSE D 158 1555 1555 1.33 LINK C MSE D 158 N SER D 159 1555 1555 1.33 CISPEP 1 SER C 149 THR C 150 0 1.96 CISPEP 2 SER C 154 PRO C 155 0 -0.18 CISPEP 3 ASP C 173 ASN C 174 0 -2.27 CISPEP 4 TRP C 239 PRO C 240 0 2.07 CISPEP 5 SER D 149 THR D 150 0 5.22 CISPEP 6 SER D 154 PRO D 155 0 -3.33 CISPEP 7 TRP D 239 PRO D 240 0 3.67 CRYST1 54.683 84.536 138.364 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007227 0.00000